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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0264800 |
| Transcript ID | LotjaGi5g1v0264800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein family; TAIR: AT5G39710.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q9FIX3|PP407_ARATH Pentatricopeptide repeat-containing protein At5g39710; TrEMBL-Plants: tr|K7N0N9|K7N0N9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0264800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:57457629..57459824) extracted from Lotus japonicus Gifu genome v1.2.
ATCCAATGAAGCTCCTCCTCCGTGTTTCATCCACCGTTGCCACCCTCAAAACCTTTTGGAACGTCCCTATCCGCGGCTTC ACTGCTGCTGGGACTGAGAAGGGTTTGGTTTCATTCAATGCAGTTGTTAAGAGATTGTGTGGGGAAGGGAAACTCAGAGA GGCTGAGGCGGTGCTTGAGAAGATGACTGACCCTGATTGTGCCACTTACAACACCTTGATCACTGCCGCGTGTGAGGAGA TGAATCACAATCCGAGTATTCCTTATGTACTTATTGTTGAGCTTTATCATCAGATGTGTGTCAGGGAGTTGAGTCCCAAC GAGACCACTTACAGGTGTATGATTCGATTGTTCTGCGATCGTAACAGGGTTGAGGAGGCTGTGGGGATTTTGAGGCTCAT GGCTGAGAAGGGTTTGTCCCCTCATGCTGATAGTTATAGCAGGATTATATCCCGGTTTTGCATAAACAAGGAGATGGGTA AGGCCTTGGAAATGAAGGTAGAGATGCTTGACAAGGGCATCTTTCCTGATGTTCACGCGTATGATTTGCTTATACAGCTA CTGTGCCACCACCGAAGACTGTTGGAAGCTCGTGATCTCTTCCAAGAGATGCTGCGCAGGGGTATGTCGCCCGAAGGGCG TACTTATGATACTTTGGTGGAGGCTTATTGTCTTAAAGGTGAATTCAGTAAGGTTTTTCATCTGCAGGATGAAGTCATAC AAAAGGGTTTTTTGCCTTATTATGTTACTTCCTTTTCACCGTCTCTTGTTACATACAACGCTCTTATTCATGGGCTTTGC TTTTTCCAGAGGCCTGACGAGGCTCTGGAGATTTTGAGGGGCATGCCTGAGATGCTCTTGGACCCTGATGAAGTTAGTTA TAGCGCTGTTATATCCGGGTTTCGCCGAATCCGGGAGCTGCGGAAGGCGTTTGAATTGAAGCTGGAGATGGATCAAAAAG AGACCTGCTGGCCGCTGGATCAAGTCACAAATGAATCACTTGTGAAAGACTTGTCGAATCACGATACTTTTTCTAGTCTC GTGAATGATTATTGTGCTGAAGATAAGGCGGAAATGGCTTTTAAATTGCGATATCAAGCTCAATATTTGCCAGATTCGGT TAGCTATTGTTTGTTACTTAATGGACTTCATAAGAAAGCTACGTCAAGATTTGCTAAGAGGCTTCTTCTGTCGTATTTTG TTGCTCACTGTTTGACTATCCCAAGTTATATAATATATGATATTCTGATAGAGAAATGTGCTAATAATGAATTTAAGAGT GTGGTAGAGCTTGTCAAAGGTTTCAGAATGAGGGGTTTAGTGAATGAAGCAGCCAGAGCTCGTGACACAATGCTTCACAG GAATTATAAGCCAGAGGGAGCAGTTTATAACTTATTAATATTTGATCATTGTATAGGTGGTAATGTTCATAAGGCATATG ATATGTACAAGGAGATGCTGCATTATGGTTTTGTTTGTCATATGTTCTCTGTACTTGCTCTTATTAAGGCTCTATATTGT GATGAAAGGTACAATGAGATGAGTTGGGTTATTCGAAACACATTGAGGAGCTGTAATCTCAATGATTCTGAGCAACTTAA AATACTTGATGAAATTGACCCCGAGAGATGTATAATTTATGCTCTTTTGGATGTGCTAGCTGAAAAAGCCATGGATGGCT TGTTACTTGATGGTGGAAAGTGTTCATATGCTTCAGCGTCGTGTCATGGCCGCTTCACTCCCACCACAATGGAAACAACA