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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0246000 |
| Transcript ID | LotjaGi5g1v0246000.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Beta xylosidase; TAIR: AT1G02640.1 beta-xylosidase 2; Swiss-Prot: sp|P83344|XYNB_PRUPE Putative beta-D-xylosidase; TrEMBL-Plants: tr|A0A0R0HT51|A0A0R0HT51_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0246000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:55417478..55421386) extracted from Lotus japonicus Gifu genome v1.2.
AAACCACCAAAGCCTACATTCATCTACATTCATAGTACTCCTTTTTCTTCTCTTTCCCAAATGGATTCCATGTCCTTACC CCTCATCGCCATTCTCTTTCTCCTCCTCATTTCCGGCAGCCAGGCACGTGAGCCTTTCGCCTGTGATCCGAAGAACACAA CCACGACGAACTTGCCATTTTGCCGGGCATCGCTGGTAACAGGAGCCAGGGTTAATGACATAATTGGAAGGTTGACACTA CAAGAGAAGGTTAACTTGCTGGTGAACAATGCCGCGGCGGTTCCTAGGCTTGGAATCAAAGGCTATGAGTGGTGGTCGGA GGCACTACACGGTGTTTCAAATGTGGGTCCAGGAACCAAGTTTGGTGGCCAATTCCCTGCTGCAACTAGCTTCCCTCAAG TCATCACCACTGCTGCTTCATTCAATGCTTCATTGTGGGAAGCAATCGGACAGGTGAGCTTTAATCTCTGTTATTCTGTA CCTTATTTGGTCACGTTATATGTTGTAGTTGGTATAGTTTTGGAGCTTTGCTTCTGTTTTCTACTTTTCTAAGTTAGATG GAATAGTTAGTACTTAATTAATACTAACAAAAGTAGTCTAGCAGATCATTTTTTTTCTTACAGTCTAGCAGATCATTGTC ATCAAACTTTAAAAATATTAATTTAACTAATAACACAAATATTAATTTAACGAATAACAATAATATATCTACAAACTTTA AAAATACACCAATCTATAGCCAAATGTTTGATTTTAGGATGGATACTTTGATATATATACTCAAACCAGGGGTGAGAAAA ACTAACAAACGAGGCTAATGGTAGGTTGTTTCGGATGAAGCAAGAGCAATGTACAATGGAGGTATGGGTGGGCTCACATA TTGGAGCCCAAACGTCAACATATTCAGGGATCCACGATGGGGTCGTGGACAGGAGACTCCCGGTGAGGACCCAATTCTAG CCGGGAAGTATGCAGCTAGTTATGTAAGAGGACTACAGGGAACAAACCGTAGTCGGTTGAAGGTGGCTGCTTCTTGCAAG CACTTCACAGCTTATGATCTTGATAATTGGAACGGTGTGGATCGCTTTCACTTCAATGCAAAGGTATGTGCAAATTTTGG ATAAGAGATTATTCTTGGAAAGTTATAGTGTGTGCCATTTTTTGAGTGGTTCACCGGTAACCCAATGTTAGTAGCCGTTG AATCATAATCGTTAATTAAAAATTGTCATATCAACGACTATTAATGTTGGATCACCAGTGGACCATCCACATTATAATTT CTCATTAAATTTATAATATTATGAGTAGAAGCTTATTTTGAGCTTGATTCATAGGTGAGCAAGCAGGACATAGAAGACAC GTTCAATGTGCCATTCAGGATGTGTGTGAAGGAAGGTAATGTGGCGAGTGTGATGTGTTCTTATAATCAAGTTAATGGTG TCCCTACCTGTGCAGACGCCAACCTCCTCAAGAGAACTGTTCGTGGCCAATGGGGTCTTAATGGGTAAGATTACAGACAC AGCCAAAAGGAATTACATATCTCAAGCAAATAAAACTTACCCTTTTGCTTTGCTATGAAATATAATTCAGGTACATTGTA TCAGACTGTGACTCTGTTGGGGTGTTCTACACTAGCCAACATTACACATCAACACCAGAAGAAGCTGCTGCTGATGCCAT TAAAGCAGGCTAGTTAATTCTTAATCTAATTAATTGGCTGATTTCTTCTACATTTATGCATATTTCATTAGTAATAGGAA AATTATGGAGCCACAAAATGGCTTAACTTGATATTTGATCATGTTATTACAGGCTTGGATTTGGATTGTGGGCCTTTCTT AGGGGCCCATACACAGAATGCTGTCAAGAGAGGCCTGTTAAGTGAAGCTGATGTGAATGTTGCATTAGCAAACACATTGA CAGTTCAAATGAGGCTAGGGATGTTTGATGGCGAGCCATCAAGTCAAGCATATGGCAACCTTGGTCCAAGAGATGTGTGC ACCCAACCTCACCAAGAGCTAGCCCTTGAAGCTGCTAGACAAGGGATTGTGCTCCTAAAGAACAGTGGTCCCTCTTTGCC TCTCTCCACTCGACGCCATCGCACCCTGGCTATCATTGGGCCCAATTCTAATGCCACTGTCACAATGATAGGAAACTATG CTGGTATGTCCTTTGTACAACAAAAATCTTGTTAATGCCTACAAAATGTGACCAAGACAAACTTAATTAAGGTCTAAAAA AGTGAGGCCAAGGGTTTCCTTATGACTTTTTCTTTCCTTGCTTATTAGGTATTGGTTGTAGATACACAAGCCCTTTAGAA GGAATAGGAAAGTACGCAAAGACTATCCACGAGCTCGGGTGTGCAAATGTGGCTTGCACTGATGACAAGCAATTCGGGTC AGCTCTGAATGCAGCTCGTCAAGCAGATGCGACGGTTCTAGTGATGGGCCTGGACCAGTCCATTGAGGCTGAAACCGTGG ACCGGGCTGGCTTGCTTCTTCCCGGGCGTCAACAAGACCTTGTGTCAAAGGTAGCAGCTGCCTCTAAGGGCCCAACCATT TTGGTCTTAATGTCTGGTGGGCCTGTGGATATAACTTTTGCAAAGAATGACCCACGAATTGTGGGCATCTTGTGGGCTGG ATATCCTGGTCAAGCTGGTGGTGCTGCCATTGCAGATGTCTTATTTGGAACAACTAATCCTGGTTTGTCAATAATTCCTC TTTCTCACTTCACTCATATTTTCAGTTCTCATAAGGCCCATTGTATGCCCAATTGAGCTATATGTATAAATGCATAGATG CTTTGATTATAATTATAACATGGGTATGGACAAAAAGAATATAAAAACCTGACATGATGTTTCAATTTCAGGGGCAAGGC TACCAATGACATGGTACCCACAAGGCTACATTCAAAACTTGCCAATGACAAACATGGCAATGAGACCAAGCCGACCCACA GGGTACCCAGGAAGAACCTATCGATTCTACAAAGGTCCTGTGGTGTATCCATTTGGTTATGGATTGTCCTACACCCACTT TGTTCACACACTAGCTAGTGCACCCAAAGTGGTGTCTGTGCCTGTAGATGGCCATCGCCATGGAAATGTCTCAAACATTT CAAACAAGGCAATTAGAGTGACACATGCACGGTGTGGCAAGCTTTCTGTTAGCCTTCAAGTTGATGTTAAAAATGCTGGG TCCATAGATGGCACTCACACTTTGTTAGTGTTCACAACACCACCTAGAGGTAATGGTCATTGGGCACCGCGCAAGCAACT AGTGGCGTTTGAGAAAGTTCATATTCCTGCTAAGGCTCAGCGGAGAGTGCGAGTTAACATTCATGTTTGCAAGCTTCTGA GTGTGGTTGATAGGTCTGGTATAAGGAGAATCCCAATGGGGGAACACAGGTTTCAAATTGGTGATATTGAACATTCTCTG TCACTTCAAGCAAAAACACTTGGAGTCATCAAATCCTGAAATTTTGGGGAAACAATGAGAATATCACACAGCTAAACAAC CTCAATCTATACATAATTGAATAATAGATATATAATGTGGGAGGGGCAATTGAAGTTTCACCTTTCAACAGCTTGCTTGA GGTCTTGGTCATCAATTCAAACTGCAAATTGTTGATGTGTTATGGCTTCGAAGACAGGACATTAGTTTTTGATAGATTCA TCAATTCATCAACCACAATCAAATAATGTAATGGTGTTGATTGCAATTTTGTTTGCCATTCTTTTTGTCTGTATAGTTAC TAATATAGGACAATATACTTTTTTTTAATAATATAATTGTAAGATTTGTCGTAATCAAGGGATTCATATCATGATGTTCA CGAAACAATTTTGAATGCATCAAAGAAATAACTTTTAGATCAAATGAAGACTACTTTTTTCTCATCTCC
CDS sequence (LotjaGi5g1v0246000.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGGCTAGGGATGTTTGATGGCGAGCCATCAAGTCAAGCATATGGCAACCTTGGTCCAAGAGATGTGTGCACCCAACC TCACCAAGAGCTAGCCCTTGAAGCTGCTAGACAAGGGATTGTGCTCCTAAAGAACAGTGGTCCCTCTTTGCCTCTCTCCA CTCGACGCCATCGCACCCTGGCTATCATTGGGCCCAATTCTAATGCCACTGTCACAATGATAGGAAACTATGCTGGTATT GGTTGTAGATACACAAGCCCTTTAGAAGGAATAGGAAAGTACGCAAAGACTATCCACGAGCTCGGGTGTGCAAATGTGGC TTGCACTGATGACAAGCAATTCGGGTCAGCTCTGAATGCAGCTCGTCAAGCAGATGCGACGGTTCTAGTGATGGGCCTGG ACCAGTCCATTGAGGCTGAAACCGTGGACCGGGCTGGCTTGCTTCTTCCCGGGCGTCAACAAGACCTTGTGTCAAAGGTA GCAGCTGCCTCTAAGGGCCCAACCATTTTGGTCTTAATGTCTGGTGGGCCTGTGGATATAACTTTTGCAAAGAATGACCC ACGAATTGTGGGCATCTTGTGGGCTGGATATCCTGGTCAAGCTGGTGGTGCTGCCATTGCAGATGTCTTATTTGGAACAA CTAATCCTGGGGCAAGGCTACCAATGACATGGTACCCACAAGGCTACATTCAAAACTTGCCAATGACAAACATGGCAATG AGACCAAGCCGACCCACAGGGTACCCAGGAAGAACCTATCGATTCTACAAAGGTCCTGTGGTGTATCCATTTGGTTATGG ATTGTCCTACACCCACTTTGTTCACACACTAGCTAGTGCACCCAAAGTGGTGTCTGTGCCTGTAGATGGCCATCGCCATG GAAATGTCTCAAACATTTCAAACAAGGCAATTAGAGTGACACATGCACGGTGTGGCAAGCTTTCTGTTAGCCTTCAAGTT GATGTTAAAAATGCTGGGTCCATAGATGGCACTCACACTTTGTTAGTGTTCACAACACCACCTAGAGGTAATGGTCATTG GGCACCGCGCAAGCAACTAGTGGCGTTTGAGAAAGTTCATATTCCTGCTAAGGCTCAGCGGAGAGTGCGAGTTAACATTC ATGTTTGCAAGCTTCTGAGTGTGGTTGATAGGTCTGGTATAAGGAGAATCCCAATGGGGGAACACAGGTTTCAAATTGGT GATATTGAACATTCTCTGTCACTTCAAGCAAAAACACTTGGAGTCATCAAATCCTGA
Protein sequence (LotjaGi5g1v0246000.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRLGMFDGEPSSQAYGNLGPRDVCTQPHQELALEAARQGIVLLKNSGPSLPLSTRRHRTLAIIGPNSNATVTMIGNYAGI GCRYTSPLEGIGKYAKTIHELGCANVACTDDKQFGSALNAARQADATVLVMGLDQSIEAETVDRAGLLLPGRQQDLVSKV AAASKGPTILVLMSGGPVDITFAKNDPRIVGILWAGYPGQAGGAAIADVLFGTTNPGARLPMTWYPQGYIQNLPMTNMAM RPSRPTGYPGRTYRFYKGPVVYPFGYGLSYTHFVHTLASAPKVVSVPVDGHRHGNVSNISNKAIRVTHARCGKLSVSLQV DVKNAGSIDGTHTLLVFTTPPRGNGHWAPRKQLVAFEKVHIPAKAQRRVRVNIHVCKLLSVVDRSGIRRIPMGEHRFQIG DIEHSLSLQAKTLGVIKS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 418 | 418 | 1.7E-260 | – | |
| PANTHER | 1 | 418 | 418 | 1.7E-260 | – | |
| Gene3D | 25 | 272 | 248 | 2.3E-64 | ||
| Pfam | 40 | 270 | 231 | 8.5E-53 | ||
| SUPERFAMILY | 40 | 273 | 234 | 4.97E-49 | ||
| Gene3D | 300 | 416 | 117 | 4.8E-12 | ||
| SMART | 332 | 403 | 72 | 5.6E-11 | ||
| Pfam | 333 | 401 | 69 | 7.7E-11 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Hydrolase activity, hydrolyzing O-glycosyl compounds | Catalysis of the hydrolysis of any O-glycosyl bond. | ||
| Biological process | Carbohydrate metabolic process | The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. |
Expression pattern of LotjaGi5g1v0246000.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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