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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0273300 |
| Transcript ID | LotjaGi5g1v0273300.2 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Synaptotagmin-2; TAIR: AT5G04220.2 Calcium-dependent lipid-binding (CaLB domain) family protein; Swiss-Prot: sp|Q7XA06|SYT3_ARATH Synaptotagmin-3; TrEMBL-Plants: tr|I1LD00|I1LD00_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0273300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:58674117..58679326) extracted from Lotus japonicus Gifu genome v1.2.
ATGAAATGCACACACACACAATTTGAATTAGAAACAGAAAGACATGACAAGGACCCATTGTTGTATGCACAAAGCATGTA AAGCCAATTTGAAGTGAAAAACAGAGAGATGAAGGTGTCTCTGTTTTGGCGCTTTCATTAAGACTCACACACACTCATTT ATTTCTTCTACAGTTTCCATCGCCATCCTCAGTTTCCTAGAAAACTGTCAACCCATTTTCTTCACCCTTTCATCTCTACT CTTCGATCATCACCACCACCACCAGCATTTTCCACTTCTTCCTCTGTTCTGGTTCACCGAAAATGGGGTTTGTTGGAAGT TTCTTGGGGATTTTTGGTTTTGCCATTGGAATACCCTTTGGCCTCTTGCTGGGGTTCTTTCTCTTTGTTTATTCAGAGAC CAAACAAGTGAAGGTTACTGTTCTTGCATGATTCACCTACATGCATTCAATAAAATTCAATGCAGATGCATTTTTTTATA AACAGTGTTGTGGGAACTGAATTTTTGTTTTTTCTTTTTGGGATGAAGAATTTAAGACCCCATTTTCATTTTGGAATCTG GGTATGCTTCAAAATTTGATCTTTTGTTTGTTTGTTGCAGGACCCAGTTGTGAGACCTATTAGTGAATTAGGCCCAATTG CTCTGCAAGAACTTCTACCTGAGATTCCTCTGTGGGTGAAGACACCTGATTATGAAAGAGTAAGTTTTTTCTTGTATGTT CTGAGCTTTTTGATGATGTTACTGTGTTTGATAAATTGCATGGTTCTTTCTTCAGGTTGATTGGATGAACAAGTTTTTAT TGGATATGTGGCCTTACTTAGAAAAGGTATTTCAGTAATTCATGAGGGTGAATTCATCCTCTTATTGGATGATTCTTGAC TGGTGTTTGATTTTGTGGCACAGGCAATTTGTGGGATGATTAGAACCACAGCACAACCAATATTTGCTGAATACATTGGA AAGTACCAGATCAAAGCAATTGAGTTTGACAAGTTAAGCCTTGGTACTCTTCCTCCTACTATCTGTGGTAAGTCTTTCCC CAAATTGTTTATTTTTGCAAATATTTTGTTCAAACTTCTTCCCAGAAGATAGAAATGGTTTACCATTTAATCTGAAATTC CATTGGCCTAGAAGAATTTTGAATTAGAATACCTAAGGATGGTTTTCACCCAGGAGGTTTGACAATGATTAAGGATATAT CTTATGTGTTAAATATGAATCCTTGGAAGTTTGAATTGGAGTACAAATGCAGTTTAGCTCAGAACATTAAGTGCACTTGA ATAAATTTTGGTGAGGTAACCAGCACTATAGAGATGTTGTTTTCTGTTTGTCCACGTCAAAGGTCGATTTACTTTATAAA GTTCAGTCACACAACACATTTGCGGCCTTTATTATCTGATAGGTTACGAGGTGTAAAGGTTTAGTGTTAAAGTCCACATT GTAATTCTGCAGGTATTAAAGTTTTAGAAACCAATGAAAAGGAATTGGTCATGGAGCAAGTTATCAAATGGGCTGGCAAT CCAAACATAGTGTTGGCTTTGTATGTGTCATCTTTGAAGATCACGGTTCAGGTCAGATAAGCCTTGAGTTACAATCCTAA ATAATTCATGTTTTTCTAGTTCCTTCAAGATTGATGCTATCCTTCCAGGAATTCATTTTTATTCTTCTCAGTTGACAGAC TTACAAATATTTGCAACACCGCGGGTAACTTTAAGACCTTTAGTGCCTACATTTCCATGTTTTGCAAAGACTGTGGTATC