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LotjaGi5g1v0271600.2

Overview

Field Value
Gene ID LotjaGi5g1v0271600
Transcript ID LotjaGi5g1v0271600.2
Related isoforms 2
Lotus japonicus genome version Gifu v1.2
Description RNA-binding protein pno1; TAIR: AT3G13230.1 RNA-binding KH domain-containing protein; Swiss-Prot: sp|Q9VR89|PNO1_DROME RNA-binding protein pno1; TrEMBL-Plants: tr|I3SQ56|I3SQ56_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0271600
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr5:58529966..58530448) extracted from Lotus japonicus Gifu genome v1.2.

ATGGATCTCTACACCCCTGTCTATGAACAGATGAAAATTGACATCCGTATGAATTTGAAGGCTCGGAAAGTTGAGCTGAA GACAAGGCGTGATACACCTGATATCAGTAACCTGCAGAAATGTGCTGATTTTGTCCATGCTTTCATGCTCGGTTTTGATG TCATAGACGCCATTGCGCTTCTGCGTTTGGATGAGCTCTATATCGAGTCCTTTGAGATCAAGGATGTTAAAACACTTCGA GGCGATCACTTGTCCCGTGCTATTGGAAGATTGTCTGGTAAAGGTGGTAAAACGAAGTTCGCAATTGAGAATGCGTCCAA GACAAGAATCGTGATTGCTGACAGCAAAATCCACATTCTGGGATCTTTTGCTAACATTAAGATTGCCAGGGATTCTCTTT GTAGCCTAATCCTGGGATCACCAGCAGGAAAGGTGTACTCCAAACTAAGAGCAGTTACTTCTAGACTCGCAGAAAGATTT TGA
Download Genomic Sequence

CDS sequence (LotjaGi5g1v0271600.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGATCTCTACACCCCTGTCTATGAACAGATGAAAATTGACATCCGTATGAATTTGAAGGCTCGGAAAGTTGAGCTGAA GACAAGGCGTGATACACCTGATATCAGTAACCTGCAGAAATGTGAGCTCTATATCGAGTCCTTTGAGATCAAGGATGTTA AAACACTTCGAGGCGATCACTTGTCCCGTGCTATTGGAAGATTGTCTGGTAAAGGTGGTAAAACGAAGTTCGCAATTGAG AATGCGTCCAAGACAAGAATCGTGATTGCTGACAGCAAAATCCACATTCTGGGATCTTTTGCTAACATTAAGATTGCCAG GGATTCTCTTTGTAGCCTAATCCTGGGATCACCAGCAGGAAAGGTGTACTCCAAACTAAGAGCAGTTACTTCTAGACTCG CAGAAAGATTTTGA
Download CDS Sequence

Protein sequence (LotjaGi5g1v0271600.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MDLYTPVYEQMKIDIRMNLKARKVELKTRRDTPDISNLQKCELYIESFEIKDVKTLRGDHLSRAIGRLSGKGGKTKFAIE NASKTRIVIADSKIHILGSFANIKIARDSLCSLILGSPAGKVYSKLRAVTSRLAERF
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR12826
1 42 42 2.5E-72 –
PANTHER
PTHR12826:SF13
1 42 42 2.5E-72
IPR039912
PANTHER
PTHR12826
42 137 96 2.5E-72 –
SMART
SM00322
42 115 74 3.2E-5
IPR004087
Gene3D
G3DSA:3.30.1370.10
42 137 96 4.2E-25
IPR036612
SUPERFAMILY
SSF54791
42 136 95 2.58E-20
IPR036612
PANTHER
PTHR12826:SF13
42 137 96 2.5E-72
IPR039912
CDD
cd00105
62 108 47 0.00218682 –
Pfam
PF00013
63 110 48 1.2E-4
IPR004088

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003676
Molecular function Nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
Subterm of
GO:0003723
Molecular function RNA binding Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi5g1v0271600.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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