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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0254900 |
| Transcript ID | LotjaGi5g1v0254900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Myb family transcription factor APL; TAIR: AT3G24120.1 Homeodomain-like superfamily protein; Swiss-Prot: sp|Q94A57|PHL2_ARATH Protein PHR1-LIKE 2; TrEMBL-Plants: tr|K7LKE7|K7LKE7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0254900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:56392305..56395919) extracted from Lotus japonicus Gifu genome v1.2.
CAACAACAAAAAAGAGAGAGAGAGAGAAGACTTGAGTTTAATATTGACTGGTTTTAGATTCCAAATTATACTATTCCAAC TTCCAAGTGACAACACTAGCAGCCTAGGTCCCTAGAAAATGATTGGAGGGAAAACATAGAGTGGCAAATCAATGCCACTG ATTTTTCATTTTTTATTTTATTTTATTTATTTTTAAATTAAAAAAAAAGTGAGAGCAGCAGAAAGTGACAAAATCACAGT AAAGCGTGACAGTGCCAGCTCCATTTGCAAGCTCTGTCCCTCTCTTCCTTCCTTCAAGTCTTGTGCTTTTCACATACCCA TTTCCTCATTTGCCCCACTTTCTCTTCCTCTTCCTCTTTCACCAAATGGGTCATCTCCATCTCCTTCCATTTCTGCCATA ACCAACTTTTTCTTCTTTGCTTTGCTTTGGTTCTTGGGTTTTCTGTGTTTCACGACCATACCAAGTAAGTACGAGGATGT TTTCTAGGTTGATTAGTCCTCATGAAGGAGCTATGGTGCAGGAAGACATGCAGGGTGGTGTGAACCACACTCACCTGGGA GACCCGTGTCTTGTTCTGACTTCTGATCCGAAACCTCGCCTTCGTTGGACTACTGACCTTCATGAACGGTTTGTTGATGC TGTCACTCAGCTTGGGGGTCCCAGTAGTAAGTGGTTTGTGTCTTGTGCCATTACTTTCTAGACTGATTCATTCAAATTTG ATACTTGTGTGTGTGTTCAATTGTGTTTTCTTGGTGGAAAAAAGTGTATCATGTAGTGGTTTTGGTTGTGATGCACTCAT TTTGGTGAAATGTGTTTGTTTATGTTTGCCTTGCTAGCTTGATACTGATAGGGAAATGGTTCTGTCATTCTGTGCTGTTG GGATTCCTATAGTAGTTTTAGTTCTTGTTTGTAAGGAGGGTCTTTTATTGAATTGTTGTCAAATTTGTTGGGAATTGCAG CTTTGGCTGGATTGCCGGTGGGGTTAATTTAGCTTGAAAGAAGCTAGGGTATTAAGCTTAGTATGAAGATCTCTGCTTGT GTCTTCAATTTTCATGTTCTTCTGTTGCTTTGCATCTTTCTTGTAGTTTGTCACCATACTAGTTCGGCCTCGGTCTCTAT TGCAGTGTATGCATATTTTCCCTTTACTTATGTTATGAGGCGTTTTGTAATGCGATGTTCTTCTGGAAAGGAAACTGAAC TAACCAAGGGTTGAAAAATGCCAATTTTAGCATGATGCCATGATACAGGAATGAGGGGAGGAGTAAGCTTTTAGTAATTG GTACCTCAACCTTGTCAAATTCAATTGTGGGAGAAAAGTTTCAACCTTGTCTAGTTCAATTTTGGGAGAAAAGTTCTTAA TGTGTGTGCCTCTAGAATTTTTCTAAAGGTCATGGGGATTTAATCCTCCTTTTTTTCTTTATTATTATTTTTTTAGTTTA CTATTGGTTTGGCTTCTGAGTTTCGACTCAATGATGGTTATTTCATTTTTTTAAAGGTGGTATAAACTTCAACCTTGAAC