TTTGATGGAGAAGGTAAAGGAAGTGTCGTATTCAATTCTAATTTCTCTTCATGTCTTTTCTAATATAGTCAGAACAAATT CATTATTTTGTGATAATTTTGTTCAACGCTCAGCCTCATGTGGATTTTGGGATGGCAATATCAGGAGCGGACATCATGTC GATACCTGGTCTTTATAGATTTATTCAGGTACTTACATTTATTATTATTAGTTTTTTTGCTGATAATGGTTGCTATGGTT GAACTGTCTACCAAGTACCAACTTGACTAAACAAAAGCTAACTTACACTTTTTTTATGTTTTACTTTTTCTGGATTAAAA TTTTCACAGTAGTAAACTTTATTGTGAATAAAAACTTCTGATTTTCTCCCCTATACATCATGGAATTCAGTTAATCACTA CAAATACACAAGGGTAGTTTTAGGATTTTTGTGGATTTAGATTATGCAACTTGTTACTCCTATGCTCATTTATTTTTCAG TTCTTTGATGGACTGTTAGATTGTTACTTGTTAGTTCCCTTGCAAATTCTATAATGTTATTTTGTTGTTATTTTATTGTT ATCATCTTTTTTTCCTGCAATTTTAATTGGCATGGTGTTTGACAATTGAGCTGGACTTCCACTTTAACTACTTCTGCTGC TTACAGAAAACAATAAAAAAACAAGTTGCAAGCCTCTATCTCTGGCCTCAAACCCTGGAAATTCCCATTCTTGATGAATC AACGTAAGTTTGAATGAATGATAGTGTTTATGTGCTCACAGAAATAATTTTCAAGGTCTAAAAGCTTTGTAAATTTTTAT CCTGCTATTTTACAAACATATATGCGACCTGGTCCTTATCTAAAGAAGTTGACATAATTGGCATACTGTTGCTAGATTAC ACAAAGCTTCAACCAGACATCTTACTAGAATTATGTTACTATTAAACATATGATCTTATTGTTACAGCATTTGATGAGAA AAAATACTGCAAGTCGCCTAAGTTCACATAAACTTTCTGTTTTCTTCTATGATGAAAATGAGCTTCTGAAATTGGTTCTT GATACTTTTGTTTACATCTCTATAGGGTGGCGATAAAGAAGCCTGTGGGAATACTACATGTGAATGTGGTTAGGGCACTT AAGCTTTTGAAGATGGATTTGCTGGGAACTTCTGATCCTTATGTGAAACTAAGCATGACTGGGGAAAAACTTCCAGCAAA GAAAACCACTGTCAAGAGGAAAAATTTGAATCCTGTGTGGAATGAGAAGTTCAAGCTTATTGTGAAGGACCCTCAGTCTC AAGTTCTCCAATTACAAGTCTATGACTGGGACAAGGTTTTCCCTATCTTTTACTTGTTTGAATTTTGGTTAAAAAACAAG TAATGTAACACAATAATCTTAGCTGTAGCATTCACCTTTCATTTATGTTTGAAAGGAAGGCCCTTCATTTTGGCTTCAAA TATTGTGTGGCAACCGATGAAACCTAAATGACCATTTATTTTCAAGCTTTGTTAGAAATGTGAAAACTCATATTTTAACT TATTTATGTGTACACAAAACAAATATAGCTAATTGGTGGCACTCACCTCTGAGATAGACCTTTCAAACAGGAGCTTAGGA AACCTATCTCAAGGAGTGATTTATCTTTTCTCTTTTTGATGATGTTAATTTACTTCACTACTAGAGATACTTAGTTACTT TTAACTTTCAAGGAACAGCTGTATTTTCTGTGTGTAGCTTTGTTTTGTAAAAATCTTTTCAAGCAGGAACTTGGGAAATC AATCTTGTCTTTCATTTCTGTCCATTCAATTCATTGATGATATGCAATTTTAGTCTGTAGAAGAAGCCAATCACTTGGGT TCAAGTCCTCGAAACAACCTCTTGTGTAAAAAACAGGGTAAGGCTGCGTACAGTAGACCGTGTGGTCGGACCTTTCCCCG GGCCCACACATTGCGGAGCTTTAATGCACCGGGCTGCCCTTTTTTAGATGAAGCCAACCCCTTCCATTCAGTTACTAGAT AATTGGTTTGCATTTGTAATGGGATTTATTTTCTTAGCTGGTTATGACTTTTTTCAATGATATTTCTTCACAGGTTGGTG GACATGACAAGCTGGGAATGCAACTAGTCCCTCTTAAGCTTCTTAAACCCTATGAGAATAAAGAGTTTACACTTGATTTA CTCAAGGACACAAATATCAATGAAACTCCAAATAAGAAGCCAAGAGGGAAAATTGTGGTGGACTTGACTTTTGTTCCTTT CAGAGAAGATAGTATCAAATTTGGTGGATCTTCAGATAGATATGAGAGGAAGGATAGTGGAGTTGATAGTGTATCCGATG ACGAAGTCCAAGACGGTGCTGGTTTGCTTTCAGTTGTTATACAGGAGGCTGACGAGGTTGAAGGAGAACATCACAACAAC