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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0248000 |
| Transcript ID | LotjaGi5g1v0248000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Fumarate hydratase, class II; TAIR: AT2G47510.1 fumarase 1; Swiss-Prot: sp|P93033|FUM1_ARATH Fumarate hydratase 1, mitochondrial; TrEMBL-Plants: tr|V7BJH7|V7BJH7_PHAVU Uncharacterized protein; Found in the gene: LotjaGi5g1v0248000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:55676696..55683673) extracted from Lotus japonicus Gifu genome v1.2.
GCATGATGAGAAATGAGAAAAGTGAGACATAACTTTAAGTTGCATCCCTCTTTTTTTTTCTATCTCATTTTCAATCTCTT TCCATTTTGGTTATCACTAACCATCCATATCTCTCATGTCTCACTCTTCTATTTCCATTTCAGTGTGAGTGTGGCATGGA ATTGAGGTGTGTAATGTAAGTATATTTTCTTTTTTCTTGGACTCAGCCATGGGCTTATTTTGGCCACTCAACTCAAAATA AATAAAACTAGTCAAGATTCCCATGGGCTTGCTATCTATTTTATAAGCAATAATTATTTATTCACACCTCAAAATGAGGT GGAATGAGGTGGAGGAAGAGAGAGATAGGAAGAAAAGAAAAAGTAAGAGTGAGAAAGTATAAAATGTGATAGATGATAAG ATGAGAGAGATAGAAATAAAAAGATGTGGAAATGAAGTGTATAAAAACAGAGGTGTGTATATATCATTACCCATTTTATA AGTAGTGAGCTTTTTTCAGCCATTGGTTGTTACTAGGTTGAACTAGCCTCAGAAAAATAAAACAAAAAACTTGTTGCCCA TTCTCATGTTTTTCATTTGACCAAAAATCAATAATTTCATATTATTCATGGACATAATAGAAAAATGAGTAACCAAAAAA AATAATTTAACTCATGAGCTTAATGAATAGTAAGAAAAAGAATAAAATAGTCCTAGCTACAGGCACATCTTCCAAGAAGA CTGCGGCGGCGCGTGTCATTGGCTACTTGAGCATATTTCACATTATTCTCGTGCTTCGTCTTCATCAGATTGATCAACAA TGGCGTTGTACGTTTTGTCACGTCGTTTATCATCTGGATCAACCTCCACGACGGCGCTCGCCTTGCGTTTCGTCTCCGCT TCCAGATCCTACTCCTCCTCCTCCTTCCGGGAAGAACGAGATACCTTCGGACCCATCCAAGTTCCCTCCGACAAGTTCGT CTTCCTCCTTTTCCTTCATCTCCTCCTCCTTCTCCTCCCTCTTTCTTCTGACACTGTTCTATCCCTCTTTCATCAGATTA TGGGGAGCACAGACTCAGCGATCGTTGCAGAACTTCGACATCGGCGGCCCCCGCGAACGCATGCCGGAGACAATCATTCG CGCCTTTGGCATCTTGAAGAAATGCGCTGCCAAGGTTGGATTTCAGCGTGAATTGCCTGTTCTGAAGTGAATTTCAATTT GAATTTGATTTTCGTTATTCAATTGCAGGTGAACATGGAGTACGGCCTTGATCCCACGATTGCGAAAGCGGTTATGCAAG CGGCGCAAGAAGTTGCTGAGGGAAAGCTCAATGATCATTTTCCGCTTGTTGTGTGGCAAACTGGCAGTGGCACTCAGAGT AACATGAATGCTAATGAGGTTGGTACTTTGTGCTGAACTGAACACTGTTAGTGTTAATCCATTTGATCACTGCAGTGAGT GAGTGAAGTTTTGTATTGAGTTTTTCAGGTTATTGCTAATAGAGCTGCAGAGATTCTTGGCCATAAGCGCGGGGAGAAGC ATGTGCACCCCAATGATCATGTCAATAGATCTCAATCTTCAAATGATACTTTCCCAACTGTAAGACTTTTGTATATCTAT AGCAATAGCAATAGCAATAGCAAGTTCATCTTCTGAAGTTTCTTGTTAAGTTGGTTCGCTATCTCGGGTAATTTCTTAGC AATTTAAACTTATCATGGGTCAATTTGTTTTTAATCTGTATTTGTTTCCATCTTTTCAGGTAATGCACATTGCAGCTGCT ATGGAGATAAACTCAAGAGTGATCCCCAGCTTGAAAACCTTGCATTCGACACTAAACTCAAAGGTTAGGATTCTAATTCG TAAGTTTGATATAGCATGTTGGATAGATACAGTCCCTCTCCTGCTAATTAGGGGTTGGCATGGTTTGGGTTCGATTAAGA