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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0224800 |
| Transcript ID | LotjaGi5g1v0224800.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RING/U-box superfamily protein; TAIR: AT3G05545.1 RING/U-box superfamily protein; Swiss-Prot: sp|Q9BWF2|TRAIP_HUMAN E3 ubiquitin-protein ligase TRAIP; TrEMBL-Plants: tr|A0A151U4Z3|A0A151U4Z3_CAJCA Uncharacterized protein; Found in the gene: LotjaGi5g1v0224800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:53144336..53150514) extracted from Lotus japonicus Gifu genome v1.2.
GTTCTTCTCAATTTTAGGGTTTTTTCTTCTTCATGTAATGGGTCTTGGTAACAACGAGGACGAGGATAATCAAGTGGTAG ATGGAGGAGATGGTGGCGGAGCCAAGGGTTTCGGTTCAGTGTCTTGCTCAATTTGCCTTGAGGTTGTTGCTGACAATGGG GATAGATCCTGGGCTAAGCTTCATTGTGGTCATCAATTTCATCTGGGTAACTTCAATTTCTCTCTTCTTGAATGCATGCT AATACAATTGAATTGCCATCATGATTTAGAACATTGAATATATTTGAACTGGAATTGTTGAGATCTGAATTCTGTTACTT TGCATGGTTCTTATTCTAGATGACATGATTATTGGCTTTGTTCATTTGGGGTTACAGGATAGAGAGAGTTTATTAGATTA CAGGATCCAATTGTTTGTTTGTTTAAATGATTGTGACCAATCCAAAAGGGGCAGCTGATTGTGAAAATCTTGTCGCGACA AACGGCAAAATATGGTTGATTGGATGTGTGTATCTTGCTTTGGAAATTATTAAGTTTGAACTGGTATTTGCAATTTCGAT CGGTCGTTTTGACGATGTTTTGGTGAAGTTAGATTTTATGATGGGATTGTAATAGATTCGTTTTCAAGATTTGCAGTTGG TAGGAATCATCTTTATTTATGCCAAAGTTGTTATTGTGGGGGTTGTATTGAATTGCTCGAAGGGTTTTTAATTGTCATAT TTTGACTAGCTATAAATCTGGTGGAATTTCTGATTGGCATATGTATTGAAGTTGCCTTATGTTTAGCAGTATGTATTGAC TGCTCATTAGTAGGTCTTGTCACAATGAGGAGTCCTGAGTATCTGATTTCATTGTCTTTCAATGAAAAACTTAGTCACAA AGGCACTGATACATATGTATTATCATGCTTGTTTTTGCTGCAACCACAACACTCATGCTTGTTTTATGGCAAAACTTCTA GCTTTCATCAGGTTCCATCCACATGCCACATGGTATCATATTCTTATGCTTATTAATTTTTTTTTTGCATACCATGTAGA TTGCATTGGATCAGCATTCAATATAAAAGGGGCAATGCAATGCCCTAATTGTCGGAAGATTGAGAAGGGTCAGTGGCTTT ATGCCAATGGTGGTCGGTCATATCCAGAATTCAACATGGATGATTGGACATATGATGAGGACCTGTATGATCTCAGCTAC TCTGAATTGGTAATTGTCCTGTTAATTTTGTATTTCATTGGAATTCTATTTTATTCTTGCAGAAGAACTCAGTATAAATA TACCTCCTTCAATGGTTATCTATGTTTGTTTATATAAGAAGCACATTTGGTTAGAGCGTGCTCTCATGTAAGGCATTGAT CCTGATCATACAGTCATAATGGGTGGGTCGTGATCAAGATTAGATTTAAGTAAAATAATCCTAGATATTCATATAGTGTT GTACCATGAATATTTGCTCATCTCACCTTGTGTGCTTTTTGGACTGTGCACGTGTGTAAAATTGTAAACTTGTTTAATGC TTGGCTTCATCTAAAAGGATTTTCCTTGAAATTTCTGGGGAGGGTGGTTAGCTATGTGCCTTTTATCTATGAAGCATGAA CATTTCTTTGTCCAGATGTCAAAGCGTCTGACATGTTTCTGATGCTGACGATACAAAACGCGTCAAACACTTGTCACCAG GTATCCTATTAAAGAGTATAGCTATTTAGCTCAAAAAAAATTTCGTGAAAACTTCATGAACATATTATATAGCCAATCAG