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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0228400 |
| Transcript ID | LotjaGi5g1v0228400.4 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Importin subunit alpha; TAIR: AT3G06720.1 importin alpha isoform 1; Swiss-Prot: sp|Q96321|IMPA1_ARATH Importin subunit alpha-1; TrEMBL-Plants: tr|G7I9F7|G7I9F7_MEDTR Importin subunit alpha; Found in the gene: LotjaGi5g1v0228400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:53555090..53558636) extracted from Lotus japonicus Gifu genome v1.2.
ATGGTTGCGGGTGTTTGGAGTGATGACAATAGCATGCAGCTTGAATCCACGACGCAGTTTCGCAAGCTGCTTTCGATTGG TTCGTGATTGATCTCTGTACCTAATTTATTATGTAGTGAATTTTAATTGACCTTTGGTTAACTTGTTTTTGTTTGTGTGT GTGTGACAGAACGTACTCCGCCGATTGAGGAGGTTATACAGTCTGGTGTAGTTTCCCGCTTTGTCGAGTTTCTGATGAGG GAAGACTTTCCGCAATTGCAGGTACGTCGTGAATAATGCATTGTTTTGTTGATGGTTGAGTAATTACTATGTTACTTATG CTGATTTGTTGACTTGGCATGTCTGTTGTCGTTTTGCAGTTTGAGGCAGCTTGGGCTTTGACAAATATAGCTTCGGGAAC ATCGGAAAACACCAAGGTGGTGATTGATCATGGGGCTGTCCCGATTTTTGTGCAGCTTCTCGCTTCTCCTAGTGATGACG TCCGTGAACAGGTATATTTTATATATCTTAACATATCATCACTTACCTATAAAATGCAGACACGTTAGGAAACTGAGATT CCTTTTTTAATATCGAGGATTTGGGGTACAACCTTTTCTTTCTGGCGTTAATGAAATTAAAACGATAACTCTTGGGCTAT GAAACTTGTTTGTTCATGTTGATTTTTACATTTGGGTATACTTCTGTAGTTGCAGTGTAGTTATGAGCATGCAAAAGAAG AGGGGTCGGTGGGTGATCTATTTGCTTGTGCTGAGTGGTTTTATTTAAAATATGTAGCTGCCATCAAAAGAAAGATAACA ATACGTCAATGCCTTTGTCGCATTGTACCAGGGTATCTTTTATCAACAGCCTAACATTTCTCACTGTGTTTTGGATACTA ACAGGCAGTGTGGGCATTAGGAAATGTTGCTGGGGATTCTCCTAGATGCCGTGATCTTGTTCTTGGTAATGGGGCTTTGA TTCCTCTGTTGGCACAATTGAATGAACACGCCAAACTTTCTATGCTAAGAAATGCTACCTGGACACTTTCAAACTTCTGC AGGGGCAAGCCACAGCCTCCATTTGATCAGGTATGAAAATGTGCATTGCTCAATCTCTCTGAATAACTAAATCATGGCGT TATTTTTTTAAGCCCTTGTTTTTCTTTATCATGATGCACTTCTGTCAAAGTTGAAATGGTACTTTCATGTTGTCAGATCC ATATGAAATAGAAAGGGAGATTACATTACTTGGTTCTATTCTTTTGAATTATTTGTTGAATCAAGAGTACGTGTGTTTAC CCTGTAGTTTAGAATGTCATGTTCTTGCTATCTTGCATGATATGGAATATCTAAGTACAGTTGACCTTGTGATCTGATGA ACAACATTATTCATCATCTTCTTCTTTTGATGCATTTTTATTATGAATATGCGAAGTTTGTAGCCTTTTCAATCTAATTG TTCATGGTTATTCTTCTATGTGAAGTATTGAGCAAGTAACAGCCACCCTTGTAACTTGTAACATGAAAAAGGAACCTGGA GGGTTGTCCATTGGCTAATTCGTTGGTTTTTCCTGTATCTATTTTCCTGATTGTGTCATGCTAGCTGCTATTATGCTCTA CTTTACACATCATACATTTTTCTTTTTTTAATAGGTTAAACCTGCACTTCCTGCTCTCACTAGTCTAATCCATTCAAACG ATGAAGAGGTATTGACTGATGCCTGTTGGGCACTTTCATATCTTTCTGATGGTACAAATGATAAAATTCAAGCTGTCATT GAAGCTGGTGTGTGCCCCCGGCTTGTTGAGCTGCTACTGTGAGTACTTGACATCTCATATATGATATATGGCTGTGCAAT AATGAATGGGCCCCAGTGGCATTTTTCTGTCAAACTAAGTGTTCTTCTCTTGTTCAGGCACCCATCTCCTTCAGTGCTCA TTCCTGCTCTTCGCACTGTTGGAAATATTGTCACTGGAGATGATATGCAAACTCAGGTATTAAGTTGTGGAATGTGTCAT GGTTGCTTTGTTATATACAGCACTTTTCTTTTCAGTTGTGGAGTCATATGCTCATTGAATGCCCTTATTTGTAACCTTTT TTATGTTTATTATCTTTTATTTTGCCATTTGGTGTGTGTTGTAGCTGTTGGGTAAAGTTACGTGAATTGTGAGTTGTTTT