Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

LotjaGi5g1v0246600.3

Overview

Field Value
Gene ID LotjaGi5g1v0246600
Transcript ID LotjaGi5g1v0246600.3
Related isoforms 4
Lotus japonicus genome version Gifu v1.2
Description Proteasome subunit beta type; TAIR: AT5G40580.3 20S proteasome beta subunit PBB2; Swiss-Prot: sp|Q7DLS1|PSB7B_ARATH Proteasome subunit beta type-7-B; TrEMBL-Plants: tr|I3STF0|I3STF0_LOTJA Proteasome subunit beta type; Found in the gene: LotjaGi5g1v0246600
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr5:55514473..55517494) extracted from Lotus japonicus Gifu genome v1.2.

AGTATGACTAAGACGGTGGATCTTCCTCCCAAGGGCGGCTTCAGTTTTGATCTCTGCAGAAGAAATGCAATGCTTGAACA GAAGGGCCTTAAGGGCCCATCCTTTCTGAAGACTGGGACGACTATTGTTGGTTTAGTTTTCCAAGTATGAATGGCTTATA CTTCATCTTATGTGGTTATTTTGGGTTCACTATTTTTTTCTGTGTCTTCTTTATCATGGTGAGTTAATGACCAAAACACG TAGGCCTCATATTGAATAGTGGGTCCAACATACAGGACGTGAGCTCGTGTTTCACCACGCTCAATCTAGAATGACTTCAA ATATATAAGTGGTATATAATCGGTTGAATTGGGTTTTATTAGTGGCAGGGAAGATGTGCTTAGGACGTGTCTTGTGTTCA AATTTTATGATGTTGGAGCAATATTTGGTTGCATTTTTTGGAGGGAGGGGAGTGATGAAATTGGGAAGCCTAGAATGACA TGTTGTCTTGATTGTTATGTTCTTAGCCTAGCAACTTTTTGGACCCAACTAGTATAATTACAGTAGCACTATGCCTCCTC TCTCTCTCTCTCTCTCTTTCTCTAACAACCTCGCTTGTATCTTATGGTATTTGTTAAAATTTATTCTAAAATATATGAAT GGTTGATTTTATTTTCTGGACGGCCTTTAGAAACAATTGGAAGCAAGTAAAGTTGTAAAACTCATGCATTGGTTTATGAA GATGGCAATGGATAATTGGTTGCTCATGTAATTTCTTATCATATTGAGCTCAGTGGTGGATCTTTAGTTGTTCGGTTGAG TTTTTATCTTGCCTGCCTTGCTTCATCAAGCTGGGGAATAATATTAATCAATCTGGCTGTGGTTTTAATGTTGAAGTGGG GATTTAATTGCACGTTTTGTATGGCTAATTTGAAATTGAGCTCCCTTGTCTAAAGATTGAGTTCTTATGAAGTGATCCGG TGCACTCTAACTTTATAGCTTACAGTTAATGTGGTTATCCCCCTTTTTGTTGCTTTTAGTATTGCTGATCTTTTACGGAG CTGTTAGTCTCAGTTGGTTTTGTTAGTGGCAATTATCAGGTTGTTGATCATTGCACTTGGCTGCTACGATTTAGTTAGAA AGTTTTTCAGTGAAACTTACATGTCTATATATTCAAAATACTGCAATCAAACTCAACAATACAATACAAAGAAGTATTCA CTGAAATACTGTTTCTCACTTTATTTCATCATCTTGAAAGCTGAACTACAGAATTTTTCCATTTTACATCTGTGCTCTTC ATTACTGTCCATGGCATGGTCACCCATACCAAATACGTTTTTATATAACTGCATGTTTTGATTGCATATTTTCTGTTTTT AATGTCATAATTTGTAAACTATGATCAGGAACGGAACCAAGTGCAAAGAAAATGGGGCAGTCACCCCCCAAGAGAAAACT ATTCCTTAATAGAATGGTTTTCAAATGATGTATTTGGCCCCCTCAAAATTTTTAGACTACCTATTCCAATAAGCTATTGT TGATTTAGTGTGTTAAATTTTCGCCTCCTTGCCTGTTTTATTTTCTAGTTCTGTCCCTGACTGATCTAATTCTGACGTTT TCCACGCAAAAAATTTGCCACAGGATGGTGTCATTCTAGGAGCAGATACTAGGGCAACTTCAGGATCCACAGTTGCTGAT AAAAACTGTGAGAAAATTCATTATATGGCACCCAACATATATTGCTGTGGAGCAGGAACTGCTGCTGACACAGAGGCTGT AACAGGTATATTTTGAAATGCATGCTATAACATTTTTACTTCATACCTTGTGCATAGTGGCATATAGGTGTTGTTTAAGT TTTGCTCTTGTAATATGGTAAAACCATTGAAAATGGGCTGTATTTACTGCAGACATGGTTAGCTCCCAACTCCAACTACA TCGCTACCATACTGGTCGAGAATCGAGAATTGTTACAGCACTAACCCTTCTTAAGAGACACCTCTTCAAGTTGAGTTTTT AGACCTTACATCTCTATTGAATTCGATCTCTGTATCAAACTCTGATTCTGGTCTGACTCTTAAAATTATTCTGCAGTTAC CAAGGTCAGGTCTCGGCTGCCTTAGTTCTTGGTGGAGTTGATGCAACTGGCCCTCATTTGCATACTGTTAGTTCATTGCC TAAACCTTTCTTTTGTACTTAACTTTCCTTGTTTTGAATGCATATAGTTTGATTTCTCATGACAATTCATGACATTTTGT GCAGATTTATCCACATGGTTCAACTGACACACTCCCATTTGCTACCATGGGATCAGGTTCACTTGCTGCAATGTCTGTAT TTGAGTCTAAATACAAGGAAAGCTTGACTGTAAGTGACTAAGTGAGCATATTAAGGCTCAGAAATCATGCTCACTTCAAT ATCTCTTACTAAAATAATTTTGAGGAAAGATGCTGTTGAAGCTTTCTAGACACGTAATTTGATAAGATTCTTTCAAATGT TATTCTATTTATAATCTTTTTATGGAATGAAACTAATATGTAAATTTTGAGTCTAAATATTACAATGTGCATTGTAATTG TTATAATTGATGATTGGTGATACTGGGATTGTATATGTAATGTTGCAATTTTATAGATATTTCAATTCACTATAAACATT CTGCTGTGGTGCAGAGGGATGAAGGAATAAAAATAGTTGTTGAGGCAATATGTGCTGGTGTTTTTAATGACTTGGGAAGT GGAAGTAATGTTGATGTTTGTGTCATAACCAAGGTTAGTGCCTTGATGCCTAATACTAGTACAAGTTATTGTTCGAGGGG ATGAATCTGATTTTAATTTGTGCAAATTCTTTACTTTTTCTTCACAGGGACATAAGGAATATCTCAGGAATTACCTCACA CCAAATCCTCGCACATATGTCAATCCAAAAGGCTTTACTTTTTCCAAAAAGACTGGTTTGTTGCAAACTATACTAATTTA TTACACTTGAGACCAGAATAAACTAAATTGTTTTGCTTAGCATTGTGCATCATTATTTGTAG
Download Genomic Sequence

