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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0231300 |
| Transcript ID | LotjaGi5g1v0231300.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | High mobility group B-like protein; TAIR: AT3G13350.1 HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain-containing protein; Swiss-Prot: sp|Q9LTT3|HMG10_ARATH High mobility group B protein 10; TrEMBL-Plants: tr|A0A0B2QUC4|A0A0B2QUC4_GLYSO High mobility group B protein 10; Found in the gene: LotjaGi5g1v0231300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:53871614..53874542) extracted from Lotus japonicus Gifu genome v1.2.
CCAGCCAACACAACACACACTAACTTTTAGAGCTAACTTAGTTACCCTCTCAAACTCAATCATGCAATGCAAGGAGAAAT TTGACTCGGAGGAGAGCTTCTACACCAAACTCATTGAGTTCTTGGAGTACTATTCTGGACTTACTCTAATGTGAGTGAGT TAATTCCATTACACAAAAAAATTAAAAGCTCTTCTTAATTTTTATCCTCAACGTGCCTTATTATTTATGAGTCAATTGTA CTTTTGCAGTTTCAATGTCCGAGAAACATTGTTGGACTTGTACCTGTTTTACTTGGAGGTCACCACAAGAGGAGGATATC ACCAGGTACATGCTTTCTCATGCTTCTATCAACATATCAAGTTTATAATCTATATTCATGGCAAAATTATTTTTTAATTT TTCGTATATTGTTAGATAAGTTTCTCTTAGTGTTGAGAAGTCTCATTAATTCGAGATATGACTAAGATGATAGTCTTTAT AAGGGTAAACCAATTTTTACCTTCAAGCTAGTGGGGTAGAGTTAGGCCTTCCATATCTAATATGTTATTATAGTCTATCC TTATCCTTGGATCGTTTACTAGAGACCACCAAATCTCATGTTTCAAATCTCAAGCCCTGGGTGGGGACTGGGGAGTGAGA GAGCGTATTGAGAAGTTTCACATTGACTAGAGATAGAGTGGTCAAGGTAGTCCTTATAAAGGGTAGAGTAATTCTCACAT CCAAGCTAGCTTTTGGGTAGAGTAATCTTTGATTCTGATACAGATGTTTCAATTTAGTATCATTGCTATTGTTATGGATG GATTCTGTTTCATGTTTTCAGGTTGGTCGAGATAAGAAATGGGGTGAAGTTGTCTCTGCACTGAAATTGGAAGGCAACAA TGCAAAGTTATCTGCTCAAGTTGAAATGCTCTATGCATATCTTCTTTATGATTTCGAGCAAATGTACTTCTTCCAGTGTC CAGCAAAGCAAGCCAGCACCAAAGGTTAATCTAAGAGACCAATTAGTAGCTTTACTTAGTATTGATTCAGTCTGGTATTT CACACATTTTTTTATTGTTTATTCTTAGCTTCTATATAAATGATTTTGATTTACCTTTACTGCTTGGACATAAAGAAAAG ACATTTCAATTTTTAGCAGCCCTATTGCATGATATTTGTTCTTTCATGGCAATCTAATTGCCGCAATACCAGAGAACATG AGAAAATTTCCACATGAGATTGAGAGGTTCCTGGTCCAATTTAGATAATTAGGGAGCAATGTAAGGTAATTATGAAGCTA AATTAGGAATGATTTTGCACTCATAAATGAATGAAATCAGCACAATAAGGGGTATAGGATTAGCATACGAGAAAAGATGA TAATCACTTGAGTATTATAAAGATGAATAGATGATGATCACTTGGCGTAGCTTGGTCTCTCTCCTAGGAGCACTAGGTGA ACAATATTGTTGTTGCATTTTGGTTTTAGGATGACTGTTTAACCTCAATGACTCTCTGTTTTCTCCACACCTTTCATCTT TTGTCAAAGGTCTCCTTAAGAGGAATCACAACCCAGCGGCTAGTCCATGTCAATTAATGAACATTGAAGATGGCCAAAGG GTGACACTGGGCAAGAACTGCTATTCCCAAGTGACAGGTTTGGTTACATTTTTGTACTTAGCTGCATACTTTTCAAATCC TAGGTAGGAGAACAGGCACAATTTTTCTTTGGTAACTTACCAAATTTTATTCAGAACTCCTGTAATACATGATCTATCGT CTTAAAGTATGACACCTGACTTTTATGATAAGTTATTCCCGATTTTGATTCTTTTTCTAAAATTAAAAAATGAGGATAAC TCTCAGATTATGAGAGGGATGTACTGAATGATATCTTGGAATGAGTACTGAAAATTTGCACGTAACTCAATGATATCTTG GGATGAGTTTAAAGGCTGTTCATGTGAATTTGAGGCACTTATGAATAACTTTGGATTCCAAGTTACAGCAGAGGCGGGAG AACAGCCGGTGCTTCTACCGGCGGCACCCTCAAATAACAAAGAAATGAAGAAGCGCAAAGGTGCTCCAGTGGGACAAAGG AATGCATATCAGATATTCCTCAAGAAGGAGTGTGCTCGATTGAGAGCTTGTCGTGAGGCCTCCTTAGATGGCACAAATAT CCGACGCAAGGCTACTGATGCATGGAAGAACATGTCTGAGATTGAGAAACAGGTACATTGAAATTGACACCACATCTAAT