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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0275700 |
| Transcript ID | LotjaGi5g1v0275700.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transmembrane protein 115; TAIR: AT3G07950.1 rhomboid protein-like protein; Swiss-Prot: sp|Q8LF05|RBL19_ARATH Rhomboid-like protein 19; TrEMBL-Plants: tr|G7I9J5|G7I9J5_MEDTR Transmembrane protein, putative; Found in the gene: LotjaGi5g1v0275700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:58997771..59000746) extracted from Lotus japonicus Gifu genome v1.2.
CTGATTATTATTGGGAGATTTTCATAACTTTTTTTTATAAATGAATAGTATAACTTTGGTGTGTATAGTACATAAGTCTA CGTAGCAACAATAACCAAGGTGGATGATGAGATTCAGATCTTGCTGAACTCAGCTCAATTTCACCATCTTCTTCTTCTTC TTCTTCTTCTTCAAATTCGAAGCTCATTCTGAATCGTCCATGTCCATGCCCATGAGCAGCACGCTACCGCCCTCACAGAC AAACTCAGAGGTTGGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCGTTTATCGAATCCAATGTTGGTGGTGACTTTGAAT GTGGGTTGTGCAGGGCGCAAGGGTGTTTTCCGGCGGCTTCACGCGCCTCTGCAAGGGTCTTTCCGTTCTTCTTCTCGCCC TTCACCTTCTTCTTCACATTTTCCCTTCCGCTATCACCTACCTCGCTCTCATTCCCGCAAGGTATCTCTCTCTTTGAATT GCATGTTTGATTGATACCCACTTCACCATTCTTCATTTTTTCCCTCATTTTGCATTTGCAGGACTATCCCTTTTGCCTGG AACCTCATCACTGCTGGTTACCTTGAACAATCTCTACATGGGGTATGCAAACACGGTTTACTTCATTCACTGCATTTCCT GAATATGTCTGTTATGAATTCTGATGTTTTAGGCCCTGTTTGGAAGAGCTTATTTGATAGCATAAGCGCTTGTGCAAGTG TTTGGAAGAGCTTATGCTACCATAAGCTGTTTTGAGCTTATTTTCATAAGCTACTCAGGATAGCTTATGAAAAAGAACTT ATGCTTATATATATAGCTTATTTTCATTAAGCTGTTTTTCCAAACGGGGCCTTAATCATTTCAGAAATTCATTCCCAATT AATGTTACTGTGCCTTTTATAGGTTGTGATCAGCATTATCTGTCTCCTCTTCATTGGCAAGCTGCTTGAACCAGTTTGGG GTCCTAGGGAATTTATCAAGTTCATCTTTGTTGTTAACATCTTAACTTGTGTCTGCATTTTCATCACTGCTATTGCCTTA TACTACATTACAAGTCTGGAGACTTACCTGTAAGTACTTCTAATCCAGTTACCATCTTAGATGAATTGGTTTTCTTCATG TTTATTAGATTTCCCACTTTCCTAGACCTTGCATTGAAGCTTGATTTCTTGGTCTCTTTTTGCTTCTACATTAGAAAAAC ATTGTTGGTCATGTATTCGTTAAGCTATGTGTTTTATTGATTAAGCTTGGCTAGCTTAATTTTCTAAGCTAAAAGTTAAG GTATTGAAAATTTGAACTGGAACATTTTTTAGATCCTTTAGGTCTTGATGTTGTTTTTATTCTGTGCTATCTATTGAATC TTGTTAGGTGTTGAGTGTGCCTTCTGCACCTTGATCTATTTTTTTTTTTTAATCTTTATACTCTTGCGATGTTCTAGTTA TAAACCACTTTCTGGCTTTGATGGAGTTATTTCTGGGTTCTTGGTTGGCATCAAGCAAATTATACCAGATCAAGAACTTC CTTTCCTTAAGTTAAAAATGAAGGTTTGATATTCTTAATCCATTTCCTGAACTTCTTGTTCATTAGTTTACAGCAACAAT AGGTTAATGAGAATGCCTAAATGTGGTATATCTTCCATTTCTGTTCAGTGGTTACCATCTATTGCTTTATTGTGTTCTGT TGCCATGAGCTTCTGGATAGATGAGGCAATAGCACATCTTCCAACAGTGATATTTGGTACATATATGAGCTGGATTTACC TCAGATACTGGCAGAGGAAGCCAGAAACAAAGCTCAAGGGTGATCCCAATGAGGATTTTGCATTCTCTACCTTTTTCCCA GAGTTTTTAAGGTAAGATACGGTTTTGGTTAGCCTGTCATAAATGATGAATAAGAAGCTCCTATTCCTATAGTCTTTCTA AGCAACTTTTATTTTTTCATGGCTGCCTTGCAGACCAGTAATAGACCCTGTTGCGTCAATATTTCACCGAATGCTCTGTG GAAGATCTGATGCCTCTAATGATTCCGAAGGCTACACTTTGGGAGGTGAACCTATGCTAGGTTCTGACCCCATTGAGGCA TCTAGGAGAAGGTAATTTCACATTGCTTTTTTATTTTATCTCACCTAGCTGAATATATTGTAAATTAAAAGTTACTGCTA TGGAGCAATTCATAAGGAAAAAAATCAAACAGGCAAACAATAGAAGTTAATGGCAAACATGATGAATTTGTTTTTGTAAA TAAACGACATAAATTATCCGAATCAATTTTGGCACCCAGAAGCCGATCACATAAGCTTCTTCCCAGAATTGATTTTGGTT TTAGAATCAATTTATAGAAGGATTTCCAAACATGCTATAAGCATTGTGACTGGTTTTTCTTGTAGGGAAAGAGGTGCCCG AGCACTGGAAGAAAGGTTGGCTGCTGAGAGGTTGGCTACTTCACACAATGCAGGGGAATTGCAAACAGATGCTGCAGGAA ATGTATAATTCCTTAGCTTTTGTACATTCACATATGTTAGACCAATATATGAAACTATCATGAGTGACATTTTCACAGAT GGTAAAGTAATGAGAAAGTTTTTACTGCCTTTAAGGCAGATTTTAATGTGCATTTTGTCTTTTGGGATGTGATCCTTGTG AAACAAGTTTCTCTTACGTCAGAAAATTGAACCATATGTGCACACCCAAAGAATCATGCAACTACATGAAAGATTTATTA AGAACTAGCTGTCCTTTTTTGTTTTGTTCTAGCTGTCCTCAGTTGTAATCCATAAATAAGTTGTTTGTTCTTTTTTTTTT TACTTTCTTAAGAAAAGTTACTGGGAAAGTAAATATGGTTGCGAATGCTCTTGCTAAATATGGATTATCCTCAAATGGTC ACACACATTTACAAATTTTTATCTCCCTATTATAGTTTTTTGAGAGTGACTGCCACCACCTCCTATAGAAGTGGTTTAGT TTTTGTCTGTTTTCTC
CDS sequence (LotjaGi5g1v0275700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCCATGCCCATGAGCAGCACGCTACCGCCCTCACAGACAAACTCAGAGGGCGCAAGGGTGTTTTCCGGCGGCTTCAC GCGCCTCTGCAAGGGTCTTTCCGTTCTTCTTCTCGCCCTTCACCTTCTTCTTCACATTTTCCCTTCCGCTATCACCTACC TCGCTCTCATTCCCGCAAGGACTATCCCTTTTGCCTGGAACCTCATCACTGCTGGTTACCTTGAACAATCTCTACATGGG GTTGTGATCAGCATTATCTGTCTCCTCTTCATTGGCAAGCTGCTTGAACCAGTTTGGGGTCCTAGGGAATTTATCAAGTT CATCTTTGTTGTTAACATCTTAACTTGTGTCTGCATTTTCATCACTGCTATTGCCTTATACTACATTACAAGTCTGGAGA CTTACCTTTATAAACCACTTTCTGGCTTTGATGGAGTTATTTCTGGGTTCTTGGTTGGCATCAAGCAAATTATACCAGAT CAAGAACTTCCTTTCCTTAAGTTAAAAATGAAGTGGTTACCATCTATTGCTTTATTGTGTTCTGTTGCCATGAGCTTCTG GATAGATGAGGCAATAGCACATCTTCCAACAGTGATATTTGGTACATATATGAGCTGGATTTACCTCAGATACTGGCAGA GGAAGCCAGAAACAAAGCTCAAGGGTGATCCCAATGAGGATTTTGCATTCTCTACCTTTTTCCCAGAGTTTTTAAGACCA GTAATAGACCCTGTTGCGTCAATATTTCACCGAATGCTCTGTGGAAGATCTGATGCCTCTAATGATTCCGAAGGCTACAC TTTGGGAGGTGAACCTATGCTAGGTTCTGACCCCATTGAGGCATCTAGGAGAAGGGAAAGAGGTGCCCGAGCACTGGAAG AAAGGTTGGCTGCTGAGAGGTTGGCTACTTCACACAATGCAGGGGAATTGCAAACAGATGCTGCAGGAAATGTATAA
Protein sequence (LotjaGi5g1v0275700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSMPMSSTLPPSQTNSEGARVFSGGFTRLCKGLSVLLLALHLLLHIFPSAITYLALIPARTIPFAWNLITAGYLEQSLHG VVISIICLLFIGKLLEPVWGPREFIKFIFVVNILTCVCIFITAIALYYITSLETYLYKPLSGFDGVISGFLVGIKQIIPD QELPFLKLKMKWLPSIALLCSVAMSFWIDEAIAHLPTVIFGTYMSWIYLRYWQRKPETKLKGDPNEDFAFSTFFPEFLRP VIDPVASIFHRMLCGRSDASNDSEGYTLGGEPMLGSDPIEASRRRERGARALEERLAAERLATSHNAGELQTDAAGNV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 34 | 34 | - | – | |
| PANTHER | 15 | 318 | 304 | 1.6E-177 | ||
| PANTHER | 15 | 318 | 304 | 1.6E-177 | – | |
| SUPERFAMILY | 29 | 216 | 188 | 6.28E-14 | – | |
| Phobius | 35 | 57 | 23 | - | – | |
| TMHMM | 35 | 57 | 23 | - | – | |
| SMART | 58 | 156 | 99 | 1.2E-41 | – | |
| Pfam | 58 | 156 | 99 | 5.2E-29 | ||
| Phobius | 58 | 76 | 19 | - | – | |
| TMHMM | 72 | 94 | 23 | - | – | |
| Phobius | 77 | 95 | 19 | - | – | |
| Phobius | 96 | 106 | 11 | - | – | |
| TMHMM | 107 | 129 | 23 | - | – | |
| Phobius | 107 | 129 | 23 | - | – | |
| Phobius | 130 | 134 | 5 | - | – | |
| Phobius | 135 | 158 | 24 | - | – | |
| Phobius | 159 | 169 | 11 | - | – | |
| Phobius | 170 | 188 | 19 | - | – | |
| Phobius | 189 | 193 | 5 | - | – | |
| TMHMM | 192 | 209 | 18 | - | – | |
| Phobius | 194 | 212 | 19 | - | – | |
| Phobius | 213 | 318 | 106 | - | – | |
| MobiDBLite | 265 | 288 | 24 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Retrograde vesicle-mediated transport, Golgi to ER | The directed movement of substances from the Golgi back to the endoplasmic reticulum, mediated by vesicles bearing specific protein coats such as COPI or COG. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. |
Expression pattern of LotjaGi5g1v0275700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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