ATATCAATCACCAACTAGTGTGGGGGAAATAACCATTCATGTGGTCGGTAAAAAATGAATTTTGTGCCACGTATAGTTCG TAATTCAGGGTTGTCAATAGCATGCTATAGCGCCATAGCGGCGCTAGCGTTGCAGTTCAGTGTAGCAGCTGTTGCGGCTG CTAAAGCGGAGGAAATAGTAGCCTTAGCGGTGCTATTTGGCGGAACTGATAATTACCCAATAACAACCAGAATAAGTTCT TGTTAGGGCATTCTGGGGAGGTATTTCAGAACATACTGAAAATGGTCTAGTTTTAGGAGGAAGTGATATCGAACTTTCAT GTTTTTAGGCAATTTAGTTTGGCAATTAGAGACTTAAACTTCTCGATTACCTTTTATGTTTTGTTTACGACACGTATGAC TTTTTAATGTTAATTATGGCTGCCATGAATTGAGTATTTTTTATCATTTATATGTATATAGTTATAGTATACAAACAAAA AAATTACATAGCGGTCATCCCGCTATAGCGCTTTTAGGGTCAGCCGCTATCCGGGATTGACAACACTGGTTCGTATTAAT TCATGGTAAACATTTATGAACTACAAATCATTTCTCCCTATCAAATAAAACCTGTAGGAAACAAAAATTAGAGTAAGGAA GTGTGGGAAATGGAAGAAAAATAAAGAAGAGGGTGGATCTTATAATTTGTGTTACACCCATTGTACTAAGAAGGATCAAA AGGTGAAGAATTTAATAGAAAGAAAAGTGACAAAAAGATTTGAAAGAGTGAGAACAGAGAAACATTGACTATATGAAAAA AACAGAGAAACATGACTGAAAAGGCACAACCAGATCAAAGAAAAATGAGGTTAATAAAAAAAATTCAGAGGGAGGAAAAA AGAATTATTTATTCACCAGAGATAGATGGTGGCTGGAGAATAGAGTCACCGGAGGTGGGTTGCTAGAAAGGGCCGCCGAT GAGTAGAGACTGTGCAGCCATTGATGAAAGAGATCGGAAGTGAGAGAATGAAGCCAATTGAGAGTTAGCGTATGGTTGAA ATTGCAAGAGAAGAGAGTTTATGTTATGTTTTTAGGGTTTCAGACACGGTTAGAACTCCAATATGGGTTGGGTTGATTGG ATCCATCTCCATTTTACCCTTATTTATCCTCCATTTGCGCCATTCCACCATTGAATGACATGGCTTCCTATGTAAAGGTG GCTGCTATAACCTACCTCCTGAAACCTGCAACATCACAGAACCTATATGGTGTCCTATCATATTTCTGCTGTGGCGCCAC CATGGCCGCAATTTGACAATACTGCTAATATCTGCTGGTGCATTATTTCTCTCCATTGTCATTTGTAGTATATAAATGAT AAATCTAGATGAAATCCATTTTTCTATAAGTGGTTGGACTTTCAAGGTTTTCATTACCCATTTTAATTGGAATGATTTCT CCATTTCATTATATTGATTGATAATATTTTATTACCATTTTGACTATATTTCCCCCTAAAATGTTTTCAGCAATCCTTTG GAGTTCACTGGTGCCCGTTTGGCAACCTGGCAAGACTTCCATCGCCATTTGAGTAAGCAAAGTTAACATTCCACAATGTG CATACAAACTGATCTCTGTTTAAATTCATAAACTTAGGCTTGTCATTTGTCATACTCTTGAGTTCTTTGAAGTGTATAGA CTCCTGTTCTTGTGCATTATGAGAAAAGTTGTATATGGATTTTGGGTAGGATGGTTTGAAGACTATTGGTACCGTTTGAG ATGTGACTTTGGCCACATTTGACTTAATTAATCAAATTTGATTTCACATTAACTATATTATAAGTGTTTGCTGCAACTAG AAGTGATTAGCTGAGATCATATGTTTAGTTTTAATGTGAAACCTGCTTAGGTTGATTAGCTACTGATGGTATTAGTAATC TGAAGTTCTGGTTATATTTTAGAACCAGATTTTACTAAATAAGAGAAAACTGGTAGAAAGACCAGTGCAAATGTTGAGGA GCGTTGAGATTTTGTAGGGAGTAGCATCAGTCTATATTTAAAAGTCGGTTTCTTGATTCCTTCCATTAAGCAATTGTTTC AATAAGAATACTTCATTTCCATCTGTTTGAATCCGGATTTTGAGTTCTGGCGTAATAGTTATACCCGATTCGGAATCCTC ATAAACAGTGGACTTAACCAGTTTTGGGAGAAATTGACAACTTTCCAGTGAACCGGCATTTGAGTTTAACTTGTACTACT TGCAGATTCAGCTAAACATAACTGGGGATAAAAGAAAGAAAGAAGAGGTTGTCATGTTGTGCTTTGGGAATAAGGATGGT AATGAGTGGGATCTTAGAAGGCTACCCGTCCCCCAACCCGTACTTAAAAAAAATGCCCATATCCATACTTTAATGCCCAT