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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0243400 |
| Transcript ID | LotjaGi5g1v0243400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein; TAIR: AT1G02370.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q9FZ24|PPR4_ARATH Pentatricopeptide repeat-containing protein At1g02370, mitochondrial; TrEMBL-Plants: tr|A0A151QRR1|A0A151QRR1_CAJCA Uncharacterized protein; Found in the gene: LotjaGi5g1v0243400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:55226437..55228503) extracted from Lotus japonicus Gifu genome v1.2.
AACCTCTTCCGCAAAGGGACAGAGACACAGGCAGAGTCTGAGAACGACGGAGATGAATTACTTCCGTCAAATCTCCGGCG GAGGAAGGCTGCTCCGGCGGTTGTGCACGGCGGCCACCGGGTATGAGCGTCCGGCAGAGAAGCCAAACCTCTATCGACAG TTATCCGCGCTGGAAAAGACCGGAGGTAGTGTCTCGCAGATTCTGAACCAGTATGTAATGCAAGGCAAAGCCATCAGAAA ATCGGTGCTGGAGAATTGCATCAGGGAGCTACGCAAGTATCGCAAATTCCAACACGCACTAGAGGTATTATGAATTTTTT GATAATTTATGATCATTTTCATTTTCAATCTTTCATTTGTTTGTGTTTTGATCAATTTTATGTTTATTTTTGTTGTTTGA ATGATTGTTGTGGTAGATAATGGAATGGATGGAGATGAGGAAAGTGAATTTTTCATGGGATAATTATGCAGTGTATTTAG ATCTTGTGTGCAAAACCAAAGGGGTGGTTGCAGCTGAGAGTTTCTTTGAGGGTCTTCTTCCTTGTGCCAAGAACAAGTAC ACATATGGTGCCCTTTTGAATTGTTATTGCAAGGAGCTAATGGCAGATAAGGCATTAGCTCTTTTCGACAAGATGGATGA GTTTCGCTTTGTCACTAGTTTGGCTTTCAACAATCTCATGAGCATGTATATGAGGCTCGGTCGACCCGAGAAGGTGCCGC AGCTGGTCCATGATATGAGGCAGAGGAGAATTCCCATCAGTGCGTTCACGTACCATGTCTGGATGAATAGCTGCGCGGCT TCGAATGATCTTAACGAGGCCGAAAGGATCTATGGGGAGATGAGAAGAGTAGATGGGAATATGATCGATTGGAGAACATA TAGCAATCTTGCTGCTATATATGTAAAGGCTGAACAATTTGAGAAAGCGGAGGTGATGCTTAGAATGATGGAAGAGGAGA TAAAGCCGCACGAGCGTGAGGCTTACCATTGCTTACTGAGCCTTTATGCGGGGACCCGTAATCGTGGAGAGGTTTATAGA GTGTGGGATCACCTGAAGTCATTTTCCCCGGTGATCAACACGAGCTATCTTGTTATGCTTTCTACCCTTAGAAGGCTTAA TGATATCGAGGGTATAACAAAATGTCTTGAGGAGTGGGAATCTCAGTGTGTTACTTATGATATAAGGATGGTTAGTGTTG CAGTAAATGCTTACTTGAGACATGACATGGATGAAGAAGCTGAATCTGTTTTAAAGAGGGCTACGATGAGGTGCAAAGGA CCTTTCTTTAAGATTCGAGAAATGTTCATGATGTTTTACTTGAAGAAAGATCAATTGGATGGTGCATTGAGCCACTTACA GGCGGCGCATTCAGAAGCTACCATATGGCGTCCTTCACCAGAAGTTGTAGGTGCTTTTCTAAAATATTATGATGAAAAAA CGGATCTTGATGGTGTTGATGAGTTGTGCAAGATTCTCGATACTAATGATGATGATTCCTGTCTTAAAACTTGTGATGCT GCATCCGAGTCGTCTCCTGAAATTGATCCAATATTGAAGGAAGATTCTTATGTCAACCATGCACAAGGGAACTTGTGAGC AGATGTTTACTATCAGTAGGCATGTCTATGTGAAGGATGTGATTTGACAATTGACTTGTTTTCTCCATAATCTATTGGAA TTGAATAGTTTAATGAAACAACATTTGCCTACGCATTTTGTTTACTTGATGTTTTCATGAGGATATCAAAGGGCAAAAAC TCTAGTGGGGTTTGTTGTATGAACCCGCTGTAAGACTCAATTAGTGACGAAATCTATTTATTATGCAATACTTTGTATCA TTTTATACTATTTTATGCATTTTTGAAAACTTGTACTCTTCAATGTAACAAATTCTGCAAATATTTATACTGACCAATTC AGGAAATGGAGGCAGATATTTATCACATTTTTCGTGCTTCATCATATTGAAAGAGAGGCATTTCACTAAAGAAAGGGTTC CCTTGAGCAGATTTTTCTTTTGAAGGTGATACATGATGTGAGGATAAACTTTTTTTTATACACTATT
