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LotjaGi5g1v0242600.5

Overview

Field Value
Gene ID LotjaGi5g1v0242600
Transcript ID LotjaGi5g1v0242600.5
Related isoforms 4
Lotus japonicus genome version Gifu v1.2
Description ATP-dependent RNA helicase, putative; TAIR: AT3G62310.1 RNA helicase family protein; Swiss-Prot: sp|Q9LZQ9|DEAH2_ARATH Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH2; TrEMBL-Plants: tr|I1JQU1|I1JQU1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0242600
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr5:55119407..55122471) extracted from Lotus japonicus Gifu genome v1.2.

GACATTCTCGAGAAACGGAAAACCCTCCCCGTCTGGCTCCAGAAGGAAGAGTTCTTCAAGGCTTTGCGCGAAAACCAGAC TCTCATTCTCGTTGGTGAAACTGGTAGTGGTAAAACCACACAGGTCAGTTTCTCTACTCCAAAACCCTCTCTCAAAATTG AAATTGTAGGGACTCGATGAATTCTACTTGTTTTTGTGTGTAGGTCACTGAATTTTATGGTTTTGTGTTTTTGTTATTGG TGACAGATTCCTCAGTTTGTTCTGGAAGCGGTTGATTTAGAGAGCCCTGATAGACGCGGGAAGATGATGGTTGCATGCAC TCAGCCGCGTAGAGTGGCTGCGATGTCTGTTTCCCGCCGTGTGGCTGAAGAGATGGATGTCACTATTGGAGAAGAGGTTG GTTATAGCATCAGATTTGAGGATTGCAGTAGTTCCAAGACGGTTTTGAAGTATGTTTTGTTTTTCTGTTAAATTACTACT TTCTTTAGTTAATTGAATTTAGAGTTTCGTGCAGTATTTTGGCCCCGTTTGGAAGAGCTTATTTGAACTTATCTGATAGC TTAAGCTCTTATGTAAGTGTATGGCAGAGCTTATGCAAACAGGCGCCATAAGCTGTTTTGAGCTTATTTTCATAAGCTAC TCAAGATAGCTTATGAAAAAGAGCTTATGCTTATATATAGCTTATTTTCAATTTATTTCAATAAAAATTTTAAAATAGCT TATGAATAAGCACTTATGACCATAAGTGCTTAATTAAGCTGTTTTCCCAAACGGGGCCTTTATATAATGTTTTCCCCCCC TATGGGTCTCAATTGGGATGCGTTTTCTTTGCTCCCTGCCACAGGTATCTTACAGATGGTATGCTTTTGAGAGAAGCAAT GGCGGATCCGCTTTTGGACCGATACAAAGTAATTATTCTTGACGAGGCGCATGAAAGGACTTTGGCCACGGATGTGCTGT TTGGTCTTCTTAAGGAAGTACTTAAAAATAGACGTGACCTGAAGTTGGTTGTTATGAGTGCAACACTTGAAGCTGAAAAG TTTCAGGGCTATTTTTCCGGGGCGCCTCTTATGAAAGTGCCTGGAAGGCTACATCCGGTGGAAATTTTCTACACTCAGGA GCCAGAAAGAGATTACTTGGAGGCGGCTATTAGGACAGTTGTACAGATACACTTGTGTGAGCCTCCTGGAGATATACTTG TTTTCCTTACTGGGGAGGAAGAGATAGAAGATGCATGCCGCAAAATAAATAAAGAAGTTTCAAATTTGGGAGACCAGGTG GGACCTTTGAAAGTGGTACCCTTGTACTCTACACTTCCTCCAGCTATGCAGCAGAAGATTTTTGAAGCAGCTCCACCTCC AGTTAAAGAGGGAGGGCCTCCTGGAAGGAAGATTGTGGTATCAACTAACATTGCAGAAACTTCCTTGACAATTGATGGTA TAGTCTATGTTATTGACCCTGGGTTTGCTAAGCAGAAGGTTTATAACCCTCGAGTTCGGGTCGAGTCTTTGTTGGTGTCT CCAATATCAAAGGCTAGTGCACACCAGAGATCTGGGCGTGCTGGAAGAACTCAGCCAGGGAAATGTTTTAGACTTTACAC TGAAAGAAGTTTCAATAATGATCTTCAGCCGCAAACCTATCCTGAAATTTTGAGATCTAATCTTGCGAACACAGTTCTTA CCTTAAAGAAACTTGGTATAGATGATTTAGTGCATTTTGATTTCATGGACCCTCCTGCCCCCGAGACCTTAATGCGCGCT TTGGAAGTATTGAATTACTTGGGTGCACTTGATGATGAGGGTAACTTAACAAAGCTGGGTGAGATTATGAGTGAATTTCC ATTGGATCCTCAGATGTCAAAGATGCTTGTTGTTAGTCCTGAGTTCAACTGTTCAAATGAGATTCTTTCAATTTCAGCCA TGCTATCAGGTATGATTCTATTTTTAATTGCTTTTTTTGTGTCTGTCCTGAGTCTCACCCTAATGTTAAGGGAATGTTGT TGTGTTGGGCTCCACTTTGATATGGATGCCCAGCATTTTTACATGTGCACAGTCTATATTGTGCATACGAGGGGATGTTT GACTGCTTACATGTGTGCTAAGTTGCACATGAATGCGGTTCATTGAGTATGTCCTGTTAGTTAGTCATCAGCAACTGTCT TCTCTGGGTTTCATGCCCCCGGTTGGCATGTACCATAGGATTCTAAGTAAGTGCTGATGCAGATAGTTGCAGTTTCTCAG TATTCTCTCATGAAGAAATTGGTGTCGTCTCGCCTCTATGCATCTGCTGACCTTCCGTGGACCTCCTCTGTGATAAATAA TTTCTTTCTCTAGTACCCAATTGCTTTATTCGGCCTAGGGAGGCACAAAAAGCTGCGGATGAAGCAAAAGCTAGGTTTGG GCACATTGATGGAGATCATCTCACACTCTTGAATGTTTACCATGCCTACAAGCAAAACAGTGAGTGCTCATTTCTGCTAC TTTGTTTATTCCCCAATTTGTTGCTATTTATTTTTGTCTAATGTCAAGTTCGTTAATTGTACGTGAATGGTTTTTCAGAT GAGGATCCATCTTGGTGCTATGATAACTTTGTTAACAATAGGGCGCTGAAATCAGCTGATAATGTCAGACAACAGCTAGT GCGTATCATGACTCGGTATAACCTGAAGCTATGCAGCAGTGACTTCAATAGCCGTGACTACTATGTCAACATAAGAAAGG CAATGCTAGCAGGATATTTCATGCAGGTGGCCCATCTTGAGCGGACAGGACACTACTTGACAGTGAAAGACAACCAGGTT TGTTGAGATGCACTGCAATTTGTGCTTATCTTCCTTCCTTTTCCATTTTGTACTACAAAAATAGCTATTGTGTAGGCTGA AGGATTGCATTTATATTAATTATTATATTCTGGTGTAGGTGGTGCACTTGCATCCTTCAAATTGCCTGGACCACAAGCCC GAGTGGGTAATCTATAATGAATATGTCCTTACCAGTCGGAACTTCATTCGTACTGTGACAGACATACGCGGTGAATGGTA AGATTTTATTCATTTAGTATTTTGA
Download Genomic Sequence

