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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0254100 |
| Transcript ID | LotjaGi5g1v0254100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Malate dehydrogenase; TAIR: AT5G58330.2 lactate/malate dehydrogenase family protein; Swiss-Prot: sp|O48902|MDHP_MEDSA Malate dehydrogenase [NADP], chloroplastic; TrEMBL-Plants: tr|A0A0R0HW29|A0A0R0HW29_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0254100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:56296493..56302691) extracted from Lotus japonicus Gifu genome v1.2.
GACAAGTGTCATTTCCATGGCCTTATACTAGCATTTCAAATCATCATCTTGTTCCCCTTCCCCTCCATTTTTTCCTTCTT CTCTTCACCCTTTCTGGTTCTCTCCCTCCACTTTGCATCCTCTCAATCAAACCCCATCTACCCTTTACAAAGTTCTTCCA AAAAACTGTTGCTTTTACTCCATACAAGAAGCATAAAAATTGCTTCTTGAAATTCTCATCTGATACTCTGTTTCTGCTGT CATGGCTGTGGCACAGTTCAACCCCACTTGCTCAAAAACCCATCTTTCCTCTTCCCAATCCTCATTTCTATCTAGGAGCA TCCATGGTCACCGCCACTGTGCTTTTGCACTGCCTCAGAGAACCCAACATGCTAGTATTTCTTGCTCTGTTGCTCCAAAG TAAGCAACTTTCTTGTTGTTTTCATCCACCATGTTAATGGGTCTGACTCAAATTTTCATCTTTTTTTTTATCAGTGAAGT GCAGGTGCCTGCTGTGCAAACCCTGGATTCTAAGGGCAAGCCTGAATGCTATGGAGTCTTCTGTCTTACCTATGATTTGA AGGCTGTAAGTATCCAAAATTCCAAATCAACCTGTTGTTTGTGTTTCATCCATGAATATGTCTTGTTTTGAGCTTGTATT GAATTTTGTGCATGATTCTCTGGTTATGTTTCTTCTCTACAATTTTTTGCTTGCTGGGTTTTGCTTTGGATTTTGAATTG CTGATGCCTGATGGTGTTTGGCAAAATGTGCATTTGGATACACAATTTCCTTGTCAGCATGTATTTAGGCTATTTTCATA GGACTTGGTTGGTGTATGTTTTGTCTCTAACTGCATATAGCTTGATTCCTCCTCTTTTGTTAAGTTTGTGGTTTGATGAG TTGCCTGAACTTTATTTTTTGAACACCAATAGACAGCCAAAGCTGTCAAGGATATTATTGATTGTCTCATGTGACCTTGC TGTCAAGGATATTATTGATTGTCTCATGTGACCTAGCTGTCTTTCTCAGGGCTGTCAAAATGCATAACTCATTGCATGTT TGGATTAGCTTATCTTTCCTCATAATCAATTATGAAATTCAGAAGTTGCTCACTTAAGCTTCTCGCCAGAATTGATTATG GATTTATAATCAATTGTAGAATGATTTCTAAACATGGCACTCAATGTTTAACTAATTTACTCTTTCAGTACAACACATCT GATAGGTAAGTTTTCAATCTTCTTGATGTAATTGGTGATCACTAATGCTGGAGAATTCTATAAGGAAATTGTAACAAATA TCTTCTACTGGATGTTGTCTGAGCCATTAGGATCAAATATCGAAACAATTTTGTGATAGGTTAGGTCCATTAAAACATCC ACCACATGGTAGCAATTCTTAATCCTATTAAGTCGTCTAGGAACAAGTCACCACTCATAACTAAAGCATATATTTCATTT GGCGCTCTTTTAGATGACCACTGTTCTACTTAAATGTAACAATAAAGTGTATAACAATTAGTCTGAGCTAATGTCTTTGA