CDS sequence (LotjaGi5g1v0243400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAATTACTTCCGTCAAATCTCCGGCGGAGGAAGGCTGCTCCGGCGGTTGTGCACGGCGGCCACCGGGTATGAGCGTCC GGCAGAGAAGCCAAACCTCTATCGACAGTTATCCGCGCTGGAAAAGACCGGAGGTAGTGTCTCGCAGATTCTGAACCAGT ATGTAATGCAAGGCAAAGCCATCAGAAAATCGGTGCTGGAGAATTGCATCAGGGAGCTACGCAAGTATCGCAAATTCCAA CACGCACTAGAGATAATGGAATGGATGGAGATGAGGAAAGTGAATTTTTCATGGGATAATTATGCAGTGTATTTAGATCT TGTGTGCAAAACCAAAGGGGTGGTTGCAGCTGAGAGTTTCTTTGAGGGTCTTCTTCCTTGTGCCAAGAACAAGTACACAT ATGGTGCCCTTTTGAATTGTTATTGCAAGGAGCTAATGGCAGATAAGGCATTAGCTCTTTTCGACAAGATGGATGAGTTT CGCTTTGTCACTAGTTTGGCTTTCAACAATCTCATGAGCATGTATATGAGGCTCGGTCGACCCGAGAAGGTGCCGCAGCT GGTCCATGATATGAGGCAGAGGAGAATTCCCATCAGTGCGTTCACGTACCATGTCTGGATGAATAGCTGCGCGGCTTCGA ATGATCTTAACGAGGCCGAAAGGATCTATGGGGAGATGAGAAGAGTAGATGGGAATATGATCGATTGGAGAACATATAGC AATCTTGCTGCTATATATGTAAAGGCTGAACAATTTGAGAAAGCGGAGGTGATGCTTAGAATGATGGAAGAGGAGATAAA GCCGCACGAGCGTGAGGCTTACCATTGCTTACTGAGCCTTTATGCGGGGACCCGTAATCGTGGAGAGGTTTATAGAGTGT GGGATCACCTGAAGTCATTTTCCCCGGTGATCAACACGAGCTATCTTGTTATGCTTTCTACCCTTAGAAGGCTTAATGAT ATCGAGGGTATAACAAAATGTCTTGAGGAGTGGGAATCTCAGTGTGTTACTTATGATATAAGGATGGTTAGTGTTGCAGT AAATGCTTACTTGAGACATGACATGGATGAAGAAGCTGAATCTGTTTTAAAGAGGGCTACGATGAGGTGCAAAGGACCTT TCTTTAAGATTCGAGAAATGTTCATGATGTTTTACTTGAAGAAAGATCAATTGGATGGTGCATTGAGCCACTTACAGGCG GCGCATTCAGAAGCTACCATATGGCGTCCTTCACCAGAAGTTGTAGGTGCTTTTCTAAAATATTATGATGAAAAAACGGA TCTTGATGGTGTTGATGAGTTGTGCAAGATTCTCGATACTAATGATGATGATTCCTGTCTTAAAACTTGTGATGCTGCAT CCGAGTCGTCTCCTGAAATTGATCCAATATTGAAGGAAGATTCTTATGTCAACCATGCACAAGGGAACTTGTGA
Protein sequence (LotjaGi5g1v0243400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNYFRQISGGGRLLRRLCTAATGYERPAEKPNLYRQLSALEKTGGSVSQILNQYVMQGKAIRKSVLENCIRELRKYRKFQ HALEIMEWMEMRKVNFSWDNYAVYLDLVCKTKGVVAAESFFEGLLPCAKNKYTYGALLNCYCKELMADKALALFDKMDEF RFVTSLAFNNLMSMYMRLGRPEKVPQLVHDMRQRRIPISAFTYHVWMNSCAASNDLNEAERIYGEMRRVDGNMIDWRTYS NLAAIYVKAEQFEKAEVMLRMMEEEIKPHEREAYHCLLSLYAGTRNRGEVYRVWDHLKSFSPVINTSYLVMLSTLRRLND IEGITKCLEEWESQCVTYDIRMVSVAVNAYLRHDMDEEAESVLKRATMRCKGPFFKIREMFMMFYLKKDQLDGALSHLQA AHSEATIWRPSPEVVGAFLKYYDEKTDLDGVDELCKILDTNDDDSCLKTCDAASESSPEIDPILKEDSYVNHAQGNL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 4 | 474 | 471 | 4.0E-186 | – | |
| PANTHER | 4 | 474 | 471 | 4.0E-186 | – | |
| Gene3D | 49 | 196 | 148 | 4.8E-17 | ||
| ProSiteProfiles | 130 | 164 | 35 | 10.369 | ||
| Pfam | 132 | 160 | 29 | 1.9E-6 | ||
| TIGRFAM | 132 | 163 | 32 | 1.5E-6 | ||
| ProSiteProfiles | 165 | 198 | 34 | 6.73 | ||
| Pfam | 166 | 211 | 46 | 1.2E-7 | ||
| TIGRFAM | 167 | 198 | 32 | 1.6E-4 | ||
| Gene3D | 197 | 268 | 72 | 5.8E-7 | ||
| SUPERFAMILY | 199 | 402 | 204 | 2.95E-8 | ||
| ProSiteProfiles | 199 | 233 | 35 | 8.55 | ||
| TIGRFAM | 201 | 228 | 28 | 1.3E-4 | ||
| ProSiteProfiles | 235 | 265 | 31 | 7.596 | ||
| Pfam | 238 | 264 | 27 | 0.031 | ||
| Gene3D | 269 | 440 | 172 | 1.7E-7 | ||
| ProSiteProfiles | 270 | 304 | 35 | 5.623 | ||
| ProSiteProfiles | 339 | 373 | 35 | 6.062 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi5g1v0243400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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