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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0205900 |
| Transcript ID | LotjaGi5g1v0205900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Exosome complex component CSL4; TAIR: AT5G38890.1 Nucleic acid-binding, OB-fold-like protein; Swiss-Prot: sp|Q9DAA6|EXOS1_MOUSE Exosome complex component CSL4; TrEMBL-Plants: tr|K7LJV1|K7LJV1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0205900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:50807100..50810395) extracted from Lotus japonicus Gifu genome v1.2.
GAACTATTTGATGAGGAGTGGAGGGTGGGTTTAAGCCGAAACAAAAAACCAGTGCGGCGGCGGCGGAGAGCAACTACAAG AGCGTGAATGGGAGAAGACAAAGCAGAGATGGTGACTCCGGGAGAAGTGCTAGGCAGAAGCTCCGACGTCAAACCCGGAA GAGGAGCATACACCGCCGCTCACAACAAAACCGTCTACGCCTCCTTAACCGGCTTCCGCCGCACCACGCCTCCCGAACCG GACTCTCCTGACCAGGTACATCTCCTTCTTCGTAAACTAGGGTTTCTTCGTCGTTTTCAAATTTTCTTCATCAATTTGAC TCTTCTAATATGCAGAGACCCACTGTTGAAGTTACTGGTCACAAGGCTCATGGTCCTGTTCCTCAACCTGGATCTGTTGT CATTGCACGGGTATGCTTTATGCCTATTCCTTATCTCAAAGGCTATGTCTAATGCATGTTTGGATAAACAACTTAATTAA ATGTTATACTAAGGGTAAGTTTAGATGAGAATTTTATTGAAATAAGGTTAAAATTACTCATAGGTAGGCGTAAAAGAGCT TATAGATACCCGGCGGGTGCCGGTTGCAATGGTAAAAAGTGACTGTTTGAACCTTTAGGTTGAGTGTTTGATCTTTAGGA GCCGCACTTGAGATCTTTGACATTCACAACACCTGGGTTGGAATTGCAAGAGCGATTTAATGCGCAAAAATAAAATAAAA TGAAAGAGCTTGTAGATTAGTGATAAGCTATTTTCATAAGTTTAACTTATACGAAACTTGCATTAGTGCTTATAATATGA GATGAGCTCTTGCAGATGTAACGTATGTCTATATGATGTTACGATCTTTTATCTTTAAGCGCTACATGCGTTTTGCTATG ATTATAGGTCACCAAAGTGATGGCTAGGTCAGCTTCAGCTGATATCATGTGTGTTGGACCAAAGTCTGTTCGAGAAAAGT TTACTGGCATCATCAGGTATGCTATGCGTTTAGTCCCGCCATTTATTTTCCCAAAATATCTCAGTAACTTTACTTTCTTA AACAACTCGAGCTATTTATGGTAGGGGATTATTAAATTTGTTTTGCGAAAGATCATCTTATGATGCTCTGTTCTTTGCTT GTTTGTAAACATGTCACATTTTTATGTTTTAATTTTATGTTGTTATCGTTGTTGTAAATGAATCGAAGTATCAAATGCAG GGAGGCTGGCTGCCTCACAGTCACCACCACCCTTTACCTCCATTTTAATCAATACCTCTTGTCCCATTGGCTTTGGTATA ATGTTGGCTAAGGCTTAAAGTGGAGGACAAAGTGGTGGAACCTGGTTTTAGGTGGCCTTCTCTCCCATGACTTCAACAAG AGGTGTGCATATAGTATAGTGCTGCATTGCTTGCTCATTAATCAATGTGCTAATGCTTTTTAAAACAAATTACTGATTCC TCAATGTACGTGCTTCGAATTTGGGTTACTATTCTTTCATAGATATCCTCTACATTCAAAGTTACAATTCGTACCTTTAG AGGGCCCTGCCTGGGGAAAAAAGGCAAGAAAAGGGTTGGGGGAATTTTTGTCAGTATAAATGATCTATGCTTGGAGTTCC TTCATCTTTTGGTTGAACTTATTTTACTTCATATGTGCATGCCCATCTCTATATATTGAATTTCATTTTTTGACTTTTAT AGTTTTACTTTTAATAATAAATATGTTTTATGTTTACAATGTTGAAGTATTTATAATTCTTATTTTGACAGGCAGCAAGA TGTTAGAGCAACTGAGATTGATAAAGTAGAGATGCACTTATCTTTTCGTCCTGGTGACATCGTTAAAGCTCTTGTGGTAT TATTTCTGCTTTTCGTGTTTAAATAAGTTGATTTTAAAATTTATCTTAAATCAATTGGTTTCTATAGCACCTTAATCTGT TTTTTTTATCAGCTTTCGCTTGGAGATGCACGGGCGTACTTTCTGTCTACTGCAAAGAATGAACTTGGTGTTGTTTCTGC AGAAAGCACTGCTGGTAAGATTATGCTCATATTCTGGGAGCTGCACCCTAATATGTAGTTGTAGAATGTTGCTGGTTCCT CTAGTTTATGTCAGTAACTCATGTTACTGTTTATTTTAAATGGGTTTCTGTATCACTCTAGTCTAGCTGATTATGTGGAA GCTTTTTTTTCCTGTCAATTCAGTTCCTTCGTTTTTTTCTTGTACTTGTTTTCTCTTTGGGAATATTGCTGGGTCATTTA CTTCTCTTGATGGAATGTTAGTTCATTTAGGAGGATAGATCTAGTAATGCTGAAGCCCAAGGGAACAAAATGCATACTTT TGATGATAGTAATTTGGAATCTGTACTTCCTCAATGTGTCTCGGATATGAGTAAATTGCATCAGTTTATCGGATAGTAGT AAATGCAGCAACGAATATCATTCAGTATGAGGGATAGGTTAGTGATGCGGGCAGGTTTGACCATGAAAGAACACTTCTAA AATTTATCTTGGAAATGTTTTAGATTCTACATGCACTACTTTGGTCTGGTAAGTGGTAACAAGCTTGTATATTAGCCTTT