TAGTATGGTTTGACAGTACTGGACTACCAATGCTTCTTTGCTAGTGATAATGACTTTCATGAAATTTGTTAGGTTAGTAC TTGATATTTTTACTTACGGTACAGTATGCAATATGTTGCAGATTTTTTTTTTCTTTCCCATTTTATGTTTTGACATTCAA CTGAATATCCAATCTAATTTCAGGGAAGATACGCAACGTGAATTATGAACTCTATTTGAGGACATTAAAGTAATATTGAA TAGATAAATGTGTGCATGTGATTGTAATGTCTCCTTGATGTTAGAACACAGTTAAATTTGTCAATCTTAGCTGTATGTCT CATAGAAACATTTTGGTGATGTGTTTGCAGGAAGAAGAGACAGTATCCTGGAAGAAATTAATTAACATTGCAGTCTCAGG TGCTGCTGGAATGATTTCCAACCACCTACTTTTCAAGGTGGTATCTCAGTTTTAAATTCGGATTGTATGTTAATGTATTA GAATTTTAACTTATCTATTTCTTATCTCAACTTATCTATTTTCAGTAATTTTCTTATTATATCAGAAATTTCAGTTAGGA TTTAAAGTCACTGGAAAGGGTAGAATTGTTGCCTATCATTAAATTTGATGTTGCTGCATAGCATCTTCAAACTTGGATTT TTGTTTCTTTGTATTGATTAATAAATTTATTATGATCATCACATACCTGGATGAGTACCACAGTATGTTGTTGGACATGC TTCGCGTTTGAATTTACTTGTGTTACTCATCATACCGAGCAATTCAAACTCTCTACTAACTACTAAGTATATATTTGATC TTTATATGGTGGGTGTTTGACTTTCTTTTATCTTTTTTACATTACATGCAATAGAAATTGAATCTACGAAAATGCTAAAT TGAAGATAGGGTGGGTGTTTAGCTTTCTTTTCTAAAAAAAATCTGCATTATGTTAACTTTTCAAGCAGAAAATTTTAATT TACGTGTAATTTAAGATTTCTTTTTACGAGAGAATTACTACTACTTTTAATTGTCATGCAATTGAGTTTGACATTGGAAT CTGAGTTGGTTTATTATGTCAGCTTGCATCTGGTGAAGTTTTTGGTCCAAATCAACCTATTGCTCTGAAACTATTAGGAT CAGAAAGGTCATTCCAAGCTCTTGAAGGTATGCTTCCTTCAATAGGGAATTTGGCATTTGCTTTTGCCTAAATATGTAAA GCTAACCCAGTTTCTTCCACCTTCCAACTCTTAAATCTCAGTGGCTCTAAAAAACTGAATAAAAAACCAACTAGAGTTCA TTATTTTGTCTTTTTCTTATAACAGACATTGAATGCAAAATTAGATAATGTAGCATTTGCTATGGAAGATAAAACTGGAG AATCATGATGGTGCAGAAGTATGTGAAATAATTGAAGGTTATTATGTAAAGAGATGAGTAAAGGCAGAGAGTTGGGCATG ATTAAGAGAAGAGAACAAGCATATTACTTTTTTCCATTTTTATTTACCTAGTTCATATCTTTGTTTTAAGAGAGATAGAA GATACACCAAAATACCTCACTGTTTTTGCTGTAGCTGTGCATCACAGTATGTAACAAATCTCTGAGGTTTTCAACCTGAA TGTACGAATTCAACATGCAGGTGTTGCAATGGAATTGGAGGACTCCTTGTTTCCTTTGTTACGGGAGGTGAGCATTGGTA TTGATTCTTATGAGGTGTTCCAAGATGCAGATTGGGCTTTGCTAATAGGCGCAAAGCCTCGAGGACCTGGCATGGAGCGT GCAGACTTGTTAGACATAAATGGGAAGATTTTTGCTGAGCAGGTAAAGTTGTATTCAAATTTAAGCCATATATATTTCTT TCTCCTTAAAGAAAGTTAGCTATAATGACACTATATCTTTTGTTCCCACCCATGTATACAACAGGGAAAAGCTCTAAATG CTGTGGCATCGCGCAATGTCAAAGTTATAGTTGTGGGAAACCCTTGCAATACAAAGTCAGTTTGGTGTTTCATGTGTAAA CTTGAAGTTGAACATTGTGCCTGTTGATGCTAATGTTCATGTGTGTTTTAATGCAGCGCATTAATATGCTTGAAGAATGC TCCAAATATTCCTGCAAAAAATTTCCATGCCTTAACTCGCTTAGATGAGAATAGAGCAAAATGTCAGGTAACAAATTTTA