CDS sequence (LotjaGi5g1v0242600.5) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGATGGTTGCATGCACTCAGCCGCGTAGAGTGGCTGCGATGTCTGTTTCCCGCCGTGTGGCTGAAGAGATGGATGTCAC TATTGGAGAAGAGGTTGGTTATAGCATCAGATTTGAGGATTGCAGTAGTTCCAAGACGGTTTTGAAGTATCTTACAGATG GTATGCTTTTGAGAGAAGCAATGGCGGATCCGCTTTTGGACCGATACAAAGTAATTATTCTTGACGAGGCGCATGAAAGG ACTTTGGCCACGGATGTGCTGTTTGGTCTTCTTAAGGAAGTACTTAAAAATAGACGTGACCTGAAGTTGGTTGTTATGAG TGCAACACTTGAAGCTGAAAAGTTTCAGGGCTATTTTTCCGGGGCGCCTCTTATGAAAGTGCCTGGAAGGCTACATCCGG TGGAAATTTTCTACACTCAGGAGCCAGAAAGAGATTACTTGGAGGCGGCTATTAGGACAGTTGTACAGATACACTTGTGT GAGCCTCCTGGAGATATACTTGTTTTCCTTACTGGGGAGGAAGAGATAGAAGATGCATGCCGCAAAATAAATAAAGAAGT TTCAAATTTGGGAGACCAGGTGGGACCTTTGAAAGTGGTACCCTTGTACTCTACACTTCCTCCAGCTATGCAGCAGAAGA TTTTTGAAGCAGCTCCACCTCCAGTTAAAGAGGGAGGGCCTCCTGGAAGGAAGATTGTGGTATCAACTAACATTGCAGAA ACTTCCTTGACAATTGATGGTATAGTCTATGTTATTGACCCTGGGTTTGCTAAGCAGAAGGTTTATAACCCTCGAGTTCG GGTCGAGTCTTTGTTGGTGTCTCCAATATCAAAGGCTAGTGCACACCAGAGATCTGGGCGTGCTGGAAGAACTCAGCCAG GGAAATGTTTTAGACTTTACACTGAAAGAAGTTTCAATAATGATCTTCAGCCGCAAACCTATCCTGAAATTTTGAGATCT AATCTTGCGAACACAGTTCTTACCTTAAAGAAACTTGGTATAGATGATTTAGTGCATTTTGATTTCATGGACCCTCCTGC CCCCGAGACCTTAATGCGCGCTTTGGAAGTATTGAATTACTTGGGTGCACTTGATGATGAGGGTAACTTAACAAAGCTGG GTGAGATTATGAGTGAATTTCCATTGGATCCTCAGATGTCAAAGATGCTTGTTGTTAGTCCTGAGTTCAACTGTTCAAAT GAGATTCTTTCAATTTCAGCCATGCTATCAGTACCCAATTGCTTTATTCGGCCTAGGGAGGCACAAAAAGCTGCGGATGA AGCAAAAGCTAGGTTTGGGCACATTGATGGAGATCATCTCACACTCTTGAATGTTTACCATGCCTACAAGCAAAACAATG AGGATCCATCTTGGTGCTATGATAACTTTGTTAACAATAGGGCGCTGAAATCAGCTGATAATGTCAGACAACAGCTAGTG CGTATCATGACTCGGTATAACCTGAAGCTATGCAGCAGTGACTTCAATAGCCGTGACTACTATGTCAACATAAGAAAGGC AATGCTAGCAGGATATTTCATGCAGGTGGCCCATCTTGAGCGGACAGGACACTACTTGACAGTGAAAGACAACCAGGTGG TGCACTTGCATCCTTCAAATTGCCTGGACCACAAGCCCGAGTGGGTAATCTATAATGAATATGTCCTTACCAGTCGGAAC TTCATTCGTACTGTGACAGACATACGCGGTGAATGGTAA
Download CDS Sequence