CAGTACATGCCTGAGGAGATGGTTCATGTGACCTCATCCACTTAAAGAATAACAAACAACACACCAGACGGTGCTCCTTC CCTAGTATTTCCAGAACCCCTTCCTCCATACTGAGCCAGATGCTGTTGCAAGTTCCTTGCAAGCTGAACAATTTCCCCAC AACACCGTCAGGCAGAGAAATTACCCCAAGCTTTTCAAGGGTAACCTTACTAACTCATTTCTTTCACTGTTGCATTTATA TCTTGTGTGTCCATGATCTGATTGTGGACTCTTGCTTAGATCTGGTGGTGGCCACTTCCTCTTCTCTCTTGTATTTTAAT GGTGTATAAAGACTGGATTTTGTTGTATTTTATTGTGTCTTAATTTAATGGATTTTGTTGTATTTTTCCTGCATTTTTGG AATACATTGGCCGCTTTTAAATTTTAAAGAACTAAG
CDS sequence (LotjaGi5g1v0264800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGCTCCTCCTCCGTGTTTCATCCACCGTTGCCACCCTCAAAACCTTTTGGAACGTCCCTATCCGCGGCTTCACTGC TGCTGGGACTGAGAAGGGTTTGGTTTCATTCAATGCAGTTGTTAAGAGATTGTGTGGGGAAGGGAAACTCAGAGAGGCTG AGGCGGTGCTTGAGAAGATGACTGACCCTGATTGTGCCACTTACAACACCTTGATCACTGCCGCGTGTGAGGAGATGAAT CACAATCCGAGTATTCCTTATGTACTTATTGTTGAGCTTTATCATCAGATGTGTGTCAGGGAGTTGAGTCCCAACGAGAC CACTTACAGGTGTATGATTCGATTGTTCTGCGATCGTAACAGGGTTGAGGAGGCTGTGGGGATTTTGAGGCTCATGGCTG AGAAGGGTTTGTCCCCTCATGCTGATAGTTATAGCAGGATTATATCCCGGTTTTGCATAAACAAGGAGATGGGTAAGGCC TTGGAAATGAAGGTAGAGATGCTTGACAAGGGCATCTTTCCTGATGTTCACGCGTATGATTTGCTTATACAGCTACTGTG CCACCACCGAAGACTGTTGGAAGCTCGTGATCTCTTCCAAGAGATGCTGCGCAGGGGTATGTCGCCCGAAGGGCGTACTT ATGATACTTTGGTGGAGGCTTATTGTCTTAAAGGTGAATTCAGTAAGGTTTTTCATCTGCAGGATGAAGTCATACAAAAG GGTTTTTTGCCTTATTATGTTACTTCCTTTTCACCGTCTCTTGTTACATACAACGCTCTTATTCATGGGCTTTGCTTTTT CCAGAGGCCTGACGAGGCTCTGGAGATTTTGAGGGGCATGCCTGAGATGCTCTTGGACCCTGATGAAGTTAGTTATAGCG CTGTTATATCCGGGTTTCGCCGAATCCGGGAGCTGCGGAAGGCGTTTGAATTGAAGCTGGAGATGGATCAAAAAGAGACC TGCTGGCCGCTGGATCAAGTCACAAATGAATCACTTGTGAAAGACTTGTCGAATCACGATACTTTTTCTAGTCTCGTGAA TGATTATTGTGCTGAAGATAAGGCGGAAATGGCTTTTAAATTGCGATATCAAGCTCAATATTTGCCAGATTCGGTTAGCT ATTGTTTGTTACTTAATGGACTTCATAAGAAAGCTACGTCAAGATTTGCTAAGAGGCTTCTTCTGTCGTATTTTGTTGCT CACTGTTTGACTATCCCAAGTTATATAATATATGATATTCTGATAGAGAAATGTGCTAATAATGAATTTAAGAGTGTGGT AGAGCTTGTCAAAGGTTTCAGAATGAGGGGTTTAGTGAATGAAGCAGCCAGAGCTCGTGACACAATGCTTCACAGGAATT ATAAGCCAGAGGGAGCAGTTTATAACTTATTAATATTTGATCATTGTATAGGTGGTAATGTTCATAAGGCATATGATATG TACAAGGAGATGCTGCATTATGGTTTTGTTTGTCATATGTTCTCTGTACTTGCTCTTATTAAGGCTCTATATTGTGATGA AAGGTACAATGAGATGAGTTGGGTTATTCGAAACACATTGAGGAGCTGTAATCTCAATGATTCTGAGCAACTTAAAATAC TTGATGAAATTGACCCCGAGAGATGTATAATTTATGCTCTTTTGGATGTGCTAGCTGAAAAAGCCATGGATGGCTTGTTA CTTGATGGTGGAAAGTGTTCATATGCTTCAGCGTCGTGTCATGGCCGCTTCACTCCCACCACAATGGAAACAACACAGTA CATGCCTGAGGAGATGGTTCATGTGACCTCATCCACTTAA