TGTAGCAGTTTGAAGGAACTATAAAGACAGTAAATAAGTTGAAAAGCCAAAATTTAGAAAATTGAGCAGCATTTTTTTCC TCGCTTCATAGTGGGGTTATTGTATGATTTGTGTATATTTTGTAGGAAATTCTTTTGAAAACGAACTAGAAACTAGAAAA GCCAAGAAATTTAGTTACACTTATTCTTTTCTTACTTTCTAGTGGAGCTTTGTCATAATATTTAGGAAACTCTTAGAAAA ATGACTGATATCATTATTATTGCGGCGATATCTAACTCTACCTCTAATTATTGGGACTATTGGGCTATCCTTTATCTTAT AAACTCTTCTAACGGTGGCTTTATTGGTCTCCTTCTCACAATTATATTATTAAAATTATTTGCAGAAGCCACACCAAAAG CAATTATGAGGACAATGAATGTCAAGGGCTTGACACTCTATCACTTAAAGAGTCATCTTCAGGTTCACTTGCATATCATT GTTGTAACACTCAATTATAGAATTGTTGGTTAATTGAATTTTTTGTTGTTGATATTTTCCTGTTTTATACCATTGCAGAA GTACAGGCTTGGTAAGCAATCAGGAAAAGATTCTGACGACGGAGGCAAAGATGGTATGTTCGTCTCTCTGCAGTCTGTAC CTTCGAAACATGTACCTGCATCTGAACTTTATAACATCAAAACTTTCCAATGATGTATCAGTATCATTTTCATTATAGTA GTCACTTGTTCATCTCTATTCTTTTGCTCGAGAAAGGTTAAATCTGGATCCTCTGTCTGTATTAAGTAAGGCCAAAATTG CACATGAGTAACTGTTTATAATATAAACTTTTGGTTTTAGTCTAAACTTTAACTCATTGAAAAAATTATGAAATGAATTT CAGCTTCATATCCTCTGGAAAGCCCTGGAACTGATAACTCATCTCCAATGTTACCAGCTTCTGATGCAAACGAGTAAGAG TTTTATGATTTTTCAAGAAACAATTTTGTCCTCCCTCAATCTCTGAGACTCTGAATGATTGTTGATTACCAAACTGAGAG TTGCAATGTCATCTATAGGGGTCATGAAGTCAAGGAGGCATTAAGGGCACAAATGGAAGTGCAAAGTAAACTACATTTGC TTGTGGAGGTAAAAAAAATTTTCACTTGGTGTATTATATTGTTTTGGTATTAATTTTTTACCATTGATATTCAAAGTAGA CTATGTCTATGTTCATAGTTGCATGCGGATGATTAGATGCTTTTTGTTTTTTCATTGTAGTTTGTTGGTATATGTCATTA AATAATAACCGAGATTTTCATTCTTTCATTTAATGTTTTGTCAAAGAAATTGTCTTATGTCCTATAAAAGCACCCTAACG CTTACTATAAGAATTATGGTACTACAGGCTGAGAAGCACTTACAAATTCGCCAGGATGCAGAACAGAGATATATGGCTAT GGTTGAGAGAGCGTGTAAAATGTTGGCTGATCAATTTATCGGCAATACAATTTTAGACAGTGACAGCCAGAAACTTCAAG GACTGGAAAATCGAGCACCAACTAGTTCCTTAGTTGACTCCCTCGGCTTTTGCTCCCTACCGGGTTCCATGGTAGGTGGA ATGCATGTTTCAGAAGTGCCGCATATCCTTCAGCCTCAGGGAGTTGACTATTCTACTGAAAGTTGCCTAACATCACTCGA GAGTCTTAGAGGGTTGGCGCTAGAAGGGTCCCCTGGTGGAACGAAGAAGAGAATGCTGAGCTTGGACTCTATGGTAGTGC CTTTGATCTGGAGTGAAACCAACATGAGAACTCAGGGGTTCCATTTAGCCCAAGTCAATCCTCAAGGAATAACTAGGTAT GGCATGTAGGTAGGAGTACATTATTCTCCATTCTTAGTTTGTAGGATTAAGTACTGAGATTATTATCTGTTCTTGTCTAA GATGTTAGTGGGAACAGAGCTGGAATCAACTTGTCTAATTCTGTAAATGTAAAATACTACTTGGCTTAACTTAGAGCATT ATAAAAAGTTGGTGTTGACACATTGACTCTCATTGCCTTTGTTTTTACTAGTTCCTTAATCAGGCACTAATATGCTTTAT ATAGATGATTTTCCA