ACCTTTACTCACTTGGTACCTAGATGGCCATACACAAACTCATTACCCACATTTTAGTCAACTTAAGTACGACCTCCCAT GATATATTTGTGAGACAAACTAATAAAACATTAATGCTATTATAATATTAACGCTAAGTGAAAAATCAGCCAAAAAATGC TTTCATTGAAAGTTAAAAAATGTTCATAGATCATTCACTTCTTAATTATAAATCAGTACAAATAGAACTACTTAATTTAA TTTACAAATTGTAAATACAAATACTATTTATATCTTCTGTATTATATGGATATGTTCAAGTGTATTTTATTCAATCTAAC AATAACCGAGCCGGATCTGGTGTATCATTAGGGATTTGCCAGTTTCTCCTCAACAAATAAAATAAGTGATTGGGCAACAG AGATCCTACCTAATGGAGAGATAGTTGGAGTGATGTCCCGAATTCTAGTTGATAATGTTTCCCTCTTCCTCGGAGAAAGA CGATGTCTGCTGGTTGGTAGTGTGAGGACTCGTAGTACCTGCGTACCCAAAAGAAAAGGATGCGCTTATTAAAAAACAGG CGATTGCCTGATGATATAACTAGCAAATATGTTTCTCCTCATGTCAATATATTTTATTGTTTAGGGGGGGATTACACTTA CTCATTGAATAGTGATGTTACCATTTAATGTTTCTGGAATTTTAGGCAGTTTTTAGAGACTATCCTTTACCCACACACAC ACACACACACACATGAGGAAGTGTTAGGATGTTTATTCAACTAATATTTATGTTTCTGATTTTTCCAGGGAGGGGGAGTT TTCACAAACTGCATGTAAGATCCCTTTTTCATCTGCCTCCAATTTTTTTAACACCTGCACTGCACTGCACTGAATATATT AATTTACTGGAATGATGCGATGCAGATCATGATATGTTGGGACAACATGCTATTTTTGCTGAACATACAGCTGTATCATC TGGTAGTCATCACTGCCCATATATTGCTTATGTTGGGCCCATACATCCATCTTCCTCCAATTCAGGTGGAACTGTATCAG AGGCTTCTAACTTCAACCATTGGAACGGTTCATCTGTGCCTAATGATATGCCAGCCTCCTTTACGTTTCCTGCTGTGGAT CTTCATTATCACGGTTGGGAACACCATTCCCCTCCTTTCTCTACGGCAAGCAGTCGTCTGGTGGCTGCTGATCAGCCCTC AGTATCACCTGGTAATCAAAGGCCAGTGAGGGGTGGTTCGGATGTACCGAGATCAGGATCTTTTATGCATCCCTTCCTTG TTGGTCACAGGTATTTAGAGTTTATGTACCTTATTCAAATTCATATGTTTGCATGGATTACTTGACTACCTGCTCATATG TACTCATTTTCAGTCTTACGGCGTTAAAATCCACAATATTTTTTGTTATATTAAACTAATATATGATAAATCATGTATCT CAGAATCTTCATTGGCTTATGAAAATTTTCTAGGTCATAATAAGATTGATATTCAATGCATTTTATGTTTTGGGGTACAA CATTCACTGCACATTTAATTTCTGCAGTTCTGCTGCCAGAGCAGGGAGTTCAGTTGCTTCCTCATTGATTCCTCCTTATC CTGGTAGCAATGCTCGGGCCCGTGATAGAGTCCAGGCTCTTCAAGCATACTATCAACCCCAGCAACCTCCTAATTCAACT ACAATGCGGACACCTATTGCTTCTGGAACCCGAAGACCCAGCATTCATGGCGGGTCAGCTCCATTAGCACCAGTGGCCAC ATCTCTAGACCAAAGCGGCGGCTTCTTTCTGATCCCTCCCAGCTCATCAGGACGCAATTTTCAAGAAGAAAACCATCTAC CTAGCCGCTACCATGTGTGGGAAAGAGACCACTTGCCTTCATTGTCACTGAACCATGTTGATAGAGATTCAGGTTGGAGA GCATACCACCAGACCTTCAGCAGGCCAGACCCAGCTACCAGGTCCAGCAGCTTTCGCTCGAGGCACGGATCAGATAGAAT GCCTTCACAAAACCGGTAA
