Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0224700 |
| Transcript ID | LotjaGi5g1v0224700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Translationally controlled tumor protein; TAIR: AT3G16640.1 translationally controlled tumor protein; Swiss-Prot: sp|Q5J907|TCTP_ELAGV Translationally-controlled tumor protein homolog; TrEMBL-Plants: tr|A0A151U4Q6|A0A151U4Q6_CAJCA Translationally-controlled tumor protein isogeny; Found in the gene: LotjaGi5g1v0224700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:53108577..53111337) extracted from Lotus japonicus Gifu genome v1.2.
AAAATAATAGATATGATCATGGATTTAAAAAAAAAAATATGATCATGATCATATCTAGTAAAAATAACAAAAGTTTAGTA AAAATAAATTTAGAATCAGAAGAACTCTGGAGAAAAATCAGGAACTATATATGATTGCAATCTAAATATCAGGAATCCCA CTCTCCCTTAAACTCTCTCTGTTTTTCTATAAAATCTCACCGTCTCTGTTTTCCCGAAATTCCCTCACCACCTTCATAAA CTCTGTTCTCTCTCTCTTCTTCCTATAATTTTCGAATTAGATTTTGGTTTCTGTGTTTTGAAGCAGAGAACAACAACAAC TGCAACCATGCTTGTCTACCAGGATCTTCTTACAGGTAAAGCTTTCATCTACAACCCTTTTATCTTTTCCTTTGCAACCC AATTGAGATTCTTTTCCTTTTCTTTTTTCCCTCCCCTGTTTTGTGTTATTGTGTAGTTTTGGATATCTTAGCCTTGTTGT TAGTTGTTTCCTTGATGAACGCTAAAATCATTTAATTTTATACAATTTTCAAGCTTGAAATTGTTGTATTTGCCACAATT GTGATTTAAGATAGCAGAAGGAGAAAAAAAAAAAACAGAGTAGTTTGAACCTTTTTAACGAATACAGAGTTGTTTGTGTG TTCTCTAGGGGTGAACCCTGAACGCTTCTTGTTAACTTAGCTTTGGATTTGGAAGAGACTTCCATAATTATTCAAAATTA CAATAGAACTTGTTGGTCTAATTTCAAATAATATATATATATATATATATATATATATTTGTTGTATTTGTGATTTTGGC AAAAGTGCAATTTTCTGATTTTGTGAGGAAGTGCACACTAGTTGTTTTTAACCTTAAGGATGATGTTACCTAAATTGTAT GATTTTTAGTTAGTATGATTGCTAGTTGGAGATAATGTTAAGATCTAAGATTATTTCTATTGGTTGAGATAAGGATTAAG TGAGTAAATCATTGTTCATCTTTTAACCAAAAAAAATAAATAAATCATTGTTCATCTAAAAAAGGGTAAGTCGATGCTAT AAAGCTCTTGCTATGTCCAACATGTCTAAAGAGGGTCCAATGTCCCGAGAGGGGCTGAATCCACTTTGTAGATCAAAATG TAGACGGTCTGTTATTTCGCAACTTGAACATGTGACTGTAAAATCACATTGCAATTACCGTGGCTAGATCATGTTCATAT GATCATATTAAAATGCTTCAACTTATGAACTTCATTATTTTGATGAATTTTTAGGTGATGAGCTTCTCTCTGACTCATTC CCCTACAAGGAAATTGAGAATGGAATCCTGTGGGAAGTGGAAGGAAAGGTTAGGCATGATTTCTATAATTTGAATCATGT GTTTCTTTTCTTTGCATGCTTTATTTCTCATGTTTTTGTGGCTCACCAATGAATCATACCTCAACTTTGTTGGGCAATGT GGCTTTCTGCAGTGGGTCGTTCAAGGTGCATTGGATGTAGATATTGGTGCTAACCCTTCTGCAGAGGGTGGAGATGAGGA TGAAGGTGTTGATGACCAAACTGTCAAAGTAGTTGATATTGTTGACACTTTTAGGCTTCAGGTATATAGCATTTCTTATT TCTAGTTAACCATTTGTTGACATCTTATGCAGTCAGTACAAATAATTTTTTTCTTTTTTTTTTTCCAGGAGCAACCTCCT TTTGATAAGAAACAATTTGTCACATTTGTGAAGAGATATATTAAATTGCTGACACCCAAGTTAGAGGCAGAGAAGCAAGA GTTGTTTAAGAAGCACATTGAGGGAGCAACTAAGTTCCTACTCTCAAAGCTCAGTGACCTCCAATTGTATGTGGTGCTTC