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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0241900 |
| Transcript ID | LotjaGi5g1v0241900.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing family protein; TAIR: AT1G52640.1 Pentatricopeptide repeat (PPR) superfamily protein; Swiss-Prot: sp|Q9SSR6|PPR78_ARATH Pentatricopeptide repeat-containing protein At1g52640, mitochondrial; TrEMBL-Plants: tr|A0A0B2QVF7|A0A0B2QVF7_GLYSO Pentatricopeptide repeat-containing protein, mitochondrial; Found in the gene: LotjaGi5g1v0241900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:55022197..55023768) extracted from Lotus japonicus Gifu genome v1.2.
ATGGCTATGCAGTCACTCTTCTCTAAATATAAAGTATTAACCTCTTCCTGTTGCCCTCTTGTCCAACACAAGCACTACTG CTATCCCTTTCACTCTTTCCCAGCCCCACAAGTGTCCGGCCTGTTATTACCGGACCTTGTGAATGAGATATCTCGTGTAG TCAGTGATCACCGGTTCCCTCACCATGATCTAGAACTCTCTCTCAATCCATTTTCAGCACAAATGTCCACCGATTTAGTT GAACAGGTTTTGAAAAGGTGCAATAAGCTTGGCTTCTCAGCCCACAGATTCTTTCTTTGGGCTAAATCAATTCCAGGTTT CCAGCATAGTGCTGAGAGCTTCAGCATTTTGGTAGAAATCTTAGGAAGTTGTAAACAATTTGCTATACTCTGGGATTTTC TTGTAGAAATGAGAGAGTCTTCTTGTTGTGAAATCAAGAATGATATCTTCTGGCTCATTTTCAAGGCATATAGCCGGGCT AATTTACCGGATGGCGCAATCCGGTCTTTCATTAGAATGGATGAATTTGGAATTAACCCAACTATTCATGATTTTGAGAA GCTTTTGTACTTTTTATGTAAAAGGAAGCATGTCAAACAGGCTCAGAATTTTTTTGATCAAGCTAAGAGTCGTTTCATGT TAACTGCTAAGACTTACAGCATTTTGATAAGTGGATGGGGTGAGATTGGTGATTCAGGGAAGGCACATGAGCTGTTTCAA TCAATGCTTGAGCAAGGATGTCCTGTGGATTTGCTTGCATATAATAGAATTTTAGACGCCCTCTGCAAAGGAGGTCGTGT GGATGAAGCTACAAATATTTTTCATGATATGCTGTCAAAAGGAGTTGAACCAGATGCTTTTACTTACTCAATATTCATTC ACGCGTATTGTGATGCAAATGATATACATTCAGCTTTCAGGGTTCTTGATAAAATGAGAAGATGTAGACTTTTGCCAAAT GTGTTTACATACAATTGTGTTATAAAGCGGCTTTGTAAGAATGAAAAAGTGGAAGAAGCTTATGAATTGTTGGATGAAAT GATTTCAAGAGGAGTAAAACCAGACACTTGGAGTTATAATGCAATACAAACTTACCATTGTGATCATTGTGAGGTCAATA GGGCTCTAAGGTTAATGTCTAGAATGGAAAAGGATAATTGTTTTCCTGATCATCATACATATAACATGGTGCTCAAATTG CTGATTAGGATAGGAAGGTTTGATAAGGCAACTGAAGTTTGGGAGGACATGGGGCATAAAAATATTTATCCATCTGTCTC AACATATTCTGTCATGATTCATGGTTTTTGTAAAAAGAAGGGAAAGGTAGAGGAGGCATGTAAGTACTTTGAGATGATGA TTGATGAAGGAATACCACCTTATGTTACTACGGTTGAAATGCTGCGGAATCGCCTCTTGCGTTTTGGCCTTTTGGATCGC ATTGAAATACTTGCTGATAAGATGAGGCAGGGAACTTCATGTTCAATCCATGAATTGGCAAATATTATGAGTGGTGTTAC AGTTGCTCATAATGCTTTAAGGCATGATGAGATGGACTCCGAAAGTGACTGA
CDS sequence (LotjaGi5g1v0241900.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTATGCAGTCACTCTTCTCTAAATATAAAGTATTAACCTCTTCCTGTTGCCCTCTTGTCCAACACAAGCACTACTG CTATCCCTTTCACTCTTTCCCAGCCCCACAAGTGTCCGGCCTGTTATTACCGGACCTTGTGAATGAGATATCTCGTGTAG TCAGTGATCACCGGTTCCCTCACCATGATCTAGAACTCTCTCTCAATCCATTTTCAGCACAAATGTCCACCGATTTAGTT GAACAGGTTTTGAAAAGGTGCAATAAGCTTGGCTTCTCAGCCCACAGATTCTTTCTTTGGGCTAAATCAATTCCAGGTTT CCAGCATAGTGCTGAGAGCTTCAGCATTTTGGTAGAAATCTTAGGAAGTTGTAAACAATTTGCTATACTCTGGGATTTTC TTGTAGAAATGAGAGAGTCTTCTTGTTGTGAAATCAAGAATGATATCTTCTGGCTCATTTTCAAGGCATATAGCCGGGCT AATTTACCGGATGGCGCAATCCGGTCTTTCATTAGAATGGATGAATTTGGAATTAACCCAACTATTCATGATTTTGAGAA GCTTTTGTACTTTTTATGTAAAAGGAAGCATGTCAAACAGGCTCAGAATTTTTTTGATCAAGCTAAGAGTCGTTTCATGT