ATTCTTGACCCTTTGCCACTTCTGATTATTTTTTATGCAGCCATATGTGGATGAAAGCAAGAAGAGCAAGGAAAAATATA AGGAGGAAGCAAATGAAGCAATGATCACTAACAATAAGCAGCCGAGCGTGGAAGATGTCAAGGAAGAAAACAGGACTAGT TTCTGTGGTGATTATCGCGTAACATCACAACCTGAGGCAGATAACTCACTTGTCAATGCACAACTTGGCATAACTCTTAA AATGGCTGTAGAAGTACCCAAGGAGTCCTTAGAGGAATGGGATACTTATTTGTCACTAGATTTACCAACTGGTGAATCCA AGTAACTCTACTAACTCTAGTTTATGATCGGTTAGTCTTTTTTCTCTTTTGAGGCAATGACTCTGCATCCAGCAGTTTTG TCCCTTTTTTAGACTCAAAACCAAGCTACTAGGTTTATATGGTTTTGAAACAGCAGCAACAGACTTGGAATGGCTGAATA GCATGTTTCCTCGCCTCTTTCACTAGTGAATTATGTATATATTAAAGGCTTTAAGTGTAATGGCTGGATAGGCCTCTTTC ACCAGTGAAGTATGTATGTATTGAAGGCTTTAACTGTTAAGTGTAACTCAAACTCATGGTTTTGAAATAGCAGTAACATG GTTGGAATGGCTGGATATGCCTATTTCACTAGTGATGTATATATTAAAG
CDS sequence (LotjaGi5g1v0231300.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCAATGCAAGGAGAAATTTGACTCGGAGGAGAGCTTCTACACCAAACTCATTGAGTTCTTGGAGTACTATTCTGGACT TACTCTAATTTTCAATGTCCGAGAAACATTGTTGGACTTGTACCTGTTTTACTTGGAGGTCACCACAAGAGGAGGATATC ACCAGGTTGGTCGAGATAAGAAATGGGGTGAAGTTGTCTCTGCACTGAAATTGGAAGGCAACAATGCAAAGTTATCTGCT CAAGTTGAAATGCTCTATGCATATCTTCTTTATGATTTCGAGCAAATGTACTTCTTCCAGTGTCCAGCAAAGCAAGCCAG CACCAAAGGTCTCCTTAAGAGGAATCACAACCCAGCGGCTAGTCCATGTCAATTAATGAACATTGAAGATGGCCAAAGGG TGACACTGGGCAAGAACTGCTATTCCCAAGTGACAGAGGCGGGAGAACAGCCGGTGCTTCTACCGGCGGCACCCTCAAAT AACAAAGAAATGAAGAAGCGCAAAGGTGCTCCAGTGGGACAAAGGAATGCATATCAGATATTCCTCAAGAAGGAGTGTGC TCGATTGAGAGCTTGTCGTGAGGCCTCCTTAGATGGCACAAATATCCGACGCAAGGCTACTGATGCATGGAAGAACATGT CTGAGATTGAGAAACAGCCATATGTGGATGAAAGCAAGAAGAGCAAGGAAAAATATAAGGAGGAAGCAAATGAAGCAATG ATCACTAACAATAAGCAGCCGAGCGTGGAAGATGTCAAGGAAGAAAACAGGACTAGTTTCTGTGGTGATTATCGCGTAAC ATCACAACCTGAGGCAGATAACTCACTTGTCAATGCACAACTTGGCATAACTCTTAAAATGGCTGTAGAAGTACCCAAGG AGTCCTTAGAGGAATGGGATACTTATTTGTCACTAGATTTACCAACTGGTGAATCCAAGTAA
Protein sequence (LotjaGi5g1v0231300.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MQCKEKFDSEESFYTKLIEFLEYYSGLTLIFNVRETLLDLYLFYLEVTTRGGYHQVGRDKKWGEVVSALKLEGNNAKLSA QVEMLYAYLLYDFEQMYFFQCPAKQASTKGLLKRNHNPAASPCQLMNIEDGQRVTLGKNCYSQVTEAGEQPVLLPAAPSN NKEMKKRKGAPVGQRNAYQIFLKKECARLRACREASLDGTNIRRKATDAWKNMSEIEKQPYVDESKKSKEKYKEEANEAM ITNNKQPSVEDVKEENRTSFCGDYRVTSQPEADNSLVNAQLGITLKMAVEVPKESLEEWDTYLSLDLPTGESK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 2 | 106 | 105 | 1.3E-14 | ||
| SMART | 4 | 94 | 91 | 5.5E-7 | – | |
| PANTHER | 6 | 281 | 276 | 7.4E-95 | – | |
| PANTHER | 6 | 281 | 276 | 7.4E-95 | – | |
| ProSiteProfiles | 7 | 98 | 92 | 17.059 | ||
| SMART | 8 | 99 | 92 | 1.6E-10 | ||
| SUPERFAMILY | 9 | 99 | 91 | 8.63E-16 | ||
| CDD | 9 | 94 | 86 | 1.81533E-17 | – | |
| Pfam | 10 | 94 | 85 | 4.9E-10 | ||
| SUPERFAMILY | 155 | 236 | 82 | 1.24E-12 | ||
| Gene3D | 169 | 238 | 70 | 1.9E-12 | ||
| Pfam | 171 | 237 | 67 | 4.1E-9 | ||
| ProSiteProfiles | 171 | 240 | 70 | 11.309 | ||
| Coils | 222 | 242 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of LotjaGi5g1v0231300.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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