TAAACTTCACTAAAAAATAAAATTGCTCTAAAGAAGAAAAAATAACAGCTTTCTTCTCTGCATTGCATCTATTAAATTCA CAGCTAGCTCTCAAGGCAGGCGTCTTCTATGACAAAGTGTCAAATATGACAATTTGGGGCAACCACTCAACTACTCAGGT CATTGAAGGATCAAGACTAGAATAATGCGCTTGAACTGAGTTTCTTCAACTCTCTTTTATGATATGGTGTTAACTTGTTA ACAGGTTCCCGACTTCTTAAATGCCAGAATTGATGGTGTTCCCGTCACAGATGTGGTTAAGGATCTCAAGTGGTTAAAGG AAGAGTTCACTGAAAAAGTTCAAAAGGTAAAATTTATATTAAGCATCCGTAATTAAATATGAGGAATAGAAAATGTTTAG TTTTGTTGTCGTTAGAGCTGACAATTAATTGTTTGATTGGCAGAGAGGTGGAGTGCTTATTCAAAAATGGGGAAGATCAT CAGCTGCTTCAACTGCTGTGTCGATAGTTGATGCGATGCGATCTTTAGTCACTCCTACTCCTGAGGGTGACTGGTTTTCT TCTGGTGTAAGTTGATATTAGTTAAAAGACCTCATGTATTTACTCAGTATAGAAATTAGATTAGCTTTTCAGAGCTTGTT TTACACATGCAATGTTTTTTTATTCTCTTCTGTTTACCATTTATACTCCAATCACAAAGTTTGTAATTGCCATACTAGGT ATACAGCAGTGGAAATCCTTATGGAATAGCTGAAGATATTGTTTTCAGTATGCCATGCCGATCAAAGGTGATTTGTTTGT GTCTATCATGTTCTTCATTCTTTTTAACTTGTAAAATTGTTTTTGTTCCTCCTGTGACAACAATCTTTATCCATTAGGGG GATGGTGATTATGAACTTGTCAAAGATGTTCTAATTGATGACTACCTCCGACAGCGAATAGCCAAGGTATATGTGAAACT TCATATTTAGTATATGAAGAAAAAAACACCTTCAGTCTCATATTTCAAGCATATATAAATGCAATTGTAATTATTAAAAT TTCACTATGTACTAGCCACTAGATGCCTCTATGTATAAACAATTTGGCTGTTAAAAGAACCTTATGATTCAGTGTAACTT AGTCTTATGTGAATTTTATCCGTTTATCACATCACATTTTGCAGTCTGAAGCTGAGTTGTTAGCTGAGAAGAGATGTACG GCTCACCTAACAGGCGAGGTAAACATCATACCTATTGTTCTTTCTGTTCATACTCATGATCTTCATTGTTAACTAAACAC ATTAAATTCTGTCTTATCAGGGAATTGCTGTTTGTGATCTACCTAGTGGTGATACCATGCTCCCAGGAGAAATGTAACAA GCCAAATCTCCCGAATGCCAAAGCAAAGCAGATACTGAGATAAGATCACACTAATTGAGGTAGAATAATGGTTGTTGTGG AATAAGGCTACAAAAGTTTTACTTAGCAATAACACAAGTATGAAAACATTCATCTGATTTTGAAACCATCAATAATGTGA GTAAAAGTAATTTCTTGTTAAGATGGGTCGGCCTACATTATCTTGTATGGTATTACTACAAATTGAACTGCCAATTAAGG GTCTTGAGCATACTTATCGTGTACTAAATTCCTTGTATATAAATGTATGTCCATCTCATGCATTCATTAATAGCTAATCC TCGAGTGACAACGATTCATTCATGTATATTTGGATATTTGTTGACACCGGTACAAACAAACACTAGCACTTACTTCGAGA TAAAAAGTGAACAGAACACTTCATATAAATTGAGATGAAATTTCATTAATATTGCACTCAACTTATATTCAAACACTTGT GAAAATCTACATGTGCATTATTGTATTAGCGTGAACAACGCCGAGGGAGCAAGAGTCATCATTAAAGACAAGTTAACAGG ATAATAGGAGGTTGAGAACTGAAGAGAATAGAAGGGTGAGGGACGGAACATGACACCGCACCATAACCTTGTGGCCACCA CCGCAGTGGTTTGCCGGAGTTGGTCGTGGTAGCTCGATTTGCTAGTGAAGAGGTCAAAGAAGGTTGAGGGAGAAAGGATG AGGCACACAATAAGGGGTTTTAGTGTCATAGTCAAATTAAAATTGAAGTTAATTAAAAACACAAGTTAACATGAAAAATT