ATATTGTACTGCTAACATGCCCCCTCACACGAGAGCCCATTGGGTTTGAAGTGTGACAATGTATAGGCTCACCCACCTTG TGCTTCTTCAATTCAACTTTGTGTTAAAACAAATTGAGGGCAATATCGATCGAACTCTATAGTCTAGAAGCTCTGACACA CGAATAGTTTTATGTTAATACTTCTAATTATATGTCAATAGTTTTTTTTATATTACAAGTGTTTTGCTGGTTTATAATTC ACTGGCCCCCCTCTGATTCATATCATAGAAATATTCTTGCCTAAGTCATGCCAAATCTTTCTACGGACTGGATTGGAGCT GTATGGATAAAGGATTTTCTCTGGAATGTGATTTAATCAGCTTTGTAATTTTTTATTCTTATATTTAGTACCCTTTTTCA AGTGCTAACTGCTACAGTCAGTAAGTTCCTTCTGAGACTACCTAATCATGTCTATATTTTGGAAATGATATTTGTCAGCG TTGAAACTTGCTTTGCATAATTTATGTTTTTGGTTTGTTTGTTTAACCTAGTGCATTCCCTTGTAGGTTATAATTAACCA TCAGGCTCTTCCTTGCCTTTTGAATCTGTTGGCCAGTAATTATAAAAAAAGCATTAAAAAGGAAGCTTGTTGGACCATAT CAAACATCACAGCTGGGAATAAACAACAAATTCAGGTATAGTTGTTCACTTTATGATAGTTAGACTTAGAATGATGTTTC TCTCTTTAAGTTATGATTGCACTATTGTTTTCTTATTTTCTTAAATTCCTGTTAATCAACAGTCTGTGGTTGAGGCCAAT ATAATTGGTCCTTTGGTGAACCTGCTTCAAAATGCTGAGTTCGATATCAAAAAAGAGGCTGCGTGGGCTATCTCAAATGC TACATCTGGTGGCGCTCATGAACAAATCAAGTATGGGGAGACACGTTTTCAATATTCATGAGGAGGTTATTATGGTGTTA TAATGTACTTTTTCTTGCGAGTTATGGACTGTTTTCCCTTGTTGACAGGTACCTAGTGAGTCAAGGGTGTATCAAGCCCT TGTGTGATCTTCTTATCTGTCCTGATCCTAGGATCGTCACAGTTTGTCTGGAAGGCCTTGAAAACATCCTGAAGGTAGGA GAAGCTGATAAAAATACAGGCAATTCTGGGGACGTGAATCTATATGCCCAAATGATTGATGATGCTGAGGGGTTGGAGAA AATTGAGAACCTTCAGAGTCATGACAACACAGAGATTTATGAAAAGGCAGTGAAGATTCTTGAAACGTACTGGTTGGAGG AAGAAGATGAGACTATGCCTCCAGGGGATGCTGCTGCTCAATCAGGGTTCAACTTTGGGGGCACTGAGGTTCCTTCTGTG CCTTCCGGTGGATTCAACTTCAATTAG
CDS sequence (LotjaGi5g1v0228400.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTTGCGGGTGTTTGGAGTGATGACAATAGCATGCAGCTTGAATCCACGACGCAGTTTCGCAAGCTGCTTTCGATTGA ACGTACTCCGCCGATTGAGGAGGTTATACAGTCTGGTGTAGTTTCCCGCTTTGTCGAGTTTCTGATGAGGGAAGACTTTC CGCAATTGCAGTTTGAGGCAGCTTGGGCTTTGACAAATATAGCTTCGGGAACATCGGAAAACACCAAGGTGGTGATTGAT CATGGGGCTGTCCCGATTTTTGTGCAGCTTCTCGCTTCTCCTAGTGATGACGTCCGTGAACAGGCAGTGTGGGCATTAGG AAATGTTGCTGGGGATTCTCCTAGATGCCGTGATCTTGTTCTTGGTAATGGGGCTTTGATTCCTCTGTTGGCACAATTGA ATGAACACGCCAAACTTTCTATGCTAAGAAATGCTACCTGGACACTTTCAAACTTCTGCAGGGGCAAGCCACAGCCTCCA TTTGATCAGGTTAAACCTGCACTTCCTGCTCTCACTAGTCTAATCCATTCAAACGATGAAGAGGTATTGACTGATGCCTG TTGGGCACTTTCATATCTTTCTGATGGTACAAATGATAAAATTCAAGCTGTCATTGAAGCTGGTGTGTGCCCCCGGCTTG TTGAGCTGCTACTGCACCCATCTCCTTCAGTGCTCATTCCTGCTCTTCGCACTGTTGGAAATATTGTCACTGGAGATGAT ATGCAAACTCAGGTTATAATTAACCATCAGGCTCTTCCTTGCCTTTTGAATCTGTTGGCCAGTAATTATAAAAAAAGCAT TAAAAAGGAAGCTTGTTGGACCATATCAAACATCACAGCTGGGAATAAACAACAAATTCAGTCTGTGGTTGAGGCCAATA TAATTGGTCCTTTGGTGAACCTGCTTCAAAATGCTGAGTTCGATATCAAAAAAGAGGCTGCGTGGGCTATCTCAAATGCT ACATCTGGTGGCGCTCATGAACAAATCAAGTACCTAGTGAGTCAAGGGTGTATCAAGCCCTTGTGTGATCTTCTTATCTG TCCTGATCCTAGGATCGTCACAGTTTGTCTGGAAGGCCTTGAAAACATCCTGAAGGTAGGAGAAGCTGATAAAAATACAG GCAATTCTGGGGACGTGAATCTATATGCCCAAATGATTGATGATGCTGAGGGGTTGGAGAAAATTGAGAACCTTCAGAGT CATGACAACACAGAGATTTATGAAAAGGCAGTGAAGATTCTTGAAACGTACTGGTTGGAGGAAGAAGATGAGACTATGCC TCCAGGGGATGCTGCTGCTCAATCAGGGTTCAACTTTGGGGGCACTGAGGTTCCTTCTGTGCCTTCCGGTGGATTCAACT TCAATTAG
