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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0257900 |
| Transcript ID | LotjaGi5g1v0257900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Lectin; TAIR: AT5G10530.1 Concanavalin A-like lectin protein kinase family protein; Swiss-Prot: sp|Q41160|LCB3_ROBPS Putative bark agglutinin LECRPA3; TrEMBL-Plants: tr|I3SK58|I3SK58_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0257900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:56652168..56653170) extracted from Lotus japonicus Gifu genome v1.2.
AAAACTATCAAATATATATCGATCATCAACTCCACATTGATAATTATCAACAAAGCACATCAACCATGGCCACCCCCAAG AAAATTTCCTTCAACTTCCCGAAATTCACCCCAGGTGACGCAAATATAACCCTACAAGGTGGTGCCAAGATTTTAGATAA TGGGATCTTGGCCCTGCCTGATGATACATCAATTGAACAAAGCCGTGCTTTGTACACAACGCCTGTGCCCATCTGGGATT CTACCACTGGCGAGGTTGCAAGCTTCGTCACCTCCTTCTCTTTCATTGTGACTGACATTCCAAATCGTTATCCGGCTGAT GGACTTGTCTTCTTTTTGGCGCCATTTGGGACTCAGATTCCCAACAATTCAGGTGGAGGGGCGCTCGCTATAGTTGATCC CAACAATGCCTTCAATCGGTTTGTTGCAGTGGAATTTGATAGCTACATCAATAATGAGTGTGACCCGAGTTATAATCATA TTGGAATTGACGTTAACTCCTTGATTTCGTTGAAGACTGTGAAATGGAACAGAGTGTCCGGATCGCTGGAGAAAGTAAGT ATAATCTATGACTCTCTAGCTAAGACATTGAGTGTTGCTGTGACTCATGGGAATGGTCAAATTTCCACCATTTCTCAAGT CATTGATTTGAAGGCCGTGCTTCCTGAGAAAGTCAGTGTTGGTTTTAGTGGAACCATCTGTGACGGCAGGGAAAGACATG ACATCTTTTCATGGTCTTTCACTTCAACCCTGGCTTGAACATCGATACTGCCATGGAGTGATTAGATGTTGTGAACGTCA GTCGTATATCTATCTAAAATAAGCACCATGCATACATGCATGAGCAAGGTTCATTTATGTTTGTTTGTGTTGATGTTATC GTCTTGTGTTTTGGTGATTTGATATCGGTGAAAGTTTCCTAATTGAGAAGGTTTGTTCTCAAAGTTCATATATATATATA TATTTGTTGCAAATAAAATGGATTGCTACTTTAAAAAGGAATG
CDS sequence (LotjaGi5g1v0257900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCCACCCCCAAGAAAATTTCCTTCAACTTCCCGAAATTCACCCCAGGTGACGCAAATATAACCCTACAAGGTGGTGC CAAGATTTTAGATAATGGGATCTTGGCCCTGCCTGATGATACATCAATTGAACAAAGCCGTGCTTTGTACACAACGCCTG TGCCCATCTGGGATTCTACCACTGGCGAGGTTGCAAGCTTCGTCACCTCCTTCTCTTTCATTGTGACTGACATTCCAAAT CGTTATCCGGCTGATGGACTTGTCTTCTTTTTGGCGCCATTTGGGACTCAGATTCCCAACAATTCAGGTGGAGGGGCGCT CGCTATAGTTGATCCCAACAATGCCTTCAATCGGTTTGTTGCAGTGGAATTTGATAGCTACATCAATAATGAGTGTGACC CGAGTTATAATCATATTGGAATTGACGTTAACTCCTTGATTTCGTTGAAGACTGTGAAATGGAACAGAGTGTCCGGATCG CTGGAGAAAGTAAGTATAATCTATGACTCTCTAGCTAAGACATTGAGTGTTGCTGTGACTCATGGGAATGGTCAAATTTC CACCATTTCTCAAGTCATTGATTTGAAGGCCGTGCTTCCTGAGAAAGTCAGTGTTGGTTTTAGTGGAACCATCTGTGACG GCAGGGAAAGACATGACATCTTTTCATGGTCTTTCACTTCAACCCTGGCTTGA
Protein sequence (LotjaGi5g1v0257900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MATPKKISFNFPKFTPGDANITLQGGAKILDNGILALPDDTSIEQSRALYTTPVPIWDSTTGEVASFVTSFSFIVTDIPN RYPADGLVFFLAPFGTQIPNNSGGGALAIVDPNNAFNRFVAVEFDSYINNECDPSYNHIGIDVNSLISLKTVKWNRVSGS LEKVSIIYDSLAKTLSVAVTHGNGQISTISQVIDLKAVLPEKVSVGFSGTICDGRERHDIFSWSFTSTLA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 230 | 230 | 3.4E-69 | – | |
| PIRSF | 1 | 230 | 230 | 1.7E-84 | ||
| PANTHER | 5 | 229 | 225 | 6.0E-74 | – | |
| PANTHER | 5 | 229 | 225 | 6.0E-74 | – | |
| CDD | 7 | 229 | 223 | 7.58933E-86 | ||
| Pfam | 7 | 228 | 222 | 8.2E-58 | ||
| SUPERFAMILY | 7 | 229 | 223 | 3.26E-67 | ||
| ProSitePatterns | 120 | 126 | 7 | - | ||
| ProSitePatterns | 199 | 208 | 10 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Carbohydrate binding | Interacting selectively and non-covalently with any carbohydrate, which includes monosaccharides, oligosaccharides and polysaccharides as well as substances derived from monosaccharides by reduction of the carbonyl group (alditols), by oxidation of one or more hydroxy groups to afford the corresponding aldehydes, ketones, or carboxylic acids, or by replacement of one or more hydroxy group(s) by a hydrogen atom. Cyclitols are generally not regarded as carbohydrates. |
Expression pattern of LotjaGi5g1v0257900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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