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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0214600 |
| Transcript ID | LotjaGi5g1v0214600.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Deaminase-related family protein; TAIR: AT5G28050.3 Cytidine/deoxycytidylate deaminase family protein; Swiss-Prot: sp|O34598|GUAD_BACSU Guanine deaminase; TrEMBL-Plants: tr|A0A0S3SQ64|A0A0S3SQ64_PHAAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0214600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:52012179..52016375) extracted from Lotus japonicus Gifu genome v1.2.
TTCTAATTAAGATTAAGATTTAGATTCTAATTAAGTTGAATATTTATGAAGTGATAAATCTATATAAATCAAAATATTAC CCACTCTCCGATCTTCCTATCTCCATTTTTTGAGTAACCGACCAAAAAATGAGTTGAATTTGACCACTTTGTACTTGCGT GACCATTTTGTCACCCTTTTGTGGGGTTTCGTTTTCTACATCCTACTTTACTTTGCAACCATTCCTGGAGTATTCCGTCT CTTGTCTTGTTGTTCCTCTGATTCTGACTAACACCATCAATATCATGGAAGATGCTGTTGCGGCTGCCACTGCTACCGCT ACTGCTAATGGTAAATTCCATTCTTCATATTCTACGCTTTTGCTTCTTCTTCTGTTTCCTTAATCATGTTATGCATGCAC TATGGAAGCAAAACATATCATATATTTGATTATGGATGAAAACTTAGTGAATTGAGTGTTTAGACTTTAGACTAATGAAG GAACTTAGAATCTGTATTATGGGAGATTAAAGCTGAAATTGCTATGTAGAATGTAGAACCAGGACAAATTACCATCCAGA TTTGTGAATCCAAATGCATATATTGACTAGAACTATTTTCTAGATTCCATTTCCATGGATGTTTTGCATGTAACATAGAG ACAAAATCTTGATTGTTGTTTTTCCACTGAGCACATAGATCATTTGAAAGGGGTTGATTTAGTTTAACCACAGTTCTGAG TATGCAAGTGAGCTGAATTCTAGTTTTGCCACCTATTGCTATAGCTTTTTACTTTCAAATTTGTTTTCTTCCTAATCTTT TTGAAGCTATCGTTATAGCAGTCCACTTCTACATTAATTTTTTAATATAGTGATTTCTTTTGTGTATTTTGTTCTATGGC TGGAAGAATTTGATTGTTTGATACTCTTTTGCCTGGCTTTTGTTGTAGTGTTGGAAGCGAAAGATGGAACTATTTCCGTT GCTGCAGCATTCCCTGGTCATCAAGAAGGTATGATAGATTTGTCTCGGCTCATGTAACAACCTTTTTTTACAGACATTTT CTCCTAATTCATACAAAAAACACCACCATGCTCCAACCAGTAAAAAGGAAATCATGAGTGCAGAAAAGTCAGTGAAAATT AGTTGCTTTCCAGGTTTCCTTAGTAAATTAGTAAGATGGCATACCTTTTTTTCAAACCATAGGACCGGATTTACGTCTGC AAGAACCTGAATATATAAGTAGTTTATTGTTGCATCTTAAACTTGATCAGAGGGATTGATGCTCCTCTACGAATATTGGT TTCTGAATTCTGAAACTATAATATTTATTTCATTGAGTTACCTTAATACGCAACTCTTAACTTCAGATGTAAGAGTGGTT GCTTAATATCAGACATATTCTTCCATGTATTATCATATTTGTGTTATTTTCTATTGTTATACCAGCTATACAGGATAGAG ATCACAAGTTTGTAACAAAAGCAGTTGAAGAAGCATATAAAGGGGTTGAATGTGGTGATGGAGGTCCATTTGGTGCGGTC ATTGTTCGAAATGATGAAGTAGTTGTAAGCTGTCATAACATGGTTTTGAGAAATACTGATCCTACTGCCCATGCTGAGGT TACTGCTATAAGAGAGGTACAAAATAATTAAGTGAGGGGTTGATTATACTATTTTTTATGACCTATTTTGTTCCTTTTTC