CCATATGCAGTGCTTACCTTTAGAGGCGAAAAGAAAAGGACAAAGGTAAACTTTCACCTTCAGTATAATTGTGCTACACT TTTCAGCTTTCTATTATGCACATCATGTTATTTCAGCTTTCTGTTATGCACATCATATTATCATTTGTATACACAATTGA TTCAGGCAAGTTATTACATTTACTTAAGGAATTTGTTCCAATTTTTTTTTTCCAGATGATGAGGAAAACCCGTCACCCGC GTTGGAATGAAGAGTTTCAATTCATGCTAGAGGAGCCTCCTCTACATGAGAAAATACACATAGAGATTATGAGCAAGAGG AAGAGCTTTAGTTTTCTATCAAAGGTGCCATTCCATTTTTCTGTTAATTGCAACTTTAAATAGATTGATTGAAAATTTGT TTTTCAGAAAATTTAGCGCACTGTTTGATCCATATTGGTGTTGATGATGTGCAATGGCCTATTTGGATAACATCATGTTT GGACCAACTTCTCCTTAGAATAAATTCTGACACCTAGAAGCTATTAACAGACGCTTTTCCTCATAATTGATTTTAGCTTC AGAAATAATTGTAGATTGATTTTTAAACATGCACCAAGTCATCTTGTGTTAATCACTGATATTGATATGAGATTTTCTAT GATATGCAGGAATCCCTGGGGCATGTGGAGATTAACCTGAGTGATGTAGTGCACAATGGTCGCATTAATGATAAATACCA TCTAATAAATTCAAGAAATGGAGTGATGCATGTTGAGTTGCGATGGAAGGTAGTTTGACATTGACAAACTAAAACCTTTA ATTTGTGGTATTATTTTGTTACTCTACTACCTTAGTTGACAATTAAGCTCATTATTTTTTACAATGTATCTAAAGAGTGT AGGCACATCGCAACTGGATCGGATCTTCTTGATCACTGGGAAAAAAATCTGAACCGTCCAAAATATGTTAAAAAATATAG GAAAAATTGAGACCGTCCGATTTCTGCTTAACAAAACAAAACACATAATTTACAAAACGATTTACGTAATTACAAAAAAT GTTATGGTAG
CDS sequence (LotjaGi5g1v0273300.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGGTTTGTTGGAAGTTTCTTGGGGATTTTTGGTTTTGCCATTGGAATACCCTTTGGCCTCTTGCTGGGGTTCTTTCT CTTTGTTTATTCAGAGACCAAACAAGTGAAGGACCCAGTTGTGAGACCTATTAGTGAATTAGGCCCAATTGCTCTGCAAG AACTTCTACCTGAGATTCCTCTGTGGGTGAAGACACCTGATTATGAAAGAGTTGATTGGATGAACAAGTTTTTATTGGAT ATGTGGCCTTACTTAGAAAAGGCAATTTGTGGGATGATTAGAACCACAGCACAACCAATATTTGCTGAATACATTGGAAA GTACCAGATCAAAGCAATTGAGTTTGACAAGTTAAGCCTTGGTACTCTTCCTCCTACTATCTGTGGTATTAAAGTTTTAG AAACCAATGAAAAGGAATTGGTCATGGAGCAAGTTATCAAATGGGCTGGCAATCCAAACATAGTGTTGGCTTTGTATGTG TCATCTTTGAAGATCACGGTTCAGTTGACAGACTTACAAATATTTGCAACACCGCGGGTAACTTTAAGACCTTTAGTGCC TACATTTCCATGTTTTGCAAAGACTGTGGTATCTTTGATGGAGAAGCCTCATGTGGATTTTGGGATGGCAATATCAGGAG CGGACATCATGTCGATACCTGGTCTTTATAGATTTATTCAGAAAACAATAAAAAAACAAGTTGCAAGCCTCTATCTCTGG CCTCAAACCCTGGAAATTCCCATTCTTGATGAATCAACGGTGGCGATAAAGAAGCCTGTGGGAATACTACATGTGAATGT GGTTAGGGCACTTAAGCTTTTGAAGATGGATTTGCTGGGAACTTCTGATCCTTATGTGAAACTAAGCATGACTGGGGAAA AACTTCCAGCAAAGAAAACCACTGTCAAGAGGAAAAATTTGAATCCTGTGTGGAATGAGAAGTTCAAGCTTATTGTGAAG GACCCTCAGTCTCAAGTTCTCCAATTACAAGTCTATGACTGGGACAAGGTTGGTGGACATGACAAGCTGGGAATGCAACT AGTCCCTCTTAAGCTTCTTAAACCCTATGAGAATAAAGAGTTTACACTTGATTTACTCAAGGACACAAATATCAATGAAA CTCCAAATAAGAAGCCAAGAGGGAAAATTGTGGTGGACTTGACTTTTGTTCCTTTCAGAGAAGATAGTATCAAATTTGGT