CDS sequence (LotjaGi5g1v0246600.3) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGACTAAGACGGTGGATCTTCCTCCCAAGGGCGGCTTCAGTTTTGATCTCTGCAGAAGAAATGCAATGCTTGAACAGAA GGGCCTTAAGGGCCCATCCTTTCTGAAGACTGGGACGACTATTGATGGTGTCATTCTAGGAGCAGATACTAGGGCAACTT CAGGATCCACAGTTGCTGATAAAAACTGTGAGAAAATTCATTATATGGCACCCAACATATATTGCTGTGGAGCAGGAACT GCTGCTGACACAGAGGCTGTAACAGACATGGTTAGCTCCCAACTCCAACTACATCGCTACCATACTGGTCGAGAATCGAG AATTGTTACAGCACTAACCCTTCTTAAGAGACACCTCTTCAATTACCAAGGTCAGGTCTCGGCTGCCTTAGTTCTTGGTG GAGTTGATGCAACTGGCCCTCATTTGCATACTATTTATCCACATGGTTCAACTGACACACTCCCATTTGCTACCATGGGA TCAGGTTCACTTGCTGCAATGTCTGTATTTGAGTCTAAATACAAGGAAAGCTTGACTAGGGATGAAGGAATAAAAATAGT TGTTGAGGCAATATGTGCTGGTGTTTTTAATGACTTGGGAAGTGGAAGTAATGTTGATGTTTGTGTCATAACCAAGGGAC ATAAGGAATATCTCAGGAATTACCTCACACCAAATCCTCGCACATATGTCAATCCAAAAGGCTTTACTTTTTCCAAAAAG ACTGGTTTGTTGCAAACTATACTAATTTATTACACTTGA
Download CDS Sequence

Protein sequence (LotjaGi5g1v0246600.3) extracted from Lotus japonicus Gifu v1.2 Proteins.

MTKTVDLPPKGGFSFDLCRRNAMLEQKGLKGPSFLKTGTTIDGVILGADTRATSGSTVADKNCEKIHYMAPNIYCCGAGT AADTEAVTDMVSSQLQLHRYHTGRESRIVTALTLLKRHLFNYQGQVSAALVLGGVDATGPHLHTIYPHGSTDTLPFATMG SGSLAAMSVFESKYKESLTRDEGIKIVVEAICAGVFNDLGSGSNVDVCVITKGHKEYLRNYLTPNPRTYVNPKGFTFSKK TGLLQTILIYYT
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
SUPERFAMILY
SSF56235
11 222 212 2.65E-57
IPR029055
PANTHER
PTHR11599
25 246 222 3.0E-127 –
PANTHER
PTHR11599:SF128
25 246 222 3.0E-127 –
ProSiteProfiles
PS51476
32 210 179 39.706
IPR023333
Gene3D
G3DSA:3.60.20.10
39 246 208 2.5E-68
IPR029055
CDD
cd03763
39 221 183 1.29375E-124 –
Pfam
PF00227
40 210 171 6.4E-42
IPR001353
PRINTS
PR00141
40 55 16 3.6E-7
IPR000243
PRINTS
PR00141
160 171 12 3.6E-7
IPR000243
PRINTS
PR00141
171 182 12 3.6E-7
IPR000243
PRINTS
PR00141
196 207 12 3.6E-7
IPR000243

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0004175
Molecular function Endopeptidase activity Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain.
Subterm of
GO:0004298
Molecular function Threonine-type endopeptidase activity Catalysis of the hydrolysis of internal peptide bonds in a polypeptide chain by a mechanism in which the hydroxyl group of a threonine residue at the active center acts as a nucleophile.
Subterm of
GO:0005839
Cellular component Proteasome core complex A multisubunit barrel shaped endoprotease complex, which is the core of the proteasome complex.
Subterm of
Part of
GO:0051603
Biological process Proteolysis involved in cellular protein catabolic process The hydrolysis of a peptide bond or bonds within a protein as part of the chemical reactions and pathways resulting in the breakdown of a protein by individual cells.
Subterm of
Part of

Genome browser

Expression data

Expression pattern

Expression pattern of LotjaGi5g1v0246600.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…