TTTAAGGCAGGTAATGATTATACTTAGTTGCTTAAAAGTTGAACTGTTCAAAGTTTAAACAGGCATCATTAACATCTGGA TCTGTATAACCTGGCATGTTAGGGAGATAAAAAAATTGATACTTAATATCTCTTTATGAATTGAAGTATTGAACAGAGTA ACCAAAACTTTGAGCATTCTTTAATCATTACCTGCCATCATTTTATATCTGCTGTCTCAGACAGATTCCGATCTCAAAAT TTGGGAGGGTTGAAAACACTACTAGACAATAAATTGAGCAGGTTGTGTATGCTTTTAAGTTGCTGCAGTTTCATTTTGTT TGTTACAACATTAATATTGCTCATTTTATATGTAGGAGAGCTCTAATTGTATATCAGAACCGGAAACCACATTTATATTT GCCAAACCATATCCTCTTTCTACTAAATTCTTTAGAATACATCATTTTGGACCTCGAGTTATAATTAGACATTATCTGTA CTTCTGTAGGCTTGTCAAAAGCTGAATCAAATTGAACTTGCTGACTGCGAGATCTATGCTTCTTGCGAACCTTGTCCAAT GTGCTTTGGTGCAATTCATCTTTCAAGAATTAAGGTGAGCCTTGGACACCACTCATTTTCTCCTCACACCACATGTTTCT CTAATTTTATTCTCACATTCTTTTTTGTACCTACATGCTACATACCTACATGGAAACAGAGGTTGGTTTATGGGGTTGAA GCAGAAGCTGCAATAGCAATTGGCTTTGATGATTTTATCGCTGACGCACTGAGAGGCACTGGTTTTTATCAGAAGGCCCA CCTGGAGATTAAGAAGGCTGATGGTAGTGGTGCTGTAATTGCAGAACAAGTTTTTGAGAAGACAAAGGCCAAGTTTCAAT TGTACTGATTGCTTTGATCATCATTTTGAAAGTGAATGCATGTTACAATTGTTCAGGAAAATCCAGGTTCTTATATAACT GAATACCAACGAATTCAAGTAATATAAAATTAAATTCTCCTATGTTGCTGTTGCTGTTTGTCTGTTCATATTGTTTGCTT GAGGCATTACGAATTATTATTGATCTGTTTGATTGTTCAATAGTTGTGTAGGAGGGAGAGCTATTTCAAACTAGAAAATG AGACAAGTTTGGGCGATATTAAGCCCATCATTCAAAAGAATCCAAGCTTCTGGATTTTGATTCATGTATAATTAAATTTC ATGCCAACTACAAAAGATTACAGAATTGCTAGAGCTAATCTACTATTTCACCTCCACAATTCATTGCAAAAACAAGCTGT TTCTGCATATCTAGGGAGTGGGGAATAGAATGAAACCTCAATTAACCTCGGCTTGACCGCAACTCCTCCAATCTAGCCTT GATCTGACCCTGCAACAACTCCAACCTATCCAAATACACCTCCAGCTCCAAAATTCTTCTCCTTCTCCATTGTTCATCCG CCTCTTCCCCGGGGAATATCGGCGTTGCTGGCGCTCCGAGCGGCTCTTCCCGAGAATCATTCAATAATTCCTTCATCAAT GGTGAGAAACAGGACCTCATGGTGTCCTCAATGAGACCCTGTATTCTAGTAGCTGCAGCATCATTGTTTTCCTCATTTGT TGTGTCAACATCATCTGTAACAAACCGCAATCGCTTTGGCTCCCTTTTTTCTATGTCATCACAATCTTCAACTTGTTCAT TCTTTCCCTTAACATCATTGCCAACAAGATCATGATTTTCATGATAAGGTCTCAATTCTTCACCATCCAAAGCATCATTG CCTGTGTCATTGCCCCAAATCTTGTGGGAAATTTCAAAAATGGCCTGCTCATGGGAGCTCTTGAAGGGAACCTGAACCTC CTTGCCTTTGTCCAAAGTTACCTTGTGCTTTCTCTTTAACCTGCGCAGCTTCTCCACAAGCTGGTTTCTGTTGAAATCCA CGTTTAGTTTCGGCCTAACGTGATCATGCAACAAAGCTACGACATTCTGGAGAGAGGTTGTGGCCTTTCCCTGCTGCTTG ATGTAATCATGGTACCCTTTCAACAGTTCCATCTCATCCTGCTTCGTCCACAGCCTCTGATACTGTCTCACCCCGGCGGA GTACTTGTTGCTGCTGCTGCTGCTGCGCTCTCGTTTTGAGCGAGTCATTATCATAGTGGCAGTGGACGTGGCGGCAGCGG