ATTATCTTTCTACTTCTTTGGTTTTATTATATTTTGATATGATAGTTTACGATGATTTATTGGCTTCAGGCAATAGGGCC TGTGGAGAATCTAAATTCATTATAGGCCAATTTGGATCCCCTCTCCAACATAGATTCTCTATAGCCCCTCCAAAATAATT TTTTAAATTGAAGAGTTTATGGTGATTTATTGGTTGTAGAGGCCGTAGAGAATCTGAATTCTCCTTTGGACCAAGAAAAT TTTGGTTCATAAGTTAAAATAGTTTCTCTGCAAATTAATTTTTAGCACGTAAAGAACATATTGTAAATAGTATGTACTTA AATAATACTAGTAGTAAAAACATGGTTCATTTGTGTTCTAGTTTTTATTATGGTCCACTTTTGAATTCCCTATTTCTTTA CATAGTTATTTGGTTGCTTTCGTTATGCATAAATAATCCTTACTGATTGAGATTTGATGTGGCAGTTTTGTTGGGGAGAG CATGCACGATGATGGAAGCCTGGTCTTTGCATACTACAAGGAAGGTGCCACTGATCCAACTTTCATCTACTTTGCCCATG GGTTGAAGGAGATCAAGTGCTGAACACATGGTTTAGGCTTTGTTCGTGATGTGGAATCCTTGTGTTTCTGGGTTTTGGTC TTTAGATACTAATCGGGCTTTATGAGCTCATTATGTTATATTTAGGTTGTTTCAAGAGTTTGATTTTTTAAATGGTTTAT CGTTTGGTTGTTATGTGTGGAACAAATTGTCATATAGTGATTTAACCCAGTAACATGTCTGCTAGTTATTTTTGTGTTTT ATTTGCCAAATTAATTAAGTTCTATTGTTTTATTTGCGAAATTAAGTTCTATTGTTATCTTGATGAACCTCTCAGTTCAT TGGCAAATAAAGAGAAAAACAAACAAGTTTGCAGTAAAAAA
CDS sequence (LotjaGi5g1v0224700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTTGTCTACCAGGATCTTCTTACAGGTGATGAGCTTCTCTCTGACTCATTCCCCTACAAGGAAATTGAGAATGGAAT CCTGTGGGAAGTGGAAGGAAAGTGGGTCGTTCAAGGTGCATTGGATGTAGATATTGGTGCTAACCCTTCTGCAGAGGGTG GAGATGAGGATGAAGGTGTTGATGACCAAACTGTCAAAGTAGTTGATATTGTTGACACTTTTAGGCTTCAGGAGCAACCT CCTTTTGATAAGAAACAATTTGTCACATTTGTGAAGAGATATATTAAATTGCTGACACCCAAGTTAGAGGCAGAGAAGCA AGAGTTGTTTAAGAAGCACATTGAGGGAGCAACTAAGTTCCTACTCTCAAAGCTCAGTGACCTCCAATTTTTTGTTGGGG AGAGCATGCACGATGATGGAAGCCTGGTCTTTGCATACTACAAGGAAGGTGCCACTGATCCAACTTTCATCTACTTTGCC CATGGGTTGAAGGAGATCAAGTGCTGA
Protein sequence (LotjaGi5g1v0224700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLVYQDLLTGDELLSDSFPYKEIENGILWEVEGKWVVQGALDVDIGANPSAEGGDEDEGVDDQTVKVVDIVDTFRLQEQP PFDKKQFVTFVKRYIKLLTPKLEAEKQELFKKHIEGATKFLLSKLSDLQFFVGESMHDDGSLVFAYYKEGATDPTFIYFA HGLKEIKC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 168 | 168 | 1.2E-109 | – | |
| PRINTS | 1 | 21 | 21 | 5.5E-27 | ||
| PANTHER | 1 | 168 | 168 | 1.2E-109 | ||
| Pfam | 1 | 164 | 164 | 1.6E-57 | ||
| Gene3D | 1 | 168 | 168 | 4.2E-57 | ||
| SUPERFAMILY | 1 | 168 | 168 | 2.69E-60 | ||
| ProSiteProfiles | 1 | 168 | 168 | 59.789 | ||
| ProSitePatterns | 45 | 55 | 11 | - | ||
| PRINTS | 46 | 57 | 12 | 5.5E-27 | ||
| PRINTS | 60 | 79 | 20 | 5.5E-27 | ||
| ProSitePatterns | 125 | 147 | 23 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi5g1v0224700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…