GCTTTTGGTTTCTCATCTCACCGCCTTAGTGTGATCCAACGCTCCTAAAATGTGCTTCACTAGTGCATGACCTACTTGGT AGTGCACCTTATAAGCTCTCGGAAGATAAGGAAAGAATAACATCATAGTATTAACTTTACTTTTATTACATAGTCATGAC GATAGTTAAAGTCATGGATGGTCACACTTGCATCATTAGGGGGCAAATGCCCCCACCAAATTTGCAAGTATTACACTAGT TTTATGCATAATATTAAGATATAGAGTCTTATATTGCCCCCACAAAGTTTAGAAGTTCCCCCATACAACCAAACTTTAAT ATTTTATTTGGTTGATGAGAGAAAGTGAGAAGAGGCAAG
CDS sequence (LotjaGi5g1v0254100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTGTGGCACAGTTCAACCCCACTTGCTCAAAAACCCATCTTTCCTCTTCCCAATCCTCATTTCTATCTAGGAGCAT CCATGGTCACCGCCACTGTGCTTTTGCACTGCCTCAGAGAACCCAACATGCTAGTATTTCTTGCTCTGTTGCTCCAAATG AAGTGCAGGTGCCTGCTGTGCAAACCCTGGATTCTAAGGGCAAGCCTGAATGCTATGGAGTCTTCTGTCTTACCTATGAT TTGAAGGCTGAAGAAGAGACAGTATCCTGGAAGAAATTAATTAACATTGCAGTCTCAGGTGCTGCTGGAATGATTTCCAA CCACCTACTTTTCAAGCTTGCATCTGGTGAAGTTTTTGGTCCAAATCAACCTATTGCTCTGAAACTATTAGGATCAGAAA GGTCATTCCAAGCTCTTGAAGGTGTTGCAATGGAATTGGAGGACTCCTTGTTTCCTTTGTTACGGGAGGTGAGCATTGGT ATTGATTCTTATGAGGTGTTCCAAGATGCAGATTGGGCTTTGCTAATAGGCGCAAAGCCTCGAGGACCTGGCATGGAGCG TGCAGACTTGTTAGACATAAATGGGAAGATTTTTGCTGAGCAGGGAAAAGCTCTAAATGCTGTGGCATCGCGCAATGTCA AAGTTATAGTTGTGGGAAACCCTTGCAATACAAACGCATTAATATGCTTGAAGAATGCTCCAAATATTCCTGCAAAAAAT TTCCATGCCTTAACTCGCTTAGATGAGAATAGAGCAAAATGTCAGCTAGCTCTCAAGGCAGGCGTCTTCTATGACAAAGT GTCAAATATGACAATTTGGGGCAACCACTCAACTACTCAGGTTCCCGACTTCTTAAATGCCAGAATTGATGGTGTTCCCG TCACAGATGTGGTTAAGGATCTCAAGTGGTTAAAGGAAGAGTTCACTGAAAAAGTTCAAAAGAGAGGTGGAGTGCTTATT CAAAAATGGGGAAGATCATCAGCTGCTTCAACTGCTGTGTCGATAGTTGATGCGATGCGATCTTTAGTCACTCCTACTCC TGAGGGTGACTGGTTTTCTTCTGGTGTATACAGCAGTGGAAATCCTTATGGAATAGCTGAAGATATTGTTTTCAGTATGC CATGCCGATCAAAGGGGGATGGTGATTATGAACTTGTCAAAGATGTTCTAATTGATGACTACCTCCGACAGCGAATAGCC AAGTCTGAAGCTGAGTTGTTAGCTGAGAAGAGATGTACGGCTCACCTAACAGGCGAGGGAATTGCTGTTTGTGATCTACC TAGTGGTGATACCATGCTCCCAGGAGAAATGTAA
Protein sequence (LotjaGi5g1v0254100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAVAQFNPTCSKTHLSSSQSSFLSRSIHGHRHCAFALPQRTQHASISCSVAPNEVQVPAVQTLDSKGKPECYGVFCLTYD LKAEEETVSWKKLINIAVSGAAGMISNHLLFKLASGEVFGPNQPIALKLLGSERSFQALEGVAMELEDSLFPLLREVSIG IDSYEVFQDADWALLIGAKPRGPGMERADLLDINGKIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPNIPAKN FHALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARIDGVPVTDVVKDLKWLKEEFTEKVQKRGGVLI QKWGRSSAASTAVSIVDAMRSLVTPTPEGDWFSSGVYSSGNPYGIAEDIVFSMPCRSKGDGDYELVKDVLIDDYLRQRIA KSEAELLAEKRCTAHLTGEGIAVCDLPSGDTMLPGEM