CDS sequence (LotjaGi5g1v0224800.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGTCTTGGTAACAACGAGGACGAGGATAATCAAGTGGTAGATGGAGGAGATGGTGGCGGAGCCAAGGGTTTCGGTTC AGTGTCTTGCTCAATTTGCCTTGAGGTTGTTGCTGACAATGGGGATAGATCCTGGGCTAAGCTTCATTGTGGTCATCAAT TTCATCTGGATTGCATTGGATCAGCATTCAATATAAAAGGGGCAATGCAATGCCCTAATTGTCGGAAGATTGAGAAGGGT CAGTGGCTTTATGCCAATGGTGGTCGGTCATATCCAGAATTCAACATGGATGATTGGACATATGATGAGGACCTGTATGA TCTCAGCTACTCTGAATTGCAATCCTTTGGAGTTCACTGGTGCCCGTTTGGCAACCTGGCAAGACTTCCATCGCCATTTG AGGAGGGGGAGTTTTCACAAACTGCATATCATGATATGTTGGGACAACATGCTATTTTTGCTGAACATACAGCTGTATCA TCTGGTAGTCATCACTGCCCATATATTGCTTATGTTGGGCCCATACATCCATCTTCCTCCAATTCAGGTGGAACTGTATC AGAGGCTTCTAACTTCAACCATTGGAACGGTTCATCTGTGCCTAATGATATGCCAGCCTCCTTTACGTTTCCTGCTGTGG ATCTTCATTATCACGGTTGGGAACACCATTCCCCTCCTTTCTCTACGGCAAGCAGTCGTCTGGTGGCTGCTGATCAGCCC TCAGTATCACCTGGTAATCAAAGGCCAGTGAGGGGTGGTTCGGATGTACCGAGATCAGGATCTTTTATGCATCCCTTCCT TGTTGGTCACAGAGCAGGGAGTTCAGTTGCTTCCTCATTGATTCCTCCTTATCCTGGTAGCAATGCTCGGGCCCGTGATA GAGTCCAGGCTCTTCAAGCATACTATCAACCCCAGCAACCTCCTAATTCAACTACAATGCGGACACCTATTGCTTCTGGA ACCCGAAGACCCAGCATTCATGGCGGGTCAGCTCCATTAGCACCAGTGGCCACATCTCTAGACCAAAGCGGCGGCTTCTT TCTGATCCCTCCCAGCTCATCAGGACGCAATTTTCAAGAAGAAAACCATCTACCTAGCCGCTACCATGTGTGGGAAAGAG ACCACTTGCCTTCATTGTCACTGAACCATGTTGATAGAGATTCAGGTTGGAGAGCATACCACCAGACCTTCAGCAGGCCA GACCCAGCTACCAGGTCCAGCAGCTTTCGCTCGAGGCACGGATCAGATAGAATGCCTTCACAAAACCGGTAA
Protein sequence (LotjaGi5g1v0224800.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGLGNNEDEDNQVVDGGDGGGAKGFGSVSCSICLEVVADNGDRSWAKLHCGHQFHLDCIGSAFNIKGAMQCPNCRKIEKG QWLYANGGRSYPEFNMDDWTYDEDLYDLSYSELQSFGVHWCPFGNLARLPSPFEEGEFSQTAYHDMLGQHAIFAEHTAVS SGSHHCPYIAYVGPIHPSSSNSGGTVSEASNFNHWNGSSVPNDMPASFTFPAVDLHYHGWEHHSPPFSTASSRLVAADQP SVSPGNQRPVRGGSDVPRSGSFMHPFLVGHRAGSSVASSLIPPYPGSNARARDRVQALQAYYQPQQPPNSTTMRTPIASG TRRPSIHGGSAPLAPVATSLDQSGGFFLIPPSSSGRNFQEENHLPSRYHVWERDHLPSLSLNHVDRDSGWRAYHQTFSRP DPATRSSSFRSRHGSDRMPSQNR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 15 | 423 | 409 | 1.4E-235 | – | |
| PANTHER | 15 | 423 | 409 | 1.4E-235 | – | |
| SUPERFAMILY | 25 | 77 | 53 | 1.73E-13 | – | |
| Gene3D | 26 | 84 | 59 | 3.9E-12 | ||
| Pfam | 29 | 75 | 47 | 5.4E-8 | ||
| SMART | 30 | 74 | 45 | 6.7E-7 | ||
| ProSiteProfiles | 30 | 75 | 46 | 12.076 | ||
| CDD | 30 | 75 | 46 | 1.257E-9 | – | |
| MobiDBLite | 230 | 254 | 25 | - | – | |
| MobiDBLite | 230 | 248 | 19 | - | – | |
| MobiDBLite | 305 | 319 | 15 | - | – | |
| MobiDBLite | 305 | 328 | 24 | - | – | |
| MobiDBLite | 394 | 423 | 30 | - | – | |
| MobiDBLite | 399 | 423 | 25 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi5g1v0224800.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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