Protein sequence (LotjaGi5g1v0242600.5) extracted from Lotus japonicus Gifu v1.2 Proteins.

MMVACTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDCSSSKTVLKYLTDGMLLREAMADPLLDRYKVIILDEAHER TLATDVLFGLLKEVLKNRRDLKLVVMSATLEAEKFQGYFSGAPLMKVPGRLHPVEIFYTQEPERDYLEAAIRTVVQIHLC EPPGDILVFLTGEEEIEDACRKINKEVSNLGDQVGPLKVVPLYSTLPPAMQQKIFEAAPPPVKEGGPPGRKIVVSTNIAE TSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTERSFNNDLQPQTYPEILRS NLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGALDDEGNLTKLGEIMSEFPLDPQMSKMLVVSPEFNCSN EILSISAMLSVPNCFIRPREAQKAADEAKARFGHIDGDHLTLLNVYHAYKQNNEDPSWCYDNFVNNRALKSADNVRQQLV RIMTRYNLKLCSSDFNSRDYYVNIRKAMLAGYFMQVAHLERTGHYLTVKDNQVVHLHPSNCLDHKPEWVIYNEYVLTSRN FIRTVTDIRGEW
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
SMART
SM00487
1 137 137 0.0082
IPR014001
Gene3D
G3DSA:3.40.50.300
1 130 130 2.8E-62 –
ProSiteProfiles
PS51192
1 128 128 16.325
IPR014001
CDD
cd17973
2 127 126 4.37112E-90 –
PANTHER
PTHR18934
2 572 571 0.0 –
PANTHER
PTHR18934:SF217
2 572 571 0.0 –
SUPERFAMILY
SSF52540
5 502 498 1.42E-119
IPR027417
Gene3D
G3DSA:3.40.50.300
131 312 182 3.3E-73 –
CDD
cd18791
132 300 169 2.60845E-87 –
ProSiteProfiles
PS51194
153 333 181 16.395
IPR001650
Pfam
PF00271
155 291 137 5.8E-11
IPR001650
SMART
SM00490
174 292 119 1.5E-17
IPR001650
Gene3D
G3DSA:1.20.120.1080
336 445 110 2.9E-35 –
SMART
SM00847
353 443 91 1.4E-35
IPR007502
Pfam
PF04408
354 442 89 4.2E-24
IPR007502
Pfam
PF07717
504 572 69 8.7E-17
IPR011709

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0004386
Molecular function Helicase activity Catalysis of the reaction: NTP + H2O = NDP + phosphate, to drive the unwinding of a DNA or RNA helix.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi5g1v0242600.5, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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