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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0239500 |
| Transcript ID | LotjaGi5g1v0239500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pectinesterase; TAIR: AT3G05610.1 Plant invertase/pectin methylesterase inhibitor superfamily; Swiss-Prot: sp|Q8GX86|PME21_ARATH Probable pectinesterase/pectinesterase inhibitor 21; TrEMBL-Plants: tr|I1JBB4|I1JBB4_SOYBN Pectinesterase; Found in the gene: LotjaGi5g1v0239500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:54756276..54758805) extracted from Lotus japonicus Gifu genome v1.2.
AAAACACACAGCTTTTACAAAACCGCTCGATCACCGGGTCAATGGTTAATTTATTTATTTTAAGAAACTCCATGGATATA TAAACCCTCCCTCACCTTCTCCATTCTTCACCATTGCCATCTCCTCAAAACACTAAACAGTGGGAGGAAACGTACCCTTT CGCATTCCTTCCCATTGAATTAAAAAAAAATTATATAAAAAAAAACATGAAAGGAAAGAAAGTAGCTTTTACAGGTTTGG CTGTTTTACTGGTGGTTGGTTGCGCCATTGGTGCCACCGTCTACACCACAAACAAGCCTCATGCCGCCGCTGCCGGTGCC GGTGGATCTGAAGTGAGCAACCACAACAAGGCAGTGACGGCACTCTGCGACGGTGCTGATGACAAGAAACTCTGCCATGA TGTCCTCACCCCTATCAACACCTCAGACCCTAAAGAATACGTGGCCGCGGTGGTCAAAACCTCCATGGACAGCGTCATCA AGGCCTTCAACATGAGCGACAGGCTCACCGTTGAGCATGAAAACAGCAACCCCGGAGTCAAAATGGCGCTCGAGGATTGC AAGGATTTGCTACAATCCGCAATCCAAGAGCTCCAAGCCTCCGGGGTTCTGGTGCAGGAGAGCAGCCTCCTTGATGTTAA CCAGCGCTCCGCCGAGCTTAAAAACTGGCTCAGCGCAGTCGTTGCTTACCAGCAATCTTGCCTGGACGGGTTCGACACCA AGGGCGAGAAAGAGGTCCAGGACAAGCTTCAACAAGGAAGCTTGGACGATGTTGGTAAACTTACTGGCTTGGCACTTGAC ATTGTTTCCGGAATCTCCAAGGTCCTCGGAGCTTTTGATTTCAACCTGCACCTGAAACCCGCTCGTCGCCTTCTTGAGAT TGATGCTGAAGGGTACCCTACATGGCTCTCTTTTGCTGATCGTAAACTCGTGGAGTCCAAGTCAAATGTTCTGCCCAACG CAATTGTGGCTAAGGATGGTAGTGGCCAGTTTAAGACCATTACTGAAGCCATTAACTCATACCCTAAGAAGCACCAAGGT AGATTCCTCATCTATGTCAAGGCTGGTGTCTATGACGAGTACATCAACGTTGACAAGAAGAAGCCCAACATTCTCTTGTA CGGTGACGGCCCTACCAAGACCATCATCACCGGAAACAAGAACTACGCCGCCGGTGTCAAGACCATGAGAACTGCCACAT TCAGTAAGTTAGCCATTCTGAGTCCTCATTTTCATTCATTTTTCTTATCTATCTATATTTCTTATCATATCATTCATTTT ATTTTTCTTTTCTATATATTTTGTCAAAATGAAGATGAAAGTGTAATTGATATGCGGAAATAATTTTTTTGGTCATTTTT TCAATTAATAGTCATTTTTTAGGGATAGTTGGTTACACATAAGATAATAATTCATTCATCTCTCATCTCATTTTCACGCA TTTTTCTTTGTGTATTGATAAAATTTGTGCAATGTGCAGCCACCCTTGCTCCAAACTTCATTGCCAAGTCAATTGCATTT GAGAACACCGCCGGGCCACAGGGACACCAAGCAGTTGCACTCCGTGTGAATGGTGACTGCTCAGCCTTCTTCGACGTCGC GATCCGCGGCTACCAAGACTCGCTGTATGCACACGCTCACCGTCAGTTCTACCGCAACTGCGAGATCTCCGGTACCATCG ACTTCATCTTCGGCTACGCCACCACCTTGATCCAAAACTCCAAGATCTTGGTCAGGAAGCCCATGTCAAACCAGCAGAAC