AAAACTGAACCAAGCCTTGTTTCTCCAGAAATATGGTTGTAAAAGCTTAGCCAAACTGTTTTTCTTTTGTTGTGTATGTG TGTTATCTTATCTGAACTGAAAAGGAAAAAGAAAAAAAAACTATACCAAACTCTCTCTACTACCATCTTCCATTGCTTGT GATACTATGTCAGTTTCAATTTTTAGCAAATTATTTTTTCTGTAGCTGCCCGAGGGTATAAGAGTGTTGACTTACGATGC TATGGTTGAAGGGATCTATGAATCTCTGATGTCTATAACTGGTTCAGCTAATTGCATTGTTTGTGCATCAGTTAGTAAAC CATTTCAAAATACGAAAGTTGGACTAAGTATAAACTAGTTCTAATTGTTAATTTTATTTCAGTCTGATTAATTCAGTTTA GTAGTTCGGTTAAGTTTGTGACTTTTTTTGGTTTGCCCCTATTGCTAAGTCATGTCACATCTTGGTTAGAGGGGAATTTG AGTTATTTACATTATTAAACCTGACGTATTTTTTGCCATGCTTTATTAAAATATGAAGTTTGTGGCAGGTTAATATATGG TTCTGTTTTGCCGTTTATCTTATGGTTCTGGCCATTTAGCAAAACCGATACCAGTATTGTCAACGTAGGGTTCCCTTGGT TGCTTTCTTGCATGATAAGTTTTGAAGTCCTGTTACGAGCCTGCGGTTTTGTCTGGCTCTTTTTCTCAACTTTCTTTTTG GTCTATCATTACGCAATTTGCATTTTCAAATTACTGAAGAGTTATTGTGACAGGGAAACATGTTACAGACCTTTTAACTT TATTGAAACTGTTATTTTTGATGGCCTCTAATGTGGAATTTTAAACTCAAAACACCCATTTTGGTAATTGTTTTTCTTCT GCGAGCATTTATTTCATCAGTATTAACTTTTTTGTTTTTTGTTTTTAATTTTTTTACAGTCAATTGAATTCAAAGATATT GTCAAGATTGGACGCACACATACTCAAGATGCAACGCCGTTGACTCTTGGACAAGAGTTTAGTGGGTATACTACACAAGT AAGCTTGCTTTTGTTTGGCTTATGCAGTTGTGGATTCTGTTTTTCATTCGTATGTTGTAACATCCTGACAGTTGCGGGGA GTGATATCTCATTACTTATTCCTTCATTGGCAGGTGAAGTATGGTATTGATCGAGTGATTTCTACTTTGCCGCACATGTA TCAGGTTAGACACTCAAGTGCAAATATTAACAGCTTGTTCATAAGTCTAAACTCACGTGCTTTAGGAGTTCTAACTGAGT AGAGTTGTTGCCTGAGCAGCTTGCCCAGGGTGGTACCGCTGTAGGGACTGGATTGAATACGAAGAAGGGGTATGTATGCT TTCTGAGAGCTAAGTTTTTCTTCTTTCATATTCTTTTTTAACCCATTGGTGTATTGTTTTATTTTTGTATCTTGCTATTT GACGGCTACTCATCATTCCTTTTGGCATTTTATTCCATATAATTTGAGCCTTTCATCAGGCATTTATTTCTTACTATCAT ACCAAAAAGTAATGGACATTGCATGGACAGATGTGCATACAAATTTTCCATCACTATCCTTTGATTTATTATGCAATTGT TGACAAATATGATGATATTGCACTAAAGATCTTATGGATATGGTATAGGTTTATTTGATTATAGAAATGAATACCCAAGG CCTGCCGCTTTAAATTGAAGAAAACACTTGTGGTTTAACTTTTGATGAAATAAATTTGATTCTAAGTGATAAATTTTTGG TTGATATTTAGGTTTGATGTTAAGATAGCAAATGCAGTAGCTGACGAAACACATCTGCCTTTTGTGACCGCAGAAAATAA GTTCGAGGCCTTGGTTTGTTACTGAAACTCATTTATTTTCCGTGTCTTTAATTTTTCATATGCTACTTTCATTATACTAG TTTCTTCCATGAATCTTGCATCAGCTTGCAGCGTGCTCATGGATGTGTTCTTCTTTTACAGGCTGCCCATGATGCTTTTG TTGAAACTAGTGGAGCCCTCAATACCGTTGCAACTTCTTTAATGAAGGTTGCTAATGATATACGGTTATTAGGAAGGTAT ACTGCTAGTTATATGACAGCGACTTATAAATTGCTCTCTTTTAATAGAAAATTATTATTTCATGGCTTTTCTTAATGATT TCCTATTATAGTGGTCCCCGTTGTGGTCTTGGTGAACTCATTCTACCTGAAAACGAACCAGGGAGCAGTATTATGCCTGT AAGATCATCATGCTAAGTGAATATATATTTGTTATAACCAGTTTCATTGTTACTTGCTTTAGTTTATTATTTTACTTGTC TCGCATCTGAGATTTGGCTCTGCCACAACCTTATTCTGTTTCAGGGGAAGGTTAATCCTACCCAGTGCGAGGCTTTGACA ATGGTCTGTGCACAGGTAGACATCTTTCGCTTCATTTTGTTAAAATACTTCGATATTATGACTTATGGAGTACTGATTGG