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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0255500 |
| Transcript ID | LotjaGi5g1v0255500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RNA pyrophosphohydrolase; TAIR: AT3G10620.1 nudix hydrolase homolog 26; Swiss-Prot: sp|Q9CAF2|NUD26_ARATH Nudix hydrolase 26, chloroplastic; TrEMBL-Plants: tr|I3T6R0|I3T6R0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0255500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:56452117..56455021) extracted from Lotus japonicus Gifu genome v1.2.
CTTCGTTTCACTAGTGTGTGCCTTCTTTCCATGCGTAGTGATGGCTTTACGCCGATTCGCCTACTCTCCTGCCACCACTT TTCACTTCCCGAAATACCCTTCCAAATTCCTCAAATTCCCCTCTCTGCCACTCTCCGCTTCCTCGCGTTCCTCCTTCTCA ACCATGGAAGCTCCCCCAGAAGGTTATCGCAGGAACGTTGGTATCTGTCTCATGAACAATGACAAAAAGGTGCAAACAAT CTCTCTTCATTCTCATGTGTCTGGTTTTCATAGTTTTTCACGAAAGCTTGATGTTAACAATGAACAATTCATGTTTCTGC AGATTTTCGCAGCTTCAAGGTTGGACATACCCAATGCTTGGCAAATGCCTCAGGTCATTCATCCTTGGATATCTTATCCT CCTACCATCTTTATCAATTCTGGGTGTTGCTAACCTATCCACTTTCTTCATTTTTTTTCAACAAAAGAGACTTTTATACA TGTTCATTTGGTTTCAACATAGCTTAATTCGAGATTAGTGAATTTGAACAAATAGACACATGAAAATTGTAAATAAGGTA TTGATGGTAACTAAATAAACAAACAAAGAAAAATCTAAAGGGCTTATGCTTTTATTTTTCTTACATGATATGTTGCAAAT CTCTTGTCCTGAGGGTTAGCTTAAGTCGTAAGAGCTAGGGGCATAAGGGTTGGGTGGGATGAAAGGTGAAAGGTCCAGGG TTCGAACCTGAAGAGAGACTAATTTACTAATATTACTAACAACTAACATTTGCCTATCAGAAAAATAAAATGTTGCAAAT CTCTTGTCATCTTGATGTGTGGCATCTTTCAGGGTGGTATTGATGAAGGTGAGGATCCGAGAAATGCAGTTATTAGGGAA TTAAGAGAAGAGACAGGAGTTAGATCAGCAGATGTGATCGCCGAGGTATGAATTTTTTCGATTTCATTACTTGCTTTGTC CCTACAAGATTTTATACTTACTCTATCCTGCATTCCTGCTTGCTTGTTGTAACTTGTAATTTATAAGGGGCATGCCATAT TTCATCATTCTAGGAACATGATGTAAGTGTAGATGTTAATGTGTTGCATCTCATCCATTTTGGATAACTATATCAGCTCA TAACAGGATATGGGAACCTTGTTCAATATTTACATCCTATCTTATTTATTTTTTTTATTAGTTTGAAAAACTTTGGAATG ACCGAATGAGTGAACTGAAATGGGCAAGGCCTTCTGAAGGTGTGTATGTATATGAAATCTTGCTAGATTTGAAGGCCTTA TTGCATTATATGTGTACCCTTTCTAAGGATTCAGGTTTTGTTGTTTACTAGTTTGTTGAGGAAGATACCTTATTCTCAGT AATTGTCTTTTTTTTTCTTTCCTTTTTATGCTAGTGGTTCCATTTATTTTCTATATTTTGTTTTGCGACAAAACTTCGTA AAAAAATAGATGTATCTTTCTGGCATAAAACGATCAGCTAGAGCCTAGAGTACTCTTTTCAGCTCAATAAACCCTAAGGT TTCATAGCCATTGCATGCTGTTAATTACAACCAAGTTACATCCAAATATCATTCTACTATTGTAGTCTGATCTGATCTAT CAATCAATGTCAATTCATCATCTAGCACAAAATGCAAAATAAAGCAATTATCTGTGTTTCTTCTATTTATAAATGTTTAT ATGTGTGGTTTTTTGTTGTAGGTACCTTTTTGGTTAACTTATGACTTCCCACCAAAAGTCAGGGAGAAATTAAACATTCA GTGGGGATCTAATTGGAAGGGTCAGGCTCAAAAATGGTAAACATCTGGATATGCTCAGTCTGGATATGTACACTTGTCTA GCTGTTTGTATGAATTGGGTGTGTAGGGGGGGAATATGTATTGAAAATTGGGAAGGCATGGAAGATAGGATATTTCGTTT TGACTCTGCTAAGTAATGTTTTTGACACTTTGATATTCACATTTCACAGGTTTCTTTTGAAGTTTACGGGGCAAGATCAA GAAATCAATCTTTTGGGTGATGGTACTGAGAAACCTGAATTTGGGGAATGGTCATGGATATCACCAGAACATCTGATTGA ACTTGTGAGTATATATACATGATCATGACAACATATGATAGCATGTTTGGATCAACTTATCTGTCCTCATTATCAATTAT GGCACCCATAAACTATTCACAAAAGCTTATTCCTAGAATTGATTTAGCATTTAAAATCAATTATACAAAAGTTTTAAACA TGCATATGACTTGGCCTATCTTCTTTGTGCAGGCAGTAGAGTTCAAGAAGCCTGTCTACAAGGAAGTCCTAGCTGTGTTT GCTCCACATCTCCAATAATCTTTGGTGAAAATTTTATGACTTCCAAATGACAGTTGCTGTGGATTGCTTTAAAAGTTATG TAATACATGAGTACCGAGTCATATTCTTTTTTTCTCCTCTTGGTCACAGGGACAGGCTGAGGGCTATTTAATGTATTTCT ATGTAACTGTCCATTTTTGTTCTCATGATGAAATACGACGAGCATGATGTTATGTATCAGAAAGTTAATGAGAATGATTT TTGCGACTAACCCGAAAATATTGTCCCCTTGACCCAAAAACACAAGATTTTGATCAAAATTTGTGCAGGAAATTAGAGTT TGTTTGATCACTGTTTGCAGTTTTCAGCTTTTATGAACAGAAAAAAACTTGTTTGATATGATTAGCTTTTTAAAACTGTT CTTTAAGTTCATACTTTCAGTTTTCAAAGCTGAAACCTAACATCTCAGAGATGTTTTCTGCTTTTGTTATTAGTTTTCAA ATCACATGCTGTATCAATAAAGCGGTTTTGCATCAATAAAGCGATTCCTGAACTGTCACTGTATTGCGATCTCAGCTTCC AATCTGTTATCAAATTGCTATTGAA
CDS sequence (LotjaGi5g1v0255500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTTTACGCCGATTCGCCTACTCTCCTGCCACCACTTTTCACTTCCCGAAATACCCTTCCAAATTCCTCAAATTCCC CTCTCTGCCACTCTCCGCTTCCTCGCGTTCCTCCTTCTCAACCATGGAAGCTCCCCCAGAAGGTTATCGCAGGAACGTTG GTATCTGTCTCATGAACAATGACAAAAAGATTTTCGCAGCTTCAAGGTTGGACATACCCAATGCTTGGCAAATGCCTCAG GGTGGTATTGATGAAGGTGAGGATCCGAGAAATGCAGTTATTAGGGAATTAAGAGAAGAGACAGGAGTTAGATCAGCAGA TGTGATCGCCGAGGTACCTTTTTGGTTAACTTATGACTTCCCACCAAAAGTCAGGGAGAAATTAAACATTCAGTGGGGAT CTAATTGGAAGGGTCAGGCTCAAAAATGGTTTCTTTTGAAGTTTACGGGGCAAGATCAAGAAATCAATCTTTTGGGTGAT GGTACTGAGAAACCTGAATTTGGGGAATGGTCATGGATATCACCAGAACATCTGATTGAACTTGCAGTAGAGTTCAAGAA GCCTGTCTACAAGGAAGTCCTAGCTGTGTTTGCTCCACATCTCCAATAA
Protein sequence (LotjaGi5g1v0255500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MALRRFAYSPATTFHFPKYPSKFLKFPSLPLSASSRSSFSTMEAPPEGYRRNVGICLMNNDKKIFAASRLDIPNAWQMPQ GGIDEGEDPRNAVIRELREETGVRSADVIAEVPFWLTYDFPPKVREKLNIQWGSNWKGQAQKWFLLKFTGQDQEINLLGD GTEKPEFGEWSWISPEHLIELAVEFKKPVYKEVLAVFAPHLQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 11 | 202 | 192 | 5.9E-101 | – | |
| PANTHER | 11 | 202 | 192 | 5.9E-101 | – | |
| Gene3D | 38 | 201 | 164 | 8.3E-53 | – | |
| Hamap | 43 | 202 | 160 | 32.689 | ||
| SUPERFAMILY | 44 | 200 | 157 | 2.84E-32 | ||
| ProSiteProfiles | 48 | 195 | 148 | 21.132 | ||
| CDD | 48 | 197 | 150 | 2.14556E-75 | ||
| Pfam | 49 | 192 | 144 | 9.2E-27 | ||
| PRINTS | 76 | 90 | 15 | 1.7E-6 | ||
| ProSitePatterns | 81 | 102 | 22 | - | ||
| PRINTS | 90 | 105 | 16 | 1.7E-6 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Hydrolase activity | Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. |
Expression pattern of LotjaGi5g1v0255500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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