ATCGTCGTCGCCGACGGTACCGCCCAGAAGAACATGCCCACCGGAGTCGTCCTCCAGAACTGCCAGATTCAAGCAGCACC TGAGCTCGCCGCCGACAGGCTCACCGTGAAGACCTACCTCGCTAGGCCATGGAAGGCATTCTCCAGAGCCGTGTTCATTG AAAACACCATCGGTGATTTGATTCAACCAGAAGGTTACATTCCATGGAACCCGATCGAACCTAACACCGAGAACGCTTAC TTTGCTGAGTTTGGAAACTCTGGACCCGGTTCAGTGACTCAAGCGAGGGCAAAATTTGGAAAAGGTTTGATTTCCAAGGC TGATGCTGAGAAGTTCACCGCTGAGCAATGGATCCAAGCTAGCACATGGGTCCCAGCTACTGGCATTCCTGTCGACCCTA CCTTCACCAAAGCTTAATTTGATTACAAAAATTCAAAGGCTTTGATTGAGTACGTAGTATACATATTATATAACTTTTCT TTTCTAGCAGAGTGAGAGATATATATTGAAATATTGAGTGCGTTTGAGGAGGTGATTTTATGAAGTATGCATATGCTCAT GCAACACTTCATTTGGTTTTTTATTTTGTTGACTAGATGATTCTTCTGTCGTCGGTGTGCGTTGTACACTGATGATGATG ATGATATTACTAGGGAGATGCAATGAATTGTTTCTTTCTTCCTGAATGATGGATCATGTAATCACGTTATATATCTCTTA TAATGATGCAATGATATTATTATATTGAAATTAAAATTTGAGTTATGCTA
CDS sequence (LotjaGi5g1v0239500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAAGGAAAGAAAGTAGCTTTTACAGGTTTGGCTGTTTTACTGGTGGTTGGTTGCGCCATTGGTGCCACCGTCTACAC CACAAACAAGCCTCATGCCGCCGCTGCCGGTGCCGGTGGATCTGAAGTGAGCAACCACAACAAGGCAGTGACGGCACTCT GCGACGGTGCTGATGACAAGAAACTCTGCCATGATGTCCTCACCCCTATCAACACCTCAGACCCTAAAGAATACGTGGCC GCGGTGGTCAAAACCTCCATGGACAGCGTCATCAAGGCCTTCAACATGAGCGACAGGCTCACCGTTGAGCATGAAAACAG CAACCCCGGAGTCAAAATGGCGCTCGAGGATTGCAAGGATTTGCTACAATCCGCAATCCAAGAGCTCCAAGCCTCCGGGG TTCTGGTGCAGGAGAGCAGCCTCCTTGATGTTAACCAGCGCTCCGCCGAGCTTAAAAACTGGCTCAGCGCAGTCGTTGCT TACCAGCAATCTTGCCTGGACGGGTTCGACACCAAGGGCGAGAAAGAGGTCCAGGACAAGCTTCAACAAGGAAGCTTGGA CGATGTTGGTAAACTTACTGGCTTGGCACTTGACATTGTTTCCGGAATCTCCAAGGTCCTCGGAGCTTTTGATTTCAACC TGCACCTGAAACCCGCTCGTCGCCTTCTTGAGATTGATGCTGAAGGGTACCCTACATGGCTCTCTTTTGCTGATCGTAAA CTCGTGGAGTCCAAGTCAAATGTTCTGCCCAACGCAATTGTGGCTAAGGATGGTAGTGGCCAGTTTAAGACCATTACTGA AGCCATTAACTCATACCCTAAGAAGCACCAAGGTAGATTCCTCATCTATGTCAAGGCTGGTGTCTATGACGAGTACATCA ACGTTGACAAGAAGAAGCCCAACATTCTCTTGTACGGTGACGGCCCTACCAAGACCATCATCACCGGAAACAAGAACTAC GCCGCCGGTGTCAAGACCATGAGAACTGCCACATTCACCACCCTTGCTCCAAACTTCATTGCCAAGTCAATTGCATTTGA GAACACCGCCGGGCCACAGGGACACCAAGCAGTTGCACTCCGTGTGAATGGTGACTGCTCAGCCTTCTTCGACGTCGCGA TCCGCGGCTACCAAGACTCGCTGTATGCACACGCTCACCGTCAGTTCTACCGCAACTGCGAGATCTCCGGTACCATCGAC TTCATCTTCGGCTACGCCACCACCTTGATCCAAAACTCCAAGATCTTGGTCAGGAAGCCCATGTCAAACCAGCAGAACAT CGTCGTCGCCGACGGTACCGCCCAGAAGAACATGCCCACCGGAGTCGTCCTCCAGAACTGCCAGATTCAAGCAGCACCTG AGCTCGCCGCCGACAGGCTCACCGTGAAGACCTACCTCGCTAGGCCATGGAAGGCATTCTCCAGAGCCGTGTTCATTGAA AACACCATCGGTGATTTGATTCAACCAGAAGGTTACATTCCATGGAACCCGATCGAACCTAACACCGAGAACGCTTACTT TGCTGAGTTTGGAAACTCTGGACCCGGTTCAGTGACTCAAGCGAGGGCAAAATTTGGAAAAGGTTTGATTTCCAAGGCTG ATGCTGAGAAGTTCACCGCTGAGCAATGGATCCAAGCTAGCACATGGGTCCCAGCTACTGGCATTCCTGTCGACCCTACC TTCACCAAAGCTTAA