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 12 | 436 | 425 | 5.5E-252 | – | |
| PANTHER | 12 | 436 | 425 | 5.5E-252 | ||
| TIGRFAM | 55 | 436 | 382 | 6.2E-222 | ||
| SUPERFAMILY | 81 | 243 | 163 | 2.16E-42 | ||
| Gene3D | 91 | 243 | 153 | 1.9E-55 | – | |
| TIGRFAM | 92 | 412 | 321 | 5.0E-142 | ||
| CDD | 92 | 415 | 324 | 0.0 | – | |
| Pfam | 95 | 242 | 148 | 1.3E-35 | ||
| ProSitePatterns | 244 | 256 | 13 | - | ||
| Gene3D | 244 | 415 | 172 | 4.0E-56 | ||
| SUPERFAMILY | 245 | 417 | 173 | 1.85E-53 | ||
| Pfam | 245 | 413 | 169 | 1.1E-36 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Catalytic activity | Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. | ||
| Biological process | Carbohydrate metabolic process | The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. | ||
| Biological process | Malate metabolic process | The chemical reactions and pathways involving malate, the anion of hydroxybutanedioic acid, a chiral hydroxydicarboxylic acid. The (+) enantiomer is an important intermediate in metabolism as a component of both the TCA cycle and the glyoxylate cycle. | ||
| Molecular function | Oxidoreductase activity | Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. | ||
| Molecular function | Malate dehydrogenase activity | Catalysis of the reversible conversion of pyruvate or oxaloacetate to malate. | ||
| Molecular function | Oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor | Catalysis of an oxidation-reduction (redox) reaction in which a CH-OH group acts as a hydrogen or electron donor and reduces NAD+ or NADP. | ||
| Molecular function | Malate dehydrogenase (NADP+) activity | Catalysis of the reaction: (S)-malate + NADP+ = oxaloacetate + NADPH + H+. | ||
| Biological process | Oxidation-reduction process | A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. |
Expression pattern of LotjaGi5g1v0254100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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