TAACTGCTAAGACTTACAGCATTTTGATAAGTGGATGGGGTGAGATTGGTGATTCAGGGAAGGCACATGAGCTGTTTCAA TCAATGCTTGAGCAAGGATGTCCTGTGGATTTGCTTGCATATAATAGAATTTTAGACGCCCTCTGCAAAGGAGGTCGTGT GGATGAAGCTACAAATATTTTTCATGATATGCTGTCAAAAGGAGTTGAACCAGATGCTTTTACTTACTCAATATTCATTC ACGCGTATTGTGATGCAAATGATATACATTCAGCTTTCAGGGTTCTTGATAAAATGAGAAGATGTAGACTTTTGCCAAAT GTGTTTACATACAATTGTGTTATAAAGCGGCTTTGTAAGAATGAAAAAGTGGAAGAAGCTTATGAATTGTTGGATGAAAT GATTTCAAGAGGAGTAAAACCAGACACTTGGAGTTATAATGCAATACAAACTTACCATTGTGATCATTGTGAGGTCAATA GGGCTCTAAGGTTAATGTCTAGAATGGAAAAGGATAATTGTTTTCCTGATCATCATACATATAACATGGTGCTCAAATTG CTGATTAGGATAGGAAGGTTTGATAAGGCAACTGAAGTTTGGGAGGACATGGGGCATAAAAATATTTATCCATCTGTCTC AACATATTCTGTCATGATTCATGGTTTTTGTAAAAAGAAGGGAAAGGTAGAGGAGGCATGTAAGTACTTTGAGATGATGA TTGATGAAGGAATACCACCTTATGTTACTACGGTTGAAATGCTGCGGAATCGCCTCTTGCGTTTTGGCCTTTTGGATCGC ATTGAAATACTTGCTGATAAGATGAGGCAGGGAACTTCATGTTCAATCCATGAATTGGCAAATATTATGAGTGGTGTTAC AGTTGCTCATAATGCTTTAAGGCATGATGAGATGGACTCCGAAAGTGACTGA
Protein sequence (LotjaGi5g1v0241900.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAMQSLFSKYKVLTSSCCPLVQHKHYCYPFHSFPAPQVSGLLLPDLVNEISRVVSDHRFPHHDLELSLNPFSAQMSTDLV EQVLKRCNKLGFSAHRFFLWAKSIPGFQHSAESFSILVEILGSCKQFAILWDFLVEMRESSCCEIKNDIFWLIFKAYSRA NLPDGAIRSFIRMDEFGINPTIHDFEKLLYFLCKRKHVKQAQNFFDQAKSRFMLTAKTYSILISGWGEIGDSGKAHELFQ SMLEQGCPVDLLAYNRILDALCKGGRVDEATNIFHDMLSKGVEPDAFTYSIFIHAYCDANDIHSAFRVLDKMRRCRLLPN VFTYNCVIKRLCKNEKVEEAYELLDEMISRGVKPDTWSYNAIQTYHCDHCEVNRALRLMSRMEKDNCFPDHHTYNMVLKL LIRIGRFDKATEVWEDMGHKNIYPSVSTYSVMIHGFCKKKGKVEEACKYFEMMIDEGIPPYVTTVEMLRNRLLRFGLLDR IEILADKMRQGTSCSIHELANIMSGVTVAHNALRHDEMDSESD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 65 | 196 | 132 | 3.2E-10 | ||
| PANTHER | 94 | 349 | 256 | 1.4E-75 | – | |
| ProSiteProfiles | 110 | 144 | 35 | 6.511 | ||
| ProSiteProfiles | 146 | 180 | 35 | 7.706 | ||
| Pfam | 154 | 178 | 25 | 1.2 | ||
| ProSiteProfiles | 181 | 211 | 31 | 5.831 | ||
| SUPERFAMILY | 191 | 452 | 262 | 8.72E-6 | ||
| Gene3D | 207 | 278 | 72 | 1.9E-14 | ||
| ProSiteProfiles | 215 | 249 | 35 | 10.49 | ||
| TIGRFAM | 218 | 250 | 33 | 3.0E-7 | ||
| Pfam | 218 | 247 | 30 | 1.5E-4 | ||
| ProSiteProfiles | 250 | 284 | 35 | 13.439 | ||
| Pfam | 251 | 298 | 48 | 4.2E-16 | ||
| TIGRFAM | 253 | 286 | 34 | 2.4E-9 | ||
| Gene3D | 279 | 349 | 71 | 4.4E-21 | ||
| ProSiteProfiles | 285 | 319 | 35 | 11.586 | ||
| TIGRFAM | 287 | 321 | 35 | 1.1E-7 | ||
| Pfam | 319 | 361 | 43 | 9.2E-16 | ||
| ProSiteProfiles | 320 | 354 | 35 | 14.074 | ||
| TIGRFAM | 322 | 356 | 35 | 2.0E-11 | ||
| PANTHER | 345 | 495 | 151 | 1.4E-75 | – | |
| Gene3D | 350 | 419 | 70 | 7.2E-15 | ||
| ProSiteProfiles | 355 | 389 | 35 | 9.054 | ||
| Pfam | 389 | 438 | 50 | 3.2E-15 | ||
| ProSiteProfiles | 390 | 424 | 35 | 11.4 | ||
| TIGRFAM | 392 | 425 | 34 | 1.2E-6 | ||
| Gene3D | 420 | 492 | 73 | 3.6E-13 | ||
| ProSiteProfiles | 425 | 460 | 36 | 13.285 | ||
| TIGRFAM | 428 | 460 | 33 | 1.5E-6 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi5g1v0241900.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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