Protein sequence (LotjaGi5g1v0228400.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVAGVWSDDNSMQLESTTQFRKLLSIERTPPIEEVIQSGVVSRFVEFLMREDFPQLQFEAAWALTNIASGTSENTKVVID HGAVPIFVQLLASPSDDVREQAVWALGNVAGDSPRCRDLVLGNGALIPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPP FDQVKPALPALTSLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDD MQTQVIINHQALPCLLNLLASNYKKSIKKEACWTISNITAGNKQQIQSVVEANIIGPLVNLLQNAEFDIKKEAAWAISNA TSGGAHEQIKYLVSQGCIKPLCDLLICPDPRIVTVCLEGLENILKVGEADKNTGNSGDVNLYAQMIDDAEGLEKIENLQS HDNTEIYEKAVKILETYWLEEEDETMPPGDAAAQSGFNFGGTEVPSVPSGGFNFN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 454 | 454 | 7.0E-276 | – | |
| PANTHER | 1 | 454 | 454 | 7.0E-276 | – | |
| Gene3D | 1 | 419 | 419 | 2.1E-216 | ||
| PIRSF | 1 | 454 | 454 | 4.1E-205 | ||
| SUPERFAMILY | 3 | 423 | 421 | 2.27E-119 | ||
| SMART | 28 | 69 | 42 | 1.1E-7 | ||
| Pfam | 30 | 69 | 40 | 1.9E-9 | ||
| ProSiteProfiles | 39 | 82 | 44 | 10.132 | ||
| SMART | 71 | 111 | 41 | 2.1E-11 | ||
| Pfam | 71 | 110 | 40 | 2.3E-13 | ||
| ProSiteProfiles | 82 | 124 | 43 | 11.427 | ||
| SMART | 112 | 154 | 43 | 0.31 | ||
| Pfam | 113 | 154 | 42 | 3.6E-8 | ||
| SMART | 156 | 195 | 40 | 0.0093 | ||
| ProSiteProfiles | 166 | 208 | 43 | 10.027 | ||
| Pfam | 167 | 195 | 29 | 2.2E-7 | ||
| SMART | 197 | 237 | 41 | 8.0E-7 | ||
| Pfam | 198 | 236 | 39 | 2.0E-9 | ||
| SMART | 239 | 280 | 42 | 2.0E-8 | ||
| Pfam | 240 | 280 | 41 | 2.1E-9 | ||
| SMART | 282 | 322 | 41 | 1.3E-7 | ||
| Pfam | 282 | 321 | 40 | 5.9E-11 | ||
| SMART | 325 | 365 | 41 | 6.7E-6 | ||
| Pfam | 327 | 363 | 37 | 4.6E-7 | ||
| Pfam | 380 | 424 | 45 | 1.6E-20 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Cellular component | Cytoplasm | All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. | ||
| Biological process | Protein import into nucleus | The directed movement of a protein from the cytoplasm to the nucleus. | ||
| Cellular component | Host cell nucleus | A membrane-bounded organelle as it is found in the host cell in which chromosomes are housed and replicated. The host is defined as the larger of the organisms involved in a symbiotic interaction. | ||
| Molecular function | Nuclear import signal receptor activity | Combining with a nuclear import signal (NIS) on a cargo to be transported, to mediate transport of the cargo through the nuclear pore, from the cytoplasm to the nuclear lumen. The cargo can be either a RNA or a protein. |
Expression pattern of LotjaGi5g1v0228400.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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