Protein sequence (LotjaGi5g1v0239500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKGKKVAFTGLAVLLVVGCAIGATVYTTNKPHAAAAGAGGSEVSNHNKAVTALCDGADDKKLCHDVLTPINTSDPKEYVA AVVKTSMDSVIKAFNMSDRLTVEHENSNPGVKMALEDCKDLLQSAIQELQASGVLVQESSLLDVNQRSAELKNWLSAVVA YQQSCLDGFDTKGEKEVQDKLQQGSLDDVGKLTGLALDIVSGISKVLGAFDFNLHLKPARRLLEIDAEGYPTWLSFADRK LVESKSNVLPNAIVAKDGSGQFKTITEAINSYPKKHQGRFLIYVKAGVYDEYINVDKKKPNILLYGDGPTKTIITGNKNY AAGVKTMRTATFTTLAPNFIAKSIAFENTAGPQGHQAVALRVNGDCSAFFDVAIRGYQDSLYAHAHRQFYRNCEISGTID FIFGYATTLIQNSKILVRKPMSNQQNIVVADGTAQKNMPTGVVLQNCQIQAAPELAADRLTVKTYLARPWKAFSRAVFIE NTIGDLIQPEGYIPWNPIEPNTENAYFAEFGNSGPGSVTQARAKFGKGLISKADAEKFTAEQWIQASTWVPATGIPVDPT FTKA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 5 | 5 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 22 | 22 | - | – | |
| Phobius | 1 | 22 | 22 | - | – | |
| SignalP_GRAM_NEGATIVE | 1 | 22 | 22 | - | – | |
| SignalP_EUK | 1 | 22 | 22 | - | – | |
| ProSiteProfiles | 1 | 19 | 19 | 7.0 | – | |
| PANTHER | 5 | 562 | 558 | 2.6E-274 | – | |
| PANTHER | 5 | 562 | 558 | 2.6E-274 | – | |
| Phobius | 6 | 17 | 12 | - | – | |
| TMHMM | 7 | 29 | 23 | - | – | |
| Phobius | 18 | 22 | 5 | - | – | |
| Phobius | 23 | 564 | 542 | - | – | |
| TIGRFAM | 43 | 182 | 140 | 1.0E-15 | ||
| SMART | 45 | 199 | 155 | 4.4E-22 | ||
| Gene3D | 46 | 204 | 159 | 1.5E-14 | ||
| SUPERFAMILY | 47 | 201 | 155 | 6.8E-20 | ||
| Pfam | 49 | 199 | 151 | 1.5E-19 | ||
| CDD | 52 | 205 | 154 | 5.70245E-35 | – | |
| Gene3D | 245 | 561 | 317 | 1.4E-114 | ||
| Pfam | 251 | 546 | 296 | 6.8E-116 | ||
| SUPERFAMILY | 251 | 558 | 308 | 1.38E-96 | ||
| ProSitePatterns | 395 | 404 | 10 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Enzyme inhibitor activity | Binds to and stops, prevents or reduces the activity of an enzyme. | ||
| Molecular function | Pectinesterase activity | Catalysis of the reaction: pectin + n H2O = n methanol + pectate. | ||
| Biological process | Cell wall modification | The series of events leading to chemical and structural alterations of an existing cell wall that can result in loosening, increased extensibility or disassembly. |
Expression pattern of LotjaGi5g1v0239500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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