GGATCTTCAGATAGATATGAGAGGAAGGATAGTGGAGTTGATAGTGTATCCGATGACGAAGTCCAAGACGGTGCTGGTTT GCTTTCAGTTGTTATACAGGAGGCTGACGAGGTTGAAGGAGAACATCACAACAACCCATATGCAGTGCTTACCTTTAGAG GCGAAAAGAAAAGGACAAAGATGATGAGGAAAACCCGTCACCCGCGTTGGAATGAAGAGTTTCAATTCATGCTAGAGGAG CCTCCTCTACATGAGAAAATACACATAGAGATTATGAGCAAGAGGAAGAGCTTTAGTTTTCTATCAAAGGAATCCCTGGG GCATGTGGAGATTAACCTGAGTGATGTAGTGCACAATGGTCGCATTAATGATAAATACCATCTAATAAATTCAAGAAATG GAGTGATGCATGTTGAGTTGCGATGGAAGGTAGTTTGA
Protein sequence (LotjaGi5g1v0273300.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGFVGSFLGIFGFAIGIPFGLLLGFFLFVYSETKQVKDPVVRPISELGPIALQELLPEIPLWVKTPDYERVDWMNKFLLD MWPYLEKAICGMIRTTAQPIFAEYIGKYQIKAIEFDKLSLGTLPPTICGIKVLETNEKELVMEQVIKWAGNPNIVLALYV SSLKITVQLTDLQIFATPRVTLRPLVPTFPCFAKTVVSLMEKPHVDFGMAISGADIMSIPGLYRFIQKTIKKQVASLYLW PQTLEIPILDESTVAIKKPVGILHVNVVRALKLLKMDLLGTSDPYVKLSMTGEKLPAKKTTVKRKNLNPVWNEKFKLIVK DPQSQVLQLQVYDWDKVGGHDKLGMQLVPLKLLKPYENKEFTLDLLKDTNINETPNKKPRGKIVVDLTFVPFREDSIKFG GSSDRYERKDSGVDSVSDDEVQDGAGLLSVVIQEADEVEGEHHNNPYAVLTFRGEKKRTKMMRKTRHPRWNEEFQFMLEE PPLHEKIHIEIMSKRKSFSFLSKESLGHVEINLSDVVHNGRINDKYHLINSRNGVMHVELRWKVV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 544 | 544 | 0.0 | – | |
| PANTHER | 1 | 544 | 544 | 0.0 | – | |
| Phobius | 1 | 6 | 6 | - | – | |
| TMHMM | 7 | 29 | 23 | - | – | |
| Phobius | 7 | 30 | 24 | - | – | |
| Phobius | 31 | 545 | 515 | - | – | |
| ProSiteProfiles | 67 | 249 | 183 | 25.199 | ||
| Pfam | 67 | 248 | 182 | 2.6E-15 | ||
| Gene3D | 257 | 416 | 160 | 2.1E-34 | ||
| SUPERFAMILY | 258 | 392 | 135 | 6.7E-32 | – | |
| Pfam | 261 | 359 | 99 | 4.7E-23 | ||
| SMART | 262 | 362 | 101 | 3.0E-19 | ||
| ProSiteProfiles | 263 | 347 | 85 | 17.042 | ||
| CDD | 263 | 365 | 103 | 1.85997E-26 | – | |
| PRINTS | 278 | 290 | 13 | 1.4E-7 | ||
| PRINTS | 305 | 318 | 14 | 1.4E-7 | ||
| PRINTS | 327 | 335 | 9 | 1.4E-7 | ||
| SUPERFAMILY | 426 | 542 | 117 | 9.23E-20 | – | |
| Pfam | 427 | 528 | 102 | 1.5E-14 | ||
| Gene3D | 427 | 545 | 119 | 1.9E-25 | ||
| SMART | 427 | 525 | 99 | 6.1E-16 | ||
| ProSiteProfiles | 428 | 510 | 83 | 10.604 | ||
| CDD | 428 | 529 | 102 | 2.42653E-13 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Lipid binding | Interacting selectively and non-covalently with a lipid. |
Expression pattern of LotjaGi5g1v0273300.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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