CDS sequence (LotjaGi5g1v0254900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTTTCTAGGTTGATTAGTCCTCATGAAGGAGCTATGGTGCAGGAAGACATGCAGGGTGGTGTGAACCACACTCACCT GGGAGACCCGTGTCTTGTTCTGACTTCTGATCCGAAACCTCGCCTTCGTTGGACTACTGACCTTCATGAACGGTTTGTTG ATGCTGTCACTCAGCTTGGGGGTCCCAGTAAAGCCACACCAAAAGCAATTATGAGGACAATGAATGTCAAGGGCTTGACA CTCTATCACTTAAAGAGTCATCTTCAGAAGTACAGGCTTGGTAAGCAATCAGGAAAAGATTCTGACGACGGAGGCAAAGA TGCTTCATATCCTCTGGAAAGCCCTGGAACTGATAACTCATCTCCAATGTTACCAGCTTCTGATGCAAACGAGGGTCATG AAGTCAAGGAGGCATTAAGGGCACAAATGGAAGTGCAAAGTAAACTACATTTGCTTGTGGAGGCTGAGAAGCACTTACAA ATTCGCCAGGATGCAGAACAGAGATATATGGCTATGGTTGAGAGAGCGTGTAAAATGTTGGCTGATCAATTTATCGGCAA TACAATTTTAGACAGTGACAGCCAGAAACTTCAAGGACTGGAAAATCGAGCACCAACTAGTTCCTTAGTTGACTCCCTCG GCTTTTGCTCCCTACCGGGTTCCATGGTAGGTGGAATGCATGTTTCAGAAGTGCCGCATATCCTTCAGCCTCAGGGAGTT GACTATTCTACTGAAAGTTGCCTAACATCACTCGAGAGTCTTAGAGGGTTGGCGCTAGAAGGGTCCCCTGGTGGAACGAA GAAGAGAATGCTGAGCTTGGACTCTATGGTAGTGCCTTTGATCTGGAGTGAAACCAACATGAGAACTCAGGGGTTCCATT TAGCCCAAGTCAATCCTCAAGGAATAACTAGGTATGGCATGTAG
Protein sequence (LotjaGi5g1v0254900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MFSRLISPHEGAMVQEDMQGGVNHTHLGDPCLVLTSDPKPRLRWTTDLHERFVDAVTQLGGPSKATPKAIMRTMNVKGLT LYHLKSHLQKYRLGKQSGKDSDDGGKDASYPLESPGTDNSSPMLPASDANEGHEVKEALRAQMEVQSKLHLLVEAEKHLQ IRQDAEQRYMAMVERACKMLADQFIGNTILDSDSQKLQGLENRAPTSSLVDSLGFCSLPGSMVGGMHVSEVPHILQPQGV DYSTESCLTSLESLRGLALEGSPGGTKKRMLSLDSMVVPLIWSETNMRTQGFHLAQVNPQGITRYGM
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 20 | 307 | 288 | 1.6E-149 | – | |
| PANTHER | 20 | 307 | 288 | 1.6E-149 | – | |
| Gene3D | 35 | 97 | 63 | 3.3E-27 | – | |
| ProSiteProfiles | 36 | 96 | 61 | 11.206 | ||
| TIGRFAM | 39 | 94 | 56 | 3.2E-24 | ||
| SUPERFAMILY | 39 | 95 | 57 | 1.02E-16 | ||
| Pfam | 42 | 92 | 51 | 6.4E-7 | ||
| MobiDBLite | 94 | 128 | 35 | - | – | |
| Pfam | 134 | 179 | 46 | 1.8E-13 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of LotjaGi5g1v0254900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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