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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0245700 |
| Transcript ID | LotjaGi5g1v0245700.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RING/FYVE/PHD zinc finger superfamily protein; TAIR: AT1G02610.1 RING/FYVE/PHD zinc finger superfamily protein; Swiss-Prot: sp|F4JKK0|SUD1_ARATH Probable E3 ubiquitin ligase SUD1; TrEMBL-Plants: tr|I3T2U2|I3T2U2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0245700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:55392714..55395405) extracted from Lotus japonicus Gifu genome v1.2.
GCAGATTCTAGAGAGAGGTGAACAGAGAGAAACAGAGTACGAGACAGAATTTGAAAACCAAGGCTGAAGTTTTGAGAAGA AACACAGAGCTCTCTATGGTTGTGAGAAACATGGAAGAAGTGGTATTGCTGATTGATGATCTGAGATCACTTTCTGGAAT TTCTCGCTGTAGAATTTGTCATGAAGAAGAATTTGAAAGCTCCAAACAATTGGAAGCTCCCTGTGCTTGTTCTGGCACTG TTAAGGTAATAAACCCAGAAATTCTATACCTATTGTGGTTTTTGCATCTTCCATTGCTGATACCTGTGTTTTTCTGTGCA GTTTGCTCACAGAGATTGCATCCAGACATGGTGCAACGAGAAAGGAAACACAACTTGTGAAATATGTTTACAGGTACGAG GATTGTGTTTCTTGTTTCAATGTTTGCTCTGCACAAAAAAATTCTTCATTTTTTTAGAACTTTCAACGGCTATGATCTTC TCATTTTTCAAACGTAAAATGGGGGTTTAGCTCAGCTTTTCCTCTCCTATGAAAATTTCTTTGCAACATTTTCCTTCTAT TGTTTTTGGGGATTGCTGTGCTTTTTTATTTATTTATGATTATATATTTATATTTGATGGGTACAAAATGATTCATTTTA ATTTGTTTTCCTTGATTTTGCAGCAATATGAACCTGGATACACTGCACCTCCAAAGAAATCTCCAATTTCTGATGCAGCA ATGACTATTAGGTACTTTCCCCCATTAATTTTTCTGCATAGTTGAATTATATCACATGCTTATGTTAAATGCTACGCAAT TTTAAATTTTAATTTTCATGGTTGCAACATGTTGCAAAGTCACTCAACATTCTCCGTGCAATTCAATCAAAGTGAACTCA TGTGCCTTGCGACTAAATATTTTGCATTAACCATTTCACAATTTAATCAAATTTGTTAACTTTTAATTTACATTTTTAAA TTATTTTCAGAAAATTTGACATGTACTAATTTGTTGTTACAGAGATAGCCTGCAAATTCCAAGGGAGCAAGAACAAATAA ACACGAGAATAGTTGTGGGAATAGTTGAAGGAGTAAGAATACAAAACAATTACTCTGAATGCTCTTATGCTGCAGATAGA AGCGCATCTTGCTGTCGATCACTGGCTTTAGCTGTAAGAACATTTTGTATTTACTATTTTACATTCTTATGTCCTTCTGT AGAGTGTGAGAGGTAAATCTTAATTAGTTAATACATACATTTTTATTTTATTTTAATAGTTCCTATTTTTATAGTACTCG TTAGCATTATGTTGCATTACAATTAAGGATTAAAGAATGAGTCAAAGCCTGCAAAGCGGATTGCAATTATTGCCAACCAG TTCGGCCATTGTGGTCAATTGGGTGCTAATGCCAACTATATTGCATTGACCTTGAACATATTTCCTCTTTAAGGAAACAG AGAGTTTTGTTGACCCTTTGGAGTGTTTTCTTGTAATTTAAAATTAAGAATAGGCAAGCTAGACTTCGTAAGAGTTAGGA CACAAGTACAATATTCGAAAAATCATGTGCTGGGAGAGATTATCTCAGTTTCCCGAACAAGATTACCTGTCTTAGACAAG AAAAAAATAAGAACGAAGAGTTTTATTCTCTTTATGAGCCATATTTTTACCTATGGTTGTGGTGGAGTTGCATATGTTAA ACTTGAAATGAACTTAAGCAAACATAAAAATAGTTGAATTCAAAATGACATGTTATAATGTTGATATATCTAAGGACTAA AAAGAACTTGTTGCTTCATATTTTTGCAGTTTACACTGATCTTGCTTGTGAGACATCTTTTCGCTTTGCTTACAAATGGA ATGGAAGATTATCCATTTACAATTCTTACAGTAAGTACTTGGATTCAAGTTTTCAACTAAAAAAAGAAGAGAAAATTACA ATATCTGCTTCATGAATCATTGATCTAACTTTTGGTATTTTTTTTTGTTTGTGTAGGTCTTTATGCTAAGGGCCAGTGGA ATTATTATACCCATGTACATAATTATTAAGACAATTGGAGGCATTCATGACAGTGTTCGGCGCCACTATCAGGTTTCAAA CTTTTTTCCATTTATTTAGTATTTGATTCTTTTTTGTCTGGGAGAGAGTGATTGTCCAATTGTACTGATTTGTGAGCTTG ACGTGCAACCACAACTAATGAATCATTGTTCCTCTGCATATCAGGATTCTGACGATGACACATCGATTTCTGATGAAGGT GATGAAGAAAATGAGGGACCGCATGGTGCAATTTTATTAAGACATTTATAGTCACACCTTGTGTTATAATTTGCTTTAAT TTAATTTGTGTAAGAGCATTGTGCTGATGCTCTCTGTGTCAAAATTCCAACATTTTGAAGGGGTAAATTTATTGCAAAAA GAATGGAATTCAAATTGAAATATTGCACATATTCCCTTGCGGTGGTTATTTGTACGTACCTTCCTTTCAAAAAAAAGTTA TCTATGCCTTGTCTCCTATCTACCACACACCAAACAAAGTAGATAGAACAACCTTCAGCTACATGCATTCACTTGTAAAA CAGGCTTTAATTTGGTAGTTGAAATCAAATCACAACTTTCTCAACGACTAATACATAGAGAAAGCTCAGTCCAATTAGGA TTGAAATTAACCTTCATGGCTTTAAAATAATTACTAAAGTGTGTATTGGGAT
CDS sequence (LotjaGi5g1v0245700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTTGTGAGAAACATGGAAGAAGTGGTATTGCTGATTGATGATCTGAGATCACTTTCTGGAATTTCTCGCTGTAGAAT TTGTCATGAAGAAGAATTTGAAAGCTCCAAACAATTGGAAGCTCCCTGTGCTTGTTCTGGCACTGTTAAGTTTGCTCACA GAGATTGCATCCAGACATGGTGCAACGAGAAAGGAAACACAACTTGTGAAATATGTTTACAGCAATATGAACCTGGATAC ACTGCACCTCCAAAGAAATCTCCAATTTCTGATGCAGCAATGACTATTAGAGATAGCCTGCAAATTCCAAGGGAGCAAGA ACAAATAAACACGAGAATAGTTGTGGGAATAGTTGAAGGAGTAAGAATACAAAACAATTACTCTGAATGCTCTTATGCTG CAGATAGAAGCGCATCTTGCTGTCGATCACTGGCTTTAGCTTTTACACTGATCTTGCTTGTGAGACATCTTTTCGCTTTG CTTACAAATGGAATGGAAGATTATCCATTTACAATTCTTACAGTCTTTATGCTAAGGGCCAGTGGAATTATTATACCCAT GTACATAATTATTAAGACAATTGGAGGCATTCATGACAGTGTTCGGCGCCACTATCAGGATTCTGACGATGACACATCGA TTTCTGATGAAGGTGATGAAGAAAATGAGGGACCGCATGGTGCAATTTTATTAAGACATTTATAG
Protein sequence (LotjaGi5g1v0245700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVVRNMEEVVLLIDDLRSLSGISRCRICHEEEFESSKQLEAPCACSGTVKFAHRDCIQTWCNEKGNTTCEICLQQYEPGY TAPPKKSPISDAAMTIRDSLQIPREQEQINTRIVVGIVEGVRIQNNYSECSYAADRSASCCRSLALAFTLILLVRHLFAL LTNGMEDYPFTILTVFMLRASGIIIPMYIIIKTIGGIHDSVRRHYQDSDDDTSISDEGDEENEGPHGAILLRHL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 143 | 143 | - | – | |
| PANTHER | 4 | 233 | 230 | 2.0E-129 | ||
| PANTHER | 4 | 233 | 230 | 2.0E-129 | – | |
| Gene3D | 16 | 83 | 68 | 3.1E-19 | ||
| ProSiteProfiles | 17 | 79 | 63 | 22.052 | ||
| SUPERFAMILY | 24 | 77 | 54 | 6.06E-15 | – | |
| SMART | 24 | 73 | 50 | 3.0E-20 | ||
| CDD | 25 | 72 | 48 | 8.17672E-18 | – | |
| Pfam | 25 | 72 | 48 | 4.8E-14 | ||
| Pfam | 78 | 194 | 117 | 4.9E-37 | ||
| TMHMM | 143 | 165 | 23 | - | – | |
| Phobius | 144 | 162 | 19 | - | – | |
| Phobius | 163 | 167 | 5 | - | – | |
| Phobius | 168 | 191 | 24 | - | – | |
| TMHMM | 175 | 197 | 23 | - | – | |
| Phobius | 192 | 234 | 43 | - | – | |
| MobiDBLite | 205 | 226 | 22 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of LotjaGi5g1v0245700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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