TGTTTCTATCTTCAGCAGCAGCTGGCAAGGCTATCATGGTGGCAGTGGTGGTGGCGGCAGCGGCGTTTCTATCTTCAGCA GCGGCAGGGAAAGCAACTGTCACGGCTGGGGAGGCATGGGAAACGGCAAGCGCGACAGGAATGGTGTCATCATCAACATC GCTTGAACTGAAAAAGTGGTCGTTTCCATCATCTTCCACATTGTTCTTCTGCTCGTCATTTTCATAGTCTGATTGGTCAG TGTCAAGGCTTCCTTGTTCTTCTTCTGATGATGATGAGGAGGAGGAAGAGGTTGAGGAGGAGAGGATCCAAGAAACCAAT GGGGAAAGCATTGTTGAGGGAGGAGACACAACACTTG
CDS sequence (LotjaGi5g1v0214600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAGATGCTGTTGCGGCTGCCACTGCTACCGCTACTGCTAATGTGTTGGAAGCGAAAGATGGAACTATTTCCGTTGC TGCAGCATTCCCTGGTCATCAAGAAGCTATACAGGATAGAGATCACAAGTTTGTAACAAAAGCAGTTGAAGAAGCATATA AAGGGGTTGAATGTGGTGATGGAGGTCCATTTGGTGCGGTCATTGTTCGAAATGATGAAGTAGTTGTAAGCTGTCATAAC ATGGTTTTGAGAAATACTGATCCTACTGCCCATGCTGAGGTTACTGCTATAAGAGAGGCTTGTCAAAAGCTGAATCAAAT TGAACTTGCTGACTGCGAGATCTATGCTTCTTGCGAACCTTGTCCAATGTGCTTTGGTGCAATTCATCTTTCAAGAATTA AGAGGTTGGTTTATGGGGTTGAAGCAGAAGCTGCAATAGCAATTGGCTTTGATGATTTTATCGCTGACGCACTGAGAGGC ACTGGTTTTTATCAGAAGGCCCACCTGGAGATTAAGAAGGCTGATGGTAGTGGTGCTGTAATTGCAGAACAAGTTTTTGA GAAGACAAAGGCCAAGTTTCAATTGTACTGA
Protein sequence (LotjaGi5g1v0214600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEDAVAAATATATANVLEAKDGTISVAAAFPGHQEAIQDRDHKFVTKAVEEAYKGVECGDGGPFGAVIVRNDEVVVSCHN MVLRNTDPTAHAEVTAIREACQKLNQIELADCEIYASCEPCPMCFGAIHLSRIKRLVYGVEAEAAIAIGFDDFIADALRG TGFYQKAHLEIKKADGSGAVIAEQVFEKTKAKFQLY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 3 | 3 | - | – | |
| Phobius | 1 | 19 | 19 | - | – | |
| Phobius | 4 | 14 | 11 | - | – | |
| PANTHER | 6 | 194 | 189 | 3.9E-120 | – | |
| PANTHER | 6 | 194 | 189 | 3.9E-120 | – | |
| Phobius | 15 | 19 | 5 | - | – | |
| Phobius | 20 | 196 | 177 | - | – | |
| SUPERFAMILY | 34 | 154 | 121 | 1.32E-40 | ||
| ProSiteProfiles | 39 | 153 | 115 | 22.979 | ||
| Gene3D | 40 | 195 | 156 | 7.2E-47 | – | |
| Pfam | 40 | 139 | 100 | 2.8E-24 | ||
| CDD | 48 | 152 | 105 | 4.15612E-43 | – | |
| ProSitePatterns | 91 | 128 | 38 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Catalytic activity | Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. | ||
| Molecular function | Hydrolase activity | Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. |
Expression pattern of LotjaGi5g1v0214600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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