CATGCATTCTCACATTAATTGCTCTGTTATACCCTGTGTGCTTAATGCTGTTCATCATATTTTATTGCAAGCATTCAAGT AAAATCTCATAATTTTATTATAAGTTGCATACTTGCACCTACTGGTGGGTTTTTGTAGAAGCAGACAATATTGAAAAAGA TTGTTTCTTTTAAGCTTATGTGACTGACAACTCACGGAATGATGTTTTACACATCACTTTCTTTTCTATAATATACCAGA CCAAATTCATATGTGCCTAAACTTGTACTTCCTTTCTGTTTAGGTGCAACTATGGTTCCTATAAGTTGGACAGAGATGCA GTGCCCATTAACTGGTCAAATTGAACAAAGAAAGGTTGCAAAGGTTGCAAGCTGACATTAATACTAAACATCAGATGGAA TCCGTACTCCCTTTCACCCGAAATGCTCCTGTAGAAATCTACTAACATGCCTTGTTGTTAGAGTGAGAAATTATGTCTAA GCTCGTAGTTTAGTCATACAAGAAAACAAGCTTGTATTTTACGTTGTGCTATTGTCTTACATACAAAGTAGCATCAATGC AGGATTTGATTTAGCTCATTTCGAACAGGATTTTGATTTATCTCAATCTAATGAGAAGCTGCTTATACTGTTTACTAGCA CTGTAACATTGACATGGTTTAATTTTCAACTTGACTGGAACTAGTCTTGTATGAATTAAAAGAAAGATTCATACAACTAA ACATGCTGCTTTCCAA
CDS sequence (LotjaGi5g1v0205900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGAGAAGACAAAGCAGAGATGGTGACTCCGGGAGAAGTGCTAGGCAGAAGCTCCGACGTCAAACCCGGAAGAGGAGC ATACACCGCCGCTCACAACAAAACCGTCTACGCCTCCTTAACCGGCTTCCGCCGCACCACGCCTCCCGAACCGGACTCTC CTGACCAGAGACCCACTGTTGAAGTTACTGGTCACAAGGCTCATGGTCCTGTTCCTCAACCTGGATCTGTTGTCATTGCA CGGGTCACCAAAGTGATGGCTAGGTCAGCTTCAGCTGATATCATGTGTGTTGGACCAAAGTCTGTTCGAGAAAAGTTTAC TGGCATCATCAGGCAGCAAGATGTTAGAGCAACTGAGATTGATAAAGTAGAGATGCACTTATCTTTTCGTCCTGGTGACA TCGTTAAAGCTCTTGTGCTTTCGCTTGGAGATGCACGGGCGTACTTTCTGTCTACTGCAAAGAATGAACTTGGTGTTGTT TCTGCAGAAAGCACTGCTGGTGCAACTATGGTTCCTATAAGTTGGACAGAGATGCAGTGCCCATTAACTGGTCAAATTGA ACAAAGAAAGGTTGCAAAGGTTGCAAGCTGA
Protein sequence (LotjaGi5g1v0205900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGEDKAEMVTPGEVLGRSSDVKPGRGAYTAAHNKTVYASLTGFRRTTPPEPDSPDQRPTVEVTGHKAHGPVPQPGSVVIA RVTKVMARSASADIMCVGPKSVREKFTGIIRQQDVRATEIDKVEMHLSFRPGDIVKALVLSLGDARAYFLSTAKNELGVV SAESTAGATMVPISWTEMQCPLTGQIEQRKVAKVAS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 74 | 74 | - | – | |
| PANTHER | 3 | 195 | 193 | 4.9E-92 | ||
| Pfam | 8 | 45 | 38 | 1.1E-10 | ||
| Gene3D | 8 | 61 | 54 | 5.8E-7 | – | |
| SUPERFAMILY | 8 | 45 | 38 | 1.39E-5 | – | |
| Gene3D | 65 | 196 | 132 | 7.5E-54 | – | |
| CDD | 70 | 160 | 91 | 4.55237E-45 | – | |
| SUPERFAMILY | 71 | 191 | 121 | 6.99E-34 | ||
| ProSiteProfiles | 75 | 154 | 80 | 8.592 | ||
| Pfam | 101 | 142 | 42 | 2.4E-11 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Exosome (RNase complex) | A ribonuclease complex that has 3-prime to 5-prime exoribonuclease activity and possibly endoribonuclease activity, producing 5-prime-phosphomonoesters. Participates in a multitude of cellular RNA processing and degradation events preventing nuclear export and/or translation of aberrant RNAs. Restricted to processing linear and circular single-stranded RNAs (ssRNA) only. RNAs with complex secondary structures may have to be unwound or pre-processed by co-factors prior to entering the complex, esp if the 3-prime end is structured. | ||
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | RNA binding | Interacting selectively and non-covalently with an RNA molecule or a portion thereof. | ||
| Biological process | RNA processing | Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules. |
Expression pattern of LotjaGi5g1v0205900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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