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LotjaGi5g1v0233000.2

Overview

Field Value
Gene ID LotjaGi5g1v0233000
Transcript ID LotjaGi5g1v0233000.2
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description Protein kinase; TAIR: AT3G05840.1 Protein kinase superfamily protein; Swiss-Prot: sp|P51137|MSK1_MEDSA Glycogen synthase kinase-3 homolog MsK-1; TrEMBL-Plants: tr|Q53VM0|Q53VM0_LOTJA Ser/Thr protein kinase; Found in the gene: LotjaGi5g1v0233000
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr5:54041792..54044915) extracted from Lotus japonicus Gifu genome v1.2.

GTGGTTTTTGAGAAGCTAAAAGAGAAAGGGAGTTAGTGGGAGATGGCTTCGGTTGGTGTGGCACCAACTTCAGGTGTGAG AGAAGCCAGTGGTTGCCATGGAGCAGCAGGTGTTGATAGATTGCCAGAGGAGATGAACGATATGAAAATTAGGGATGATA GAGTATGTCACATAGTTTCAGACTTATTCTATTTTGTGTTTGTGTGTGGTTGATTTTTAATTTCAGGCCCAGTTGCTTAC AGCTTTGCTTCTCTTGTTGTAGGAAATGGAAGCCACAGTTGTTGATGGTAACGATGTAACGGAGACTGGACATATCATTG TCACTACCATTGGGGGCAGAAATGGTCAGCCGAAGCAGGTATACCTTCTCCCTTTATTTTTCTATTGTCAAGGATGTCAT GTGAAATAATTCAACTCTTGCTTACTCACTTGCTGTGCTTACCTCATGCTTCTTTAACAGTTGATGCTTATTATTTTATT TGTTTGTGAGTGTTGTTGATATTTTGATTGAAAATAATTGTATATGTAAGTTTAACAAAAGAACCCTCAAGATTTGGGTA TCATGACAATACTTTTTTTACAGCGACTAACATGTAACTATTGCGGTGTTCAACATGTTTGTGTTGTGTCTATTGATTGG CAACCAACTATCCTTAGTATGTGTCTTGATACCAGCTGAGTGCATTGTGAACAAAATTTCATCCCAATCAATAAGAAGAG TTCTGTTCTCTTTTTTGTCTTTCTTAGAGCGCACGCTAATGGCTATTGTTGCCAATGAATATCTAGACATAGCTAGCAGT TACTAATTGGTGAAGATGTAAAGAATGTCTACATATTTACTGGCAGTATCTATTTGAATTCTTCTGTCAATATTTTGAAA TATTATTGCTTTAGAATAATTTTATCTCCTTTTTAATATTTCAGACTATAAGCTATATGGCAGAGCGTATTGTCGGGCAT GGATCGTTTGGAGTTGTCTTCCAGGTATCAACAATGTGTATCCAGTCAATTGGATGGGATGCGTTACTCTTGCGTTTTCA TTATGGTGGCTTGTGATGCCTTTAGCTCTAAAATTGTGCATGATTGTAGGCTAAATGCTTGGAAACTGGTGAAACTGTCG CTATCAAGAAGGTTCTTCAGGACAAGAGGTACAAGAACCGGGAGCTGCAGACAATGCGCCTTCTTGACCACCCGAATGTC GTTGCTTTGAAGCATTGTTTCTTTTCAACTACTGAAAAGGATGAACTATACCTTAATTTGGTACTTGAGTATGTTCCTGA AACAGTTCATCGTGTGATCAAACATTACAACAAGTTGAATCAAAGGTTACCACTGATTTATGTGAAGCTCTACACATACC AGGTATACAGTTTTACCCTTCCTGTATTCAACTTTCACCTTGTTGCGGTAGTAATAAATTTTATTTCTTTTGTTAATGTG TATTGCAGATCTTTAGAGCATTATCTTATATTCATCGATGTATCGGAGTCTGCCATCGGGACATCAAGCCTCAAAATCTA TTGGTATGACCTTTATCTTATTTTGCATTTATCCTCTCATTGATAACTTTCCCTCTTTTAGTTCAATTCTCATGCTTTAA AGTCATGGTTGTATTTAGAGTGGCTAAAAGATAGGAAATGGCACTAATTCAAACTCTGTTGAATTTTCTAACTGAATACT TCTCTTTGCAGGTCAATCCACACACTCACCAAGTTAAGTTATGTGACTTTGGAAGTGCTAAAGTCTTGGTATGTATCCTT CAATAATTTCTCTTCAACCTTATGTTGCCCCAGGTTAAATAGTAATTTTATTTTTCCCTAATTGGTCTTACTTTTGACAG GTAAAAGGAGAACCAAATATATCATACATATGTTCTAGATATTATAGAGCACCTGAGCTTATATTTGGAGCAACTGAGTA TACTACAGCTATTGATGTTTGGTCTGTTGGTTGTGTTTTAGCTGAACTGCTGCTTGGACAGGTTGGTAGCTGTTAATATG AGCTTCTTTAATTTGTGATTTAGCAGTATATTTCTTTTGAAATGTGTTTGCTTTTTCCAGCCTTTGTTTCCTGGTGAGAG TGGAGTTGATCAGCTTGTTGAGATTATCAAGGTAATCTTTATGATACTTATTTGCATTGGAGGTTTTTTGATATTGACAT ACTTGAATATTCTGGTAACTTGTAACAACATTATGTAATGCATATTGAGTTGTTGATCTTGTCATTTGATTTAGCATTTT AAGTTGAATTGGATTTGAGGACTTGATCAGTTGGATTGGTGGCCTTGCTTTTTCTTGAAAGAGCGCAAGTATCTTTAAAA TGTAAATGACCCATTTGTGGCTTGTTTTGATAGGTTCTGGGCACTCCTACAAGGGAAGAGATTAAATGCATGAATCCTAA TTATACAGAATTTAAATTCCCACAGATTAAAGCACATCCATGGCACAAGGTAGTATTAATAAATCTAATAGCATGTGATG CTTTATTCTCATGCTCATCATACTAATGTGTTAAAAAATCCTCATTCTAAATTATGTTTATGTTTGATTTTCTTCCTCTA GATCTTCCATAAGCGCATGCCTCCAGAAGCTGTTGATTTGGTATCAAGACTACTACAATACTCCCCTAACCTGCGGTGCA CAGCTGTGAGTACATGACTTCTTGCTAACCTTTTGTATCCACCTTAAAAACTAAAAATAGTGCTTCCCCTCAGTGGCGTA ATGATTCTGCAAGTTTGTATTTGGCAGTGTTGTGGCTTCTAATCTTGTTATTCAATGGCTGTTTCTCATCTTCTGAGGAT ATATATCATGTGTGTCTTTGCTTTACTTGATGCAGTTAGATGCCTTGACCCATCCTTTCTTTGATGAGCTTCGTGAACCA AGCACTCGCTTGCCAACCGGCCGTTTTCTTCCACCATTATTTAACTTCAAATCTCATGGTATGTTAATTTTGGAATAGGG AATTATGATTCTGGTCCTCTTTTGCTTTTCGTTAGTAGTTATGGCTAAATCTGTGTGTTGTTATTGGTGCCTGTGTACCA GAACTGAAAGGAGTCCCAGCTGAGATTTTGGTGAAATTGGTTCCGGAGCATGCGAGGAAGCAATGCCCATTTCTTGGCTT GTAA
Download Genomic Sequence

CDS sequence (LotjaGi5g1v0233000.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCTTCGGTTGGTGTGGCACCAACTTCAGGTGTGAGAGAAGCCAGTGGTTGCCATGGAGCAGCAGGTGTTGATAGATT GCCAGAGGAGATGAACGATATGAAAATTAGGGATGATAGAGAAATGGAAGCCACAGTTGTTGATGGTAACGATGTAACGG AGACTGGACATATCATTGTCACTACCATTGGGGGCAGAAATGGTCAGCCGAAGCAGACTATAAGCTATATGGCAGAGCGT ATTGTCGGGCATGGATCGTTTGGAGTTGTCTTCCAGGCTAAATGCTTGGAAACTGGTGAAACTGTCGCTATCAAGAAGGT TCTTCAGGACAAGAGGTACAAGAACCGGGAGCTGCAGACAATGCGCCTTCTTGACCACCCGAATGTCGTTGCTTTGAAGC ATTGTTTCTTTTCAACTACTGAAAAGGATGAACTATACCTTAATTTGGTACTTGAGTATGTTCCTGAAACAGTTCATCGT GTGATCAAACATTACAACAAGTTGAATCAAAGGTTACCACTGATTTATGTGAAGCTCTACACATACCAGATCTTTAGAGC ATTATCTTATATTCATCGATGTATCGGAGTCTGCCATCGGGACATCAAGCCTCAAAATCTATTGGTCAATCCACACACTC ACCAAGTTAAGTTATGTGACTTTGGAAGTGCTAAAGTCTTGGTAAAAGGAGAACCAAATATATCATACATATGTTCTAGA TATTATAGAGCACCTGAGCTTATATTTGGAGCAACTGAGTATACTACAGCTATTGATGTTTGGTCTGTTGGTTGTGTTTT AGCTGAACTGCTGCTTGGACAGCCTTTGTTTCCTGGTGAGAGTGGAGTTGATCAGCTTGTTGAGATTATCAAGGTTCTGG GCACTCCTACAAGGGAAGAGATTAAATGCATGAATCCTAATTATACAGAATTTAAATTCCCACAGATTAAAGCACATCCA TGGCACAAGATCTTCCATAAGCGCATGCCTCCAGAAGCTGTTGATTTGGTATCAAGACTACTACAATACTCCCCTAACCT GCGGTGCACAGCTTTAGATGCCTTGACCCATCCTTTCTTTGATGAGCTTCGTGAACCAAGCACTCGCTTGCCAACCGGCC GTTTTCTTCCACCATTATTTAACTTCAAATCTCATGAACTGAAAGGAGTCCCAGCTGAGATTTTGGTGAAATTGGTTCCG GAGCATGCGAGGAAGCAATGCCCATTTCTTGGCTTGTAA
Download CDS Sequence

Protein sequence (LotjaGi5g1v0233000.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MASVGVAPTSGVREASGCHGAAGVDRLPEEMNDMKIRDDREMEATVVDGNDVTETGHIIVTTIGGRNGQPKQTISYMAER IVGHGSFGVVFQAKCLETGETVAIKKVLQDKRYKNRELQTMRLLDHPNVVALKHCFFSTTEKDELYLNLVLEYVPETVHR VIKHYNKLNQRLPLIYVKLYTYQIFRALSYIHRCIGVCHRDIKPQNLLVNPHTHQVKLCDFGSAKVLVKGEPNISYICSR YYRAPELIFGATEYTTAIDVWSVGCVLAELLLGQPLFPGESGVDQLVEIIKVLGTPTREEIKCMNPNYTEFKFPQIKAHP WHKIFHKRMPPEAVDLVSRLLQYSPNLRCTALDALTHPFFDELREPSTRLPTGRFLPPLFNFKSHELKGVPAEILVKLVP EHARKQCPFLGL
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR24057
1 412 412 1.5E-272 –
PANTHER
PTHR24057:SF41
1 412 412 1.5E-272 –
MobiDBLite
mobidb-lite
1 30 30 - –
Gene3D
G3DSA:3.30.200.20
60 155 96 6.7E-35 –
CDD
cd14137
71 363 293 0.0
IPR039192
SUPERFAMILY
SSF56112
75 386 312 1.2E-89
IPR011009
ProSiteProfiles
PS50011
76 360 285 44.329
IPR000719
Pfam
PF00069
76 360 285 6.9E-65
IPR000719
SMART
SM00220
76 360 285 3.6E-92
IPR000719
ProSitePatterns
PS00107
82 106 25 -
IPR017441
Gene3D
G3DSA:1.10.510.10
156 404 249 5.3E-81 –
ProSitePatterns
PS00108
197 209 13 -
IPR008271

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0004672
Molecular function Protein kinase activity Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP.
Subterm of
GO:0005524
Molecular function ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
Subterm of
GO:0006468
Biological process Protein phosphorylation The process of introducing a phosphate group on to a protein.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi5g1v0233000.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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