Protein sequence (LotjaGi5g1v0264800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKLLLRVSSTVATLKTFWNVPIRGFTAAGTEKGLVSFNAVVKRLCGEGKLREAEAVLEKMTDPDCATYNTLITAACEEMN HNPSIPYVLIVELYHQMCVRELSPNETTYRCMIRLFCDRNRVEEAVGILRLMAEKGLSPHADSYSRIISRFCINKEMGKA LEMKVEMLDKGIFPDVHAYDLLIQLLCHHRRLLEARDLFQEMLRRGMSPEGRTYDTLVEAYCLKGEFSKVFHLQDEVIQK GFLPYYVTSFSPSLVTYNALIHGLCFFQRPDEALEILRGMPEMLLDPDEVSYSAVISGFRRIRELRKAFELKLEMDQKET CWPLDQVTNESLVKDLSNHDTFSSLVNDYCAEDKAEMAFKLRYQAQYLPDSVSYCLLLNGLHKKATSRFAKRLLLSYFVA HCLTIPSYIIYDILIEKCANNEFKSVVELVKGFRMRGLVNEAARARDTMLHRNYKPEGAVYNLLIFDHCIGGNVHKAYDM YKEMLHYGFVCHMFSVLALIKALYCDERYNEMSWVIRNTLRSCNLNDSEQLKILDEIDPERCIIYALLDVLAEKAMDGLL LDGGKCSYASASCHGRFTPTTMETTQYMPEEMVHVTSST
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 392 | 392 | - | – | |
| Gene3D | 23 | 84 | 62 | 8.5E-8 | ||
| PANTHER | 29 | 246 | 218 | 5.3E-68 | – | |
| ProSiteProfiles | 33 | 67 | 35 | 9.054 | ||
| TIGRFAM | 35 | 60 | 26 | 0.0027 | ||
| Pfam | 35 | 61 | 27 | 0.0049 | ||
| Gene3D | 87 | 189 | 103 | 3.2E-22 | ||
| Pfam | 104 | 152 | 49 | 1.2E-7 | ||
| ProSiteProfiles | 105 | 139 | 35 | 11.772 | ||
| TIGRFAM | 108 | 139 | 32 | 3.4E-6 | ||
| ProSiteProfiles | 140 | 174 | 35 | 8.944 | ||
| TIGRFAM | 143 | 176 | 34 | 8.6E-5 | ||
| Pfam | 174 | 222 | 49 | 3.1E-11 | ||
| ProSiteProfiles | 175 | 209 | 35 | 12.266 | ||
| TIGRFAM | 178 | 209 | 32 | 2.2E-6 | ||
| Gene3D | 190 | 340 | 151 | 1.4E-28 | ||
| ProSiteProfiles | 210 | 244 | 35 | 9.767 | ||
| TIGRFAM | 213 | 244 | 32 | 0.0024 | ||
| PANTHER | 250 | 363 | 114 | 5.3E-68 | – | |
| Pfam | 252 | 299 | 48 | 3.0E-10 | ||
| ProSiteProfiles | 253 | 287 | 35 | 10.698 | ||
| TIGRFAM | 255 | 282 | 28 | 0.0012 | ||
| ProSiteProfiles | 288 | 318 | 31 | 8.155 | ||
| PANTHER | 338 | 520 | 183 | 5.3E-68 | – | |
| ProSiteProfiles | 338 | 368 | 31 | 5.59 | ||
| Phobius | 393 | 411 | 19 | - | – | |
| Phobius | 412 | 483 | 72 | - | – | |
| ProSiteProfiles | 422 | 456 | 35 | 6.412 | ||
| Gene3D | 424 | 541 | 118 | 5.8E-9 | ||
| ProSiteProfiles | 457 | 491 | 35 | 8.32 | ||
| TIGRFAM | 460 | 490 | 31 | 0.0022 | ||
| Pfam | 460 | 489 | 30 | 0.0029 | ||
| Phobius | 484 | 504 | 21 | - | – | |
| Phobius | 505 | 599 | 95 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi5g1v0264800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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