Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0275700 |
| Transcript ID | LotjaGi5g1v0275700.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transmembrane protein 115; TAIR: AT3G07950.1 rhomboid protein-like protein; Swiss-Prot: sp|Q8LF05|RBL19_ARATH Rhomboid-like protein 19; TrEMBL-Plants: tr|G7I9J5|G7I9J5_MEDTR Transmembrane protein, putative; Found in the gene: LotjaGi5g1v0275700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:58997868..59000510) extracted from Lotus japonicus Gifu genome v1.2.
AGGTGGATGATGAGATTCAGATCTTGCTGAACTCAGCTCAATTTCACCATCTTCTTCTTCTTCTTCTTCTTCTTCAAATT CGAAGCTCATTCTGAATCGTCCATGTCCATGCCCATGAGCAGCACGCTACCGCCCTCACAGACAAACTCAGAGGTTGGTC TCTCTCTCTCTCTCTCTCTCTCTCTCTCGTTTATCGAATCCAATGTTGGTGGTGACTTTGAATGTGGGTTGTGCAGGGCG CAAGGGTGTTTTCCGGCGGCTTCACGCGCCTCTGCAAGGGTCTTTCCGTTCTTCTTCTCGCCCTTCACCTTCTTCTTCAC ATTTTCCCTTCCGCTATCACCTACCTCGCTCTCATTCCCGCAAGGTATCTCTCTCTTTGAATTGCATGTTTGATTGATAC CCACTTCACCATTCTTCATTTTTTCCCTCATTTTGCATTTGCAGGACTATCCCTTTTGCCTGGAACCTCATCACTGCTGG TTACCTTGAACAATCTCTACATGGGGTATGCAAACACGGTTTACTTCATTCACTGCATTTCCTGAATATGTCTGTTATGA ATTCTGATGTTTTAGGCCCTGTTTGGAAGAGCTTATTTGATAGCATAAGCGCTTGTGCAAGTGTTTGGAAGAGCTTATGC TACCATAAGCTGTTTTGAGCTTATTTTCATAAGCTACTCAGGATAGCTTATGAAAAAGAACTTATGCTTATATATATAGC TTATTTTCATTAAGCTGTTTTTCCAAACGGGGCCTTAATCATTTCAGAAATTCATTCCCAATTAATGTTACTGTGCCTTT TATAGGTTGTGATCAGCATTATCTGTCTCCTCTTCATTGGCAAGCTGCTTGAACCAGTTTGGGGTCCTAGGGAATTTATC AAGTTCATCTTTGTTGTTAACATCTTAACTTGTGTCTGCATTTTCATCACTGCTATTGCCTTATACTACATTACAAGTCT GGAGACTTACCTGTAAGTACTTCTAATCCAGTTACCATCTTAGATGAATTGGTTTTCTTCATGTTTATTAGATTTCCCAC TTTCCTAGACCTTGCATTGAAGCTTGATTTCTTGGTCTCTTTTTGCTTCTACATTAGAAAAACATTGTTGGTCATGTATT CGTTAAGCTATGTGTTTTATTGATTAAGCTTGGCTAGCTTAATTTTCTAAGCTAAAAGTTAAGGTATTGAAAATTTGAAC TGGAACATTTTTTAGATCCTTTAGGTCTTGATGTTGTTTTTATTCTGTGCTATCTATTGAATCTTGTTAGGTGTTGAGTG TGCCTTCTGCACCTTGATCTATTTTTTTTTTTTAATCTTTATACTCTTGCGATGTTCTAGTTATAAACCACTTTCTGGCT TTGATGGAGTTATTTCTGGGTTCTTGGTTGGCATCAAGCAAATTATACCAGATCAAGAACTTCCTTTCCTTAAGTTAAAA ATGAAGGTTTGATATTCTTAATCCATTTCCTGAACTTCTTGTTCATTAGTTTACAGCAACAATAGGTTAATGAGAATGCC TAAATGTGGTATATCTTCCATTTCTGTTCAGTGGTTACCATCTATTGCTTTATTGTGTTCTGTTGCCATGAGCTTCTGGA TAGATGAGGCAATAGCACATCTTCCAACAGTGATATTTGGTACATATATGAGCTGGATTTACCTCAGATACTGGCAGAGG AAGCCAGAAACAAAGCTCAAGGGTGATCCCAATGAGGATTTTGCATTCTCTACCTTTTTCCCAGAGTTTTTAAGGTAAGA TACGGTTTTGGTTAGCCTGTCATAAATGATGAATAAGAAGCTCCTATTCCTATAGTCTTTCTAAGCAACTTTTATTTTTT CATGGCTGCCTTGCAGACCAGTAATAGACCCTGTTGCGTCAATATTTCACCGAATGCTCTGTGGAAGATCTGATGCCTCT AATGATTCCGAAGGCTACACTTTGGGAGGTGAACCTATGCTAGGTTCTGACCCCATTGAGGCATCTAGGAGAAGGTAATT TCACATTGCTTTTTTATTTTATCTCACCTAGCTGAATATATTGTAAATTAAAAGTTACTGCTATGGAGCAATTCATAAGG AAAAAAATCAAACAGGCAAACAATAGAAGTTAATGGCAAACATGATGAATTTGTTTTTGTAAATAAACGACATAAATTAT CCGAATCAATTTTGGCACCCAGAAGCCGATCACATAAGCTTCTTCCCAGAATTGATTTTGGTTTTAGAATCAATTTATAG AAGGATTTCCAAACATGCTATAAGCATTGTGACTGGTTTTTCTTGTAGGGAAAGAGGTGCCCGAGCACTGGAAGAAAGGT TGGCTGCTGAGAGGTTGGCTACTTCACACAATGCAGGGGAATTGCAAACAGATGCTGCAGGAAATGTATAATTCCTTAGC TTTTGTACATTCACATATGTTAGACCAATATATGAAACTATCATGAGTGACATTTTCACAGATGGTAAAGTAATGAGAAA GTTTTTACTGCCTTTAAGGCAGATTTTAATGTGCATTTTGTCTTTTGGGATGTGATCCTTGTGAAACAAGTTTCTCTTAC GTCAGAAAATTGAACCATATGTGCACACCCAAAGAATCATGCAACTACATGAAAGATTTATTAAGAACTAGCTGTCCTTT TTT
CDS sequence (LotjaGi5g1v0275700.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTGGGTTGTGCAGGGCGCAAGGGTGTTTTCCGGCGGCTTCACGCGCCTCTGCAAGGGTCTTTCCGTTCTTCTTCTCGC CCTTCACCTTCTTCTTCACATTTTCCCTTCCGCTATCACCTACCTCGCTCTCATTCCCGCAAGGACTATCCCTTTTGCCT GGAACCTCATCACTGCTGGTTACCTTGAACAATCTCTACATGGGGTTGTGATCAGCATTATCTGTCTCCTCTTCATTGGC AAGCTGCTTGAACCAGTTTGGGGTCCTAGGGAATTTATCAAGTTCATCTTTGTTGTTAACATCTTAACTTGTGTCTGCAT TTTCATCACTGCTATTGCCTTATACTACATTACAAGTCTGGAGACTTACCTTTATAAACCACTTTCTGGCTTTGATGGAG TTATTTCTGGGTTCTTGGTTGGCATCAAGCAAATTATACCAGATCAAGAACTTCCTTTCCTTAAGTTAAAAATGAAGTGG TTACCATCTATTGCTTTATTGTGTTCTGTTGCCATGAGCTTCTGGATAGATGAGGCAATAGCACATCTTCCAACAGTGAT ATTTGGTACATATATGAGCTGGATTTACCTCAGATACTGGCAGAGGAAGCCAGAAACAAAGCTCAAGGGTGATCCCAATG AGGATTTTGCATTCTCTACCTTTTTCCCAGAGTTTTTAAGACCAGTAATAGACCCTGTTGCGTCAATATTTCACCGAATG CTCTGTGGAAGATCTGATGCCTCTAATGATTCCGAAGGCTACACTTTGGGAGGTGAACCTATGCTAGGTTCTGACCCCAT TGAGGCATCTAGGAGAAGGGAAAGAGGTGCCCGAGCACTGGAAGAAAGGTTGGCTGCTGAGAGGTTGGCTACTTCACACA ATGCAGGGGAATTGCAAACAGATGCTGCAGGAAATGTATAA
Protein sequence (LotjaGi5g1v0275700.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MWVVQGARVFSGGFTRLCKGLSVLLLALHLLLHIFPSAITYLALIPARTIPFAWNLITAGYLEQSLHGVVISIICLLFIG KLLEPVWGPREFIKFIFVVNILTCVCIFITAIALYYITSLETYLYKPLSGFDGVISGFLVGIKQIIPDQELPFLKLKMKW LPSIALLCSVAMSFWIDEAIAHLPTVIFGTYMSWIYLRYWQRKPETKLKGDPNEDFAFSTFFPEFLRPVIDPVASIFHRM LCGRSDASNDSEGYTLGGEPMLGSDPIEASRRRERGARALEERLAAERLATSHNAGELQTDAAGNV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 20 | 20 | - | – | |
| PANTHER | 9 | 306 | 298 | 7.0E-177 | ||
| PANTHER | 9 | 306 | 298 | 7.0E-177 | – | |
| SUPERFAMILY | 17 | 204 | 188 | 5.62E-14 | – | |
| TMHMM | 21 | 43 | 23 | - | – | |
| Phobius | 21 | 45 | 25 | - | – | |
| SMART | 46 | 144 | 99 | 1.2E-41 | – | |
| Pfam | 46 | 144 | 99 | 4.8E-29 | ||
| Phobius | 46 | 64 | 19 | - | – | |
| Phobius | 65 | 83 | 19 | - | – | |
| TMHMM | 66 | 88 | 23 | - | – | |
| Phobius | 84 | 94 | 11 | - | – | |
| TMHMM | 95 | 117 | 23 | - | – | |
| Phobius | 95 | 117 | 23 | - | – | |
| Phobius | 118 | 122 | 5 | - | – | |
| Phobius | 123 | 146 | 24 | - | – | |
| Phobius | 147 | 157 | 11 | - | – | |
| Phobius | 158 | 176 | 19 | - | – | |
| Phobius | 177 | 181 | 5 | - | – | |
| TMHMM | 180 | 197 | 18 | - | – | |
| Phobius | 182 | 200 | 19 | - | – | |
| Phobius | 201 | 306 | 106 | - | – | |
| MobiDBLite | 253 | 276 | 24 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Retrograde vesicle-mediated transport, Golgi to ER | The directed movement of substances from the Golgi back to the endoplasmic reticulum, mediated by vesicles bearing specific protein coats such as COPI or COG. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. |
Expression pattern of LotjaGi5g1v0275700.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…