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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0276400 |
| Transcript ID | LotjaGi5g1v0276400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pseudouridine synthase; TAIR: AT3G52260.2 Pseudouridine synthase family protein; Swiss-Prot: sp|Q5M721|PUS5_ARATH RNA pseudouridine synthase 5; TrEMBL-Plants: tr|I1NHE4|I1NHE4_SOYBN Pseudouridine synthase; Found in the gene: LotjaGi5g1v0276400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:59089732..59097019) extracted from Lotus japonicus Gifu genome v1.2.
AATAAAAGAGTTCTTAAATATGCTCTTAATAATTATATTTATCAAATATTAACAGTAAATTTAACACTCAAGATTAGAGC TTGTGACTCAGAATGGCGAGCACTAAGGAATTCGGCGTTCCATGGCCGGAGTTCAACGACGGCCTCTCCTACCACGACGT CATTCGTCCCTCCGATGATGGTTCACCACTCTCTCTCTCCCTCTCTCTTTTCTTCTTATTTGCAACTCAATTTGATGACA TTTAGTGTAACAATTTCAGGGTTGACAGTGATTGAGTTCTATTCCACCAAGTACAAGAGTTCAGCTCCCTTACAAGGGTA AGTTAAGCACTCTCTCTACTACCCCATTTTCATTTTTATCAAAAAATTGAAACTTTTCTCCTTTATATATGTTCACTAAT GAAGGAAAGTGCAATATTTGAACTGGATAGAGTTTTTTTTTTCTCAACTTGAATTTGCTTTATTGAGAACTTGTAGAAAG ATTTTCACTTTAGTAAGAAAGGTTATTGATTGAAATTGTCTAAACACTGAGGGAAAATGAAGTAACTAGTAAGTGCATTG AGCTGGAAGTTAATATAATGGGAGTTTAAATTTGGTGTTTCCAACTATTAGTTAGAGACCATGGCTATTGTACCGAGGGT TCGATACAAAAGAAAAATGGATACCATTATTACAACTATATTTGCTACGGATTCCCTAGTACTAATTTATTTCTGTAATA AAAAAATTAGGGGAAAAGTAAGCAAGGAATGAAAATTTTCCAATACTTATGAACTGAAATTATGAATTATTGGTCAGTGG TTTCTTCCAGTGCATCTTTCCTGGGATCATGGAATTGTTTTACTGCCTCTTTTGTATGTCTCTTGTAGTCTTTTTAAGTG GGGTTGATTTCTTGAACTTTTTGAGGCATTTGAGAACTATTTTGAGCTATTGGCACGCATTTCTCTTTTGACAGTTGGTT GCAGCGTATAGAAAATGAGCAGGTTTGATCATCAATGCATCTGAAATAGTTGACTTAATGAAATGTATCATCGGGATGGC TGATTGTCGTATTAATAATATGTCATCTACAGATATCAGTTGGTGGAAGAGTTGTTACTGATCCGAACACAGTCCTCAGG TTCTTTAATAGAAACTTGTCTTTATAATACGGATGATTGCATGGTTTTGTTCCATTAAATAATTTTCTGACTTCTTCATA TTAGAGTTGGTTCAAAGCTAGTCTATCATAGACTTCCATGGAAAGAACCTGATGCACCACACATGATTAAAGTCTTGTAT GAAGATGATGACATGGTTAGTTTACTTTATATCACTGTGCATACCTCTATTTGTTTCCGAACTGTTTTTGTCTGATCAAT CATATTAAATTCGAATTTTGAACTTAATTTTATTGCTAATAGTGTTTTGGAATACTAATACATAATTGACACTATTTACT GTAATAAATTTTAAGAAGCAAGGAAACAGAAGATAGAAACATGTCTCAGCCAAATTTATATAAAATTCTAGTTTCTGACT GAATGCTCTCAATGAGTGTTTTACATGAGTAGTTAGTACCTATGGATTAAGTTATCCACAAATGTTGCCGCTCCTTGCCA TAATATATTGTTGCAAGTACTAGGAAATTAGAATGTTTTCAATATTTGATCTCTTAATTAGGATGCTGATTATCAATTCA GATTGCTCTAAATAAACCTTCTGGCCTGCAAGTTCTGCCCGGAGGTCTCTTCCAGAAAAGGACAGTTTTAACACAGCTTC AATGGGAAGCCAACAATAAGAGTACCCTTGAAGCACGGAAAACTCATCCTGCTCCAGTACATCGCCTAGGGAGGGGAACT TCAGGTTATACAGAATATCTCTATTGAAATTTGAAAGTGCTTAATTCTATCTGTTGCTTAGTTTTCTTTGGTAATGTTGT ATGCATGAACCGAGGTAAGTTTTAAAACTCGATGAGATGAAGGTAATTTACTTTAAAATAATGCAAAACTGTTATCATCT GTGAAAGATTAAAGCCCTTAAGTTGATTGTTAATTTCAAATGGTAGTGTTATTTAGATAGTTATTATATTACTACCTGAG ATGGTATGTGAGTATGACTGGATCCTTTTATTTTAATAACCTTCCAACATTATAAATAACTAAACTAACTAGCTGAGGAC ACTCTCTAATGCGTTCACGATTGATTGATTGTATCACAGGAATATTATTATGTGCAAAGACAAAACTAGCCAGAGCTCAT CTTGCTTCTTATTTTGCTGATGTAACATCTCACGTGGGAGTAAAAAGGTATATAAAGAAAATACTTCAACAGAAGATAGG AAAAAAGTAGTTTTAAGTTTTAAAGTTGAAGTTAAAATTCCATGCTCAATGACCTGGTTTGACTCATTGTATTCTATTAT TTACGGAAGTAGGGACACAGACCAGGGACTTGGGAAGATTGCAAAGATATATCGGGCGCTTGTGAGTGGTATAATTGGTA ATGATAAGGTAATGTACTGACAGTTTTCCCGCTTTTAATATAGGTATCTTGAATGAGGAGTGGTTTTTTACCACATCCAT CCCCAAATAAAGGACGACAGAAATTCTATAAGAGATCAAGAAAACATGGATATTTCTTATTTCATAGACCTATTCATAAG GAATAATGACAAGAAAGTTGCACTGATTTCTCTCTGTATTTAGTTATACTACAAGAGACCCTTTTCTTCTATAATTACTA CTGTCTAGTGTATTTTGAAAATGAAGAAAAGTAGGTGTGTCATGGATGTTTTGGGGCATTGTGTGATGTGCCATGTAAAC TGAATTCATTGTTTGCGTGTTTTCCAAGAGTAAGAGTGACCATGTTCCATGTTGATTCTTCTTATTGTCTTTGCAATGAT TTTTTTTGTTTGGAAATAGGGGCTTTTGTTCTTTTTCCCATCACCTCTGCCCAATCCTTACTATTTTCTTTTGGAAAGTT TTGGTTTCCCTATCATATCATCTATCTACATTCCATAATTTTAACTAGATATGATTACAACTAAGTTCCCACTATGTATT GTTTGTTACTTTCTTCTGGTTCATTTGTAAGTTTATTCCGGATGGTTATCAAAATGGTATTAACTACTTTAGTGAGCATG GTTTGTTTATCGCTCTATGAATAGAGGTCATGCCTATATCATATGTTTAATATCAAGGTGAAGGGAAGTTTATGCTTTTT AGAATATTTTGATGCTCTGTTTATGTAATTTGCAACAACTTTGCTATATTTATTTGACCTTGCTTATATTCACAGGTGAC CATTAATCAACCAATTGGAATGGAAAAATACCCTGGTGTTGCTAAAGGATTATATGTTGCTTCCCAATCAGGTTATTTTT TTATAATTTATTTTCAGATTGTCAATTGATCTACCTCCTTACGAAAATCTCAGTCATGTCATGTCTATTTATTTCCATTC ATCTTTTACTATTATGTTTCCTTTTCATCATAAAACTTCCCTCTATAATTTCCTTTATTGGCCACTCGTGCATAATTGTT TTCATTGATCCAGGAAAACCAGCACTCAGTGTAGTGGACATTCTGGAAAGAAACATACAAGAAAACAGCACATTGGTCCA GGTTGCCAAATTTