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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0238500 |
| Transcript ID | LotjaGi5g1v0238500.2 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein; TAIR: AT1G14650.1 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein; Swiss-Prot: sp|Q8RXF1|SF3A1_ARATH Probable splicing factor 3A subunit 1; TrEMBL-Plants: tr|V7BB20|V7BB20_PHAVU Uncharacterized protein; Found in the gene: LotjaGi5g1v0238500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:54672241..54676829) extracted from Lotus japonicus Gifu genome v1.2.
TCAATAGATACGAGCCCATCCCTCTTACATTCGCTCTGATTTTTCTTGCTTCAGATTCACTTCCCTTTCGTTCTCTCTGT TTTCGATTAGCAGCAGCATCTGTGATTCGTCGTTCATTCTCTCACTGTCTCTTCTTCTTCGCAGATTCGATTCTCCATCA CCCAGTCTGCGGAACAATCTGGTAAATCAGAAATTCTTCTTCTTCTTCTTCTTCAATTTTTCTCTCTAGATTTGAACTCC ATAGCTATGAATGAAACTTACTAAACCCTAATTTTATTGTTCTCTCAACAAATCAATTTGCATCTGAAAATTTGTGAAGT CTATACATATTATCATCATCTACAACAATTAGGTCTTGTTTCGTTACAGAACTTGATGTATTTCCCACTTTCATTTTCGT TGCAGGGTTTTAGGGATTTACAGTCACCATCACTATGCTAGGTTCATTGCCTATACTGCCTCTCCCGGCTCCTCCGCTAG ATGGAAACCTCGGTCCGCTTCCCGAGTCTCAGGTGATCGAGGAGAGACCCTCCGATGGGGAGCAGAGACCGGCGACACTA GCAGCAACAGTTGCCACACACACTAGAACCATTGGAATAATTCATCCACCTCCGGACATTAGAACCATTGTTGATAAAAC CTCGCAGTTTGTGGCTAAAAACGGTCCGGAATTCGAGAAGAGGATTGTTGCGAATAACGCGGGGAATGCCAAGTTTAATT TCCTTCACTGTCCGATCCGTATCATGCTTATTATCAACATCGCTTGGCTGAATTTCGTGCTCAGAATCAGTCTTCTACCC AGCAACCTGGTGACTTGGCTGGAGATTCGGATGTTCCTGAATCAACCCCATCAGCACCAGCCCCTGATAGTAATGGTGTA GTAGAAGCAGCAGGAGAAAAGCCTGATATTTCTGCCCAGTTTAGACCAGTAAGGAAAGTGCTTGACCCGCCTGAGGCTGA GCAATACACGGTTAGGCTTCCTGAAGGAATAACAGGGGAAGAGCTGGATATTATAAAGCTTACAGCGCAGTTTGTGGCTC GAAATGGGAAATCTTTTTTGACGGGATTGACTAGTAGGGAAGTTAATAACCTCCCGTTCCATTTCTTGAAGCCGACCCAC AGCATGTTTACATTTTTTACTTCCCTTGCGGATGCGTATTCGAAGGTTTTGATGCCTCCAAAGGGTTTGACAGAGAAGCT TAGGAAGAGTGTCCCTGACATGACTACTGTCCTTGAAAGGTGTGTGAACAGGCTGGAATGGGAGCGTTCGCAGGAGCAAG CTAGGCAAAAGGCTGAGGATGAGATCGAGCAGGAAAGGATACAAATGGCTATGATTGATTGGCATGATTTTGTGGTGGTT GAAACAATAGACTTTGCTGACGACGAGGATGAAGAGTTACCTGCTCCTATGACCCTTGAGGAGGTGATAAGGAGAAGCAA GGTGTCGTCAGCCATGGAAGAAGATATTGTTGAGCCTGGAAAGGAAATGGAAATGGATATGGATGAGGAAGAGGCCCAGT TAGTTGCAGAGGGCATGAGAGCTGCTAGTTTGGAAGACAAGGATGATGGGAAGAAGAACGAAATGAGGGTTACTGAAGAC CCTGAACCGCCAATGAGGATTGTGAGGAACTGGAAGAGACCAGAGGACAGAGTTCCTGCACAAAGAGATCCAACCAAGTT TGTTGTTTCTCCTATCACTGGTGAGCTAATTCCTATTAGTGAAATGTCAGAACATATACGAATTTCTCTCATTGATCCTA AATACAAAGAACAAAAAGAAAGGATGTTTGCCAAAATTCGAGAAACAACTCTGGCTCAGGATGATGAAATCTCAAGAAAC ATTGTTGGACTTGCTAGGACTCGTCCTGATATCTTTGGTACAACGGAGGAAGAGGTTTCCAATGCTGTCAAGGCAGAAAT TGAGAAGAAAAATGATGAGCAACCTAAGCAGGTTATATGGGATGGTCACACTGGAAGTATTGGCCGTACTGCAAACCAAG CCATGTCACAGAGTATTGGGAGTGAGGATCAAAATGATGCTTCTAACTATGAAGGCAAGAACCTTCCTGGTCCTGCTGCA CCCCCTCCAAGGCCCGGCATGCCTTCAATTCGTCCTCTTCCGCCACCACCGGGACTAGCATTGAATCTTCCTCGTGTTCC TCCCAATGTCGTTCAGTATCAGCACAGTGGCGGCCTTCCAATGCCTCCTCCAAGACCACCAGCTATGATTCCATCTGTCC GCCCAGCTCCCCCTCCTCCAATGCAAATGAATTCTGGACAGCAGTCTGTTATGGGTGGTCAACCACATCCGATGATGCCT CCATCAATTTCTATGAATAGCCAAGGAATGCACATGCCTCCACCACCACCTGGATCTCAGTTCACTCCTGTTCCACGGCC TCCTTTTGTTCCTATGTCTCATCCACCATCAATGATGCCTATGATGCATCCACCACCCTTGCCTCAAGGAATGCCACCAC CCCCACCGCCTGAAGAAGCTCTTCCCCCACTTCCAGAGGAACCAGAACCAAAGAGGCAAAAGCTTGATGATTCTTCTCTG ATTCCAGAAGATCAATTTCTGGCTCAGCATCCGGTATGGAGTTACTTAATTAACAATTACCTCTTAATTTTTCAAATTAA GTTATACATTGCATCATATTTACCAGCAGTATTATACTGTTATTTATGTTCATCACTTCATCCTAATTTGAATTTTGTGG TCTTTCACTCAGGGACCTGTTCGCATCAGTATATCTGTTCCTAATGTTGATGAAGGAAATCTCAAAGGACAAGTTCTGGA AATAACCGTGCAATCTCTGTCTGAAACTGTTGCCAGTCTGAAGGAAAAAATTGCTGGGGATATCCAGCTCCCTGCTAATA AGCAGAAATTGAGTGGAAAGCCAGGCTTTCTTAAGGATAATTTGTCACTTGCTCATTACAATGTCAGCGGAGGAGAAACA CTTACCCTATCCTTAAGAGAGCGTGGTGGTAGAAAGAGATGAGCATAGTACTTGCATTGCCATTCATGAAGGTTGTTGTA ATCTTTGCCTCATTATATGAGACACATGAATTTTTCGAGCATCGATGGACAACTTGATGCTATCCATGAATTTTATGTTA TACATTATATTTACTGTGTTGTGAGGCTTCCTGATGTTTTTATTGTTACCTTAAAGACTGATATTAATTCTGGAATACAG ATTTTGGCACCTTGGCGCATGTCTCATGAGGGGATTGGGAAGTAGTGGAGTTTCTTTACCTAATCTGATCAAGTCAAACA ATCACATCACTGATTATTGTTCTCTCTTGCTTAGTGACTTATTTGTTTTTAATTGAATCTCCTTTGCTGTCAGGGAGGGA TCAATCACTTTTTTGCTCATTTTTCCCATTCTTACAATTATCAACGTGAGTGGTGATTTAGTTTCTTTTTTCTAGTGTTT ACGTTTTGTCTTATATTGGATATGTTCTGACAAGAACACTGTCAGATGGTTGGTTAGGAGGTCGTTTAACTGGTGCATCT TGTTTGGGGTTTTGGTCATGAGAGGTTGTTTTAGTTTGTTGTTATTTATCCTTAACTTAGACAAGTTGTGGTTGGGATGG TTATTGTATTTTGATTATGCTGTTTTATCATAACAGAAATTCTACTTGGACTCGTGGGAAGGCCGGGCAGCTTAACTTGA TGTTTTTTTTTGAATTGGATGAGGCAGGTAGAATGGTCTACAATATTTTCTGCTGTTATAAACTTATGATCCCTACATCT AGATCTGTTACTTTTTATTCTTCAAGTTCTGTTCTGATGGCAGTTTGTGCCTGCCAATATGTTGCAGAATGGAGCAGGTA TGATATTTTAAAGAACGCACTGATTCACATGTTCATCTTTCTTGGGACATCTTATTAATCTCAGTTTAAGATCTCGTCAT TGATCTTGATCAAGATTATTTATCTTTGTTAAATCTCAATCTTCTTCATTTGATTTGATTTCTGAGTTGATATTTGATCT GTGTCTTTCCTTTTGATTCATTTGGTTGAACCTTACTTTGGATTTCTTAATGGATCAGCATGACAGATTCATTAGAGTCA TTTGACCCTCCACAGCTTCACTAGTATTATGTTCGTTTTATTCACTAGGTTACTTATTGTGGAAATAGGGGACGACTACA TCGATTGATGATGGTATTGGTGTTATCATGGTGGTTCTTACACTCACTTATGTGATACCCTTTTCGATTTCTCTACCGGG TGTTATAGTAGCTGGGATTTTAAGCTATGAAACAAGTCATTTTGGAATTTAGCATATGGTAAGGAGATAGGTAGTTTGGA TGAAGTTTGTTCAAATTTCTGTGCCGTAGTTTTACAATGAAATGCTTGTGTTTGGTTATTTTAGAGTGTTGTAAGCCATA GTCAATTTCATGGCTGTCTTATGGAATGGAAATCATAACATGGCTATTGTTGATGATAATTGGAGATCCATTTTAGATTT ATTGGCGGGAATATTAAGCTATTTATGGAGGTCTGTTTGTTGAATAAGTGTATTTTTGATTTTACATATTATACATGTTT GTGTCTATGATTTAGGCATGTTTTCAAAA
CDS sequence (LotjaGi5g1v0238500.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTTACATTTTTTACTTCCCTTGCGGATGCGTATTCGAAGGTTTTGATGCCTCCAAAGGGTTTGACAGAGAAGCTTAG GAAGAGTGTCCCTGACATGACTACTGTCCTTGAAAGGTGTGTGAACAGGCTGGAATGGGAGCGTTCGCAGGAGCAAGCTA GGCAAAAGGCTGAGGATGAGATCGAGCAGGAAAGGATACAAATGGCTATGATTGATTGGCATGATTTTGTGGTGGTTGAA ACAATAGACTTTGCTGACGACGAGGATGAAGAGTTACCTGCTCCTATGACCCTTGAGGAGGTGATAAGGAGAAGCAAGGT GTCGTCAGCCATGGAAGAAGATATTGTTGAGCCTGGAAAGGAAATGGAAATGGATATGGATGAGGAAGAGGCCCAGTTAG TTGCAGAGGGCATGAGAGCTGCTAGTTTGGAAGACAAGGATGATGGGAAGAAGAACGAAATGAGGGTTACTGAAGACCCT GAACCGCCAATGAGGATTGTGAGGAACTGGAAGAGACCAGAGGACAGAGTTCCTGCACAAAGAGATCCAACCAAGTTTGT TGTTTCTCCTATCACTGGTGAGCTAATTCCTATTAGTGAAATGTCAGAACATATACGAATTTCTCTCATTGATCCTAAAT ACAAAGAACAAAAAGAAAGGATGTTTGCCAAAATTCGAGAAACAACTCTGGCTCAGGATGATGAAATCTCAAGAAACATT GTTGGACTTGCTAGGACTCGTCCTGATATCTTTGGTACAACGGAGGAAGAGGTTTCCAATGCTGTCAAGGCAGAAATTGA GAAGAAAAATGATGAGCAACCTAAGCAGGTTATATGGGATGGTCACACTGGAAGTATTGGCCGTACTGCAAACCAAGCCA TGTCACAGAGTATTGGGAGTGAGGATCAAAATGATGCTTCTAACTATGAAGGCAAGAACCTTCCTGGTCCTGCTGCACCC CCTCCAAGGCCCGGCATGCCTTCAATTCGTCCTCTTCCGCCACCACCGGGACTAGCATTGAATCTTCCTCGTGTTCCTCC CAATGTCGTTCAGTATCAGCACAGTGGCGGCCTTCCAATGCCTCCTCCAAGACCACCAGCTATGATTCCATCTGTCCGCC CAGCTCCCCCTCCTCCAATGCAAATGAATTCTGGACAGCAGTCTGTTATGGGTGGTCAACCACATCCGATGATGCCTCCA TCAATTTCTATGAATAGCCAAGGAATGCACATGCCTCCACCACCACCTGGATCTCAGTTCACTCCTGTTCCACGGCCTCC TTTTGTTCCTATGTCTCATCCACCATCAATGATGCCTATGATGCATCCACCACCCTTGCCTCAAGGAATGCCACCACCCC CACCGCCTGAAGAAGCTCTTCCCCCACTTCCAGAGGAACCAGAACCAAAGAGGCAAAAGCTTGATGATTCTTCTCTGATT CCAGAAGATCAATTTCTGGCTCAGCATCCGGGACCTGTTCGCATCAGTATATCTGTTCCTAATGTTGATGAAGGAAATCT CAAAGGACAAGTTCTGGAAATAACCGTGCAATCTCTGTCTGAAACTGTTGCCAGTCTGAAGGAAAAAATTGCTGGGGATA TCCAGCTCCCTGCTAATAAGCAGAAATTGAGTGGAAAGCCAGGCTTTCTTAAGGATAATTTGTCACTTGCTCATTACAAT GTCAGCGGAGGAGAAACACTTACCCTATCCTTAAGAGAGCGTGGTGGTAGAAAGAGATGA
Protein sequence (LotjaGi5g1v0238500.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MFTFFTSLADAYSKVLMPPKGLTEKLRKSVPDMTTVLERCVNRLEWERSQEQARQKAEDEIEQERIQMAMIDWHDFVVVE TIDFADDEDEELPAPMTLEEVIRRSKVSSAMEEDIVEPGKEMEMDMDEEEAQLVAEGMRAASLEDKDDGKKNEMRVTEDP EPPMRIVRNWKRPEDRVPAQRDPTKFVVSPITGELIPISEMSEHIRISLIDPKYKEQKERMFAKIRETTLAQDDEISRNI VGLARTRPDIFGTTEEEVSNAVKAEIEKKNDEQPKQVIWDGHTGSIGRTANQAMSQSIGSEDQNDASNYEGKNLPGPAAP PPRPGMPSIRPLPPPPGLALNLPRVPPNVVQYQHSGGLPMPPPRPPAMIPSVRPAPPPPMQMNSGQQSVMGGQPHPMMPP SISMNSQGMHMPPPPPGSQFTPVPRPPFVPMSHPPSMMPMMHPPPLPQGMPPPPPPEEALPPLPEEPEPKRQKLDDSSLI PEDQFLAQHPGPVRISISVPNVDEGNLKGQVLEITVQSLSETVASLKEKIAGDIQLPANKQKLSGKPGFLKDNLSLAHYN VSGGETLTLSLRERGGRKR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 578 | 578 | 2.1E-146 | – | |
| PANTHER | 1 | 578 | 578 | 2.1E-146 | – | |
| Pfam | 32 | 245 | 214 | 1.1E-59 | ||
| Coils | 47 | 67 | 21 | - | – | |
| MobiDBLite | 293 | 330 | 38 | - | – | |
| MobiDBLite | 293 | 310 | 18 | - | – | |
| MobiDBLite | 315 | 330 | 16 | - | – | |
| PRINTS | 319 | 335 | 17 | 1.5E-9 | – | |
| PRINTS | 358 | 379 | 22 | 1.5E-9 | – | |
| PRINTS | 414 | 431 | 18 | 1.5E-9 | – | |
| PRINTS | 435 | 460 | 26 | 1.5E-9 | – | |
| MobiDBLite | 439 | 462 | 24 | - | – | |
| MobiDBLite | 439 | 475 | 37 | - | – | |
| Gene3D | 468 | 578 | 111 | 1.7E-35 | – | |
| SUPERFAMILY | 472 | 577 | 106 | 1.29E-22 | ||
| CDD | 492 | 572 | 81 | 2.01162E-29 | – | |
| SMART | 500 | 572 | 73 | 5.0E-11 | ||
| Pfam | 507 | 574 | 68 | 2.2E-9 | ||
| ProSiteProfiles | 520 | 576 | 57 | 14.97 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi5g1v0238500.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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