CAAACTGTTTCTATAACTTGTAATAAGGTCACGCACTTTGAATTTTATGGTGACTGGCTGTTTCTGAATTTGTATTATGA TTCACGTCTTTCAGGTCATGGGAAACCATGTTGCAATCACAGTGGGTGGATCAAATGGTCATTTTGAGCTCAATGTGTTC AAGCCAATGATGGCCAGTTGTCTTCTGCATGTATGTCTTGCTATGTTATTTCTAATTTATAAATCACACAAATGTGGAGC TTCTGGCTAGCTTTTTATTTGGTTCAAAGATATCAGATAAGCTGAAAGCTCAGTTTGACTACTTTAGCTCTTCGGATAAT ATTATCGATAGGAAGTTAAATCCTTTTTTGTTAACCATTATTCGTACTTTTGAACTGGTCCAAGCACGCTGGTCATAGAA ACAGAGAGTGTTGATGCAGCACTAAGCTTGGTGCATAGGAGCACTAAAAATAAAATTCTGTACTTTTCCTGTCAGTTTGG CGTAAAAAATAATAATTCTACAGGTCAGATGGACTTGGCTGAAAAGTTAGAAACTCTGCACTATGTCAGTAGAGTAGGAT ATTGGGATGAAAAATACTTTAGACACACTGTTCTTTTGTTTCTTTTAGGCTGCTTATGTATATCTTTGTGATAACGTATA TGTCCCAAAAGAAGATAAAGGCTGGGGTGTGTGCACAACATGTTGACTTTTAATCTTGTTGATTCTATATTTATTGAATA TGGAAAAATATATACATTACCTAAACGATGTACTAAATGCGAAATCCTTATTTGACTATGATAGTCACTGAGACTGCTTG GAGATGCATCCGCTTCCTTCGAAAAGAATTGTGTAAGAGGAATTCAAGCTAATAGGGAAAGAATTTCAAAATTACTGCAT GAGGTGAGTTGATTACTTATTTGAAACATATCTCACATGATGCCAAATGTTAGATCCCTAACCTAATATACTCTGTTGTT TCATTTTGCATTCACCTTGCAGTCACTAATGCTTGTCACATCGTTGAACCCAGTAAGTTTCCGTCTGTCTAATTTTGCCA CTCCTTAAATTTCCCATTCTTTTGAACCTGACATTAGTTTGTTCGTTCCAGAAAATCGGTTATGACAATGCAGCAGCAGT TGCCAAGAAAGCCCACAAAGAAGGGACTACTCTCAAGGTGATAATGCCTTCTTTATCTTGTTTTTCTGTTTGTATGTCTT GCATATGTTGTCCTCTCTCGTGTTAGAAGTATGATATAAACTATTCATGTGTCTTCAAAGTTTAAACCAAAAACTTAAAA TTTTGGTTGGGATAATTAGTTCATGACTTGTATCAAACCCAGTGGTCAATAGTTCGATTATTATTGCCTCGCATTATTCT AATAGAGTTGAAACTTAGCACAAGATGACCGAGTCTGTGCATTGTTAACCTTCAAGCTCATTAGGCTTTTGCATGAGGGG GATGTGTGTTGTCTTCATCCCACAACTTTAGATTTTAGGATAGTTGTTCATGAAATCCGGAAAAAAATGATAGACTTGGA CCCCATATTACTAAGGTTGTAGGGAATCAAATCCCATGTAGTTAGTTATAACTAACTAATTCAGTGGGCCAGTGTGTGTA TCTATAACTAGACTGGTCGGCTTAGGGTAAGCATACTCAGTTGTAACAGTTTTGGGAAAGGACTGGCCTCTCGAAAGCCA TTCCCATTTTCTGTGATTTTAGTTTCTGCCTTACTCTGTAATTCTCTTCTCCACATGTGAAGCAAGGGTATTCCAGTGTG ATTCTCTTCTCCATAAGTTGCAGAATCCTTTCAACTTGCATTGGTTTATCTGTCATTGATATTTGATAGTGAACGTTTAT ATTAATAAATTAATATCTATTTAAGGATTTCCATGTGCTGTTCCTGAACTTCCAATAAAAGTAGTCTGAAATATCGAAAT TGAAATGATTGTGTAGGAAGCTGCATTGAAGCTTGGAGTACTGAGCTCTGAAGATTTCGACAATCTTGTGGTGCCTGAAA AAATGATTGGCCCATCTGAGATCTGATTGACTAGCATGTGATGCTTAGTTCCTATTAATTCTTGGTTCATCCATCAGCTG CATTGAATTAGTATTTTTGAAGCGTGCCCTTTGATTAGATTGAGCAATGGCAATCCGAATAACCAATAATTTTGACTACC TCAATTGATATTTTGAGGGAAGAGCTCCTGCAATTTGTAACGAGACACTAAATTTACTGACCCAAAATCCCAAATAAGCG GAAAAGTTTTTGTTTATTACTTTATACTTCTCACTACTTTAAGAGTTTTTTTTTTGTTTCTATTTATCTACCACTTGTTT TTTTTATTTTAAGAGAGCGTTAATTAAATTTTATTAATAGAATTTAATGGTATATAATGCACCGTCACACAGACATTCAA TGATAGGTTGTCAAGTCAGAAAATAAGCTTTTAATTTAATTAAAATAAAAATGATCATAAATGCATTTAAATACGTGTCA TTCAGTTATTAGACGTTTGTGAAAAAAAATTTAACACTAGCAGTGCACAATCATTAAACTCTATTAGGAAGTTAGGAGTA ATTTTAGAATAACAAAAC
CDS sequence (LotjaGi5g1v0248000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGTTGTACGTTTTGTCACGTCGTTTATCATCTGGATCAACCTCCACGACGGCGCTCGCCTTGCGTTTCGTCTCCGC TTCCAGATCCTACTCCTCCTCCTCCTTCCGGGAAGAACGAGATACCTTCGGACCCATCCAAGTTCCCTCCGACAAATTAT GGGGAGCACAGACTCAGCGATCGTTGCAGAACTTCGACATCGGCGGCCCCCGCGAACGCATGCCGGAGACAATCATTCGC GCCTTTGGCATCTTGAAGAAATGCGCTGCCAAGGTGAACATGGAGTACGGCCTTGATCCCACGATTGCGAAAGCGGTTAT GCAAGCGGCGCAAGAAGTTGCTGAGGGAAAGCTCAATGATCATTTTCCGCTTGTTGTGTGGCAAACTGGCAGTGGCACTC AGAGTAACATGAATGCTAATGAGGTTATTGCTAATAGAGCTGCAGAGATTCTTGGCCATAAGCGCGGGGAGAAGCATGTG CACCCCAATGATCATGTCAATAGATCTCAATCTTCAAATGATACTTTCCCAACTGTAATGCACATTGCAGCTGCTATGGA GATAAACTCAAGAGTGATCCCCAGCTTGAAAACCTTGCATTCGACACTAAACTCAAAGTCAATTGAATTCAAAGATATTG TCAAGATTGGACGCACACATACTCAAGATGCAACGCCGTTGACTCTTGGACAAGAGTTTAGTGGGTATACTACACAAGTG AAGTATGGTATTGATCGAGTGATTTCTACTTTGCCGCACATGTATCAGCTTGCCCAGGGTGGTACCGCTGTAGGGACTGG ATTGAATACGAAGAAGGGGTTTGATGTTAAGATAGCAAATGCAGTAGCTGACGAAACACATCTGCCTTTTGTGACCGCAG AAAATAAGTTCGAGGCCTTGGCTGCCCATGATGCTTTTGTTGAAACTAGTGGAGCCCTCAATACCGTTGCAACTTCTTTA ATGAAGGTTGCTAATGATATACGGTTATTAGGAAGTGGTCCCCGTTGTGGTCTTGGTGAACTCATTCTACCTGAAAACGA ACCAGGGAGCAGTATTATGCCTGGGAAGGTTAATCCTACCCAGTGCGAGGCTTTGACAATGGTCTGTGCACAGGTCATGG GAAACCATGTTGCAATCACAGTGGGTGGATCAAATGGTCATTTTGAGCTCAATGTGTTCAAGCCAATGATGGCCAGTTGT CTTCTGCATTCACTGAGACTGCTTGGAGATGCATCCGCTTCCTTCGAAAAGAATTGTGTAAGAGGAATTCAAGCTAATAG GGAAAGAATTTCAAAATTACTGCATGAGTCACTAATGCTTGTCACATCGTTGAACCCAAAAATCGGTTATGACAATGCAG CAGCAGTTGCCAAGAAAGCCCACAAAGAAGGGACTACTCTCAAGGAAGCTGCATTGAAGCTTGGAGTACTGAGCTCTGAA GATTTCGACAATCTTGTGGTGCCTGAAAAAATGATTGGCCCATCTGAGATCTGA
Protein sequence (LotjaGi5g1v0248000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MALYVLSRRLSSGSTSTTALALRFVSASRSYSSSSFREERDTFGPIQVPSDKLWGAQTQRSLQNFDIGGPRERMPETIIR AFGILKKCAAKVNMEYGLDPTIAKAVMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEKHV HPNDHVNRSQSSNDTFPTVMHIAAAMEINSRVIPSLKTLHSTLNSKSIEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQV KYGIDRVISTLPHMYQLAQGGTAVGTGLNTKKGFDVKIANAVADETHLPFVTAENKFEALAAHDAFVETSGALNTVATSL MKVANDIRLLGSGPRCGLGELILPENEPGSSIMPGKVNPTQCEALTMVCAQVMGNHVAITVGGSNGHFELNVFKPMMASC LLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKEAALKLGVLSSE DFDNLVVPEKMIGPSEI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 27 | 27 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 21 | 21 | - | – | |
| Phobius | 1 | 9 | 9 | - | – | |
| Phobius | 10 | 22 | 13 | - | – | |
| Phobius | 23 | 27 | 5 | - | – | |
| Phobius | 28 | 497 | 470 | - | – | |
| PANTHER | 34 | 495 | 462 | 1.2E-272 | ||
| Gene3D | 34 | 170 | 137 | 1.3E-59 | ||
| PANTHER | 34 | 495 | 462 | 1.2E-272 | – | |
| TIGRFAM | 36 | 493 | 458 | 4.2E-231 | ||
| SUPERFAMILY | 36 | 492 | 457 | 2.04E-153 | ||
| Hamap | 36 | 494 | 459 | 87.956 | ||
| CDD | 37 | 491 | 455 | 0.0 | ||
| Pfam | 44 | 374 | 331 | 2.3E-116 | ||
| PRINTS | 166 | 184 | 19 | 1.5E-35 | ||
| Gene3D | 171 | 439 | 269 | 5.3E-121 | – | |
| PRINTS | 212 | 230 | 19 | 1.5E-35 | ||
| PRINTS | 303 | 330 | 28 | 1.5E-35 | ||
| ProSitePatterns | 349 | 358 | 10 | - | ||
| PRINTS | 349 | 365 | 17 | 1.5E-35 | ||
| Pfam | 440 | 493 | 54 | 7.4E-24 | ||
| Gene3D | 440 | 495 | 56 | 2.2E-28 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Catalytic activity | Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. | ||
| Molecular function | Fumarate hydratase activity | Catalysis of the reaction: (S)-malate = fumarate + H(2)O. | ||
| Biological process | Tricarboxylic acid cycle | A nearly universal metabolic pathway in which the acetyl group of acetyl coenzyme A is effectively oxidized to two CO2 and four pairs of electrons are transferred to coenzymes. The acetyl group combines with oxaloacetate to form citrate, which undergoes successive transformations to isocitrate, 2-oxoglutarate, succinyl-CoA, succinate, fumarate, malate, and oxaloacetate again, thus completing the cycle. In eukaryotes the tricarboxylic acid is confined to the mitochondria. See also glyoxylate cycle. | ||
| Biological process | Fumarate metabolic process | The chemical reactions and pathways involving fumarate, the anion of trans-1,2-ethenedicarboxylic acid, the diastereoisomer of maleate. It is a key intermediate in metabolism and is formed in the TCA cycle from succinate and converted into malate. | ||
| Molecular function | Lyase activity | Catalysis of the cleavage of C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. They differ from other enzymes in that two substrates are involved in one reaction direction, but only one in the other direction. When acting on the single substrate, a molecule is eliminated and this generates either a new double bond or a new ring. | ||
| Cellular component | Tricarboxylic acid cycle enzyme complex | Any of the heteromeric enzymes that act in the TCA cycle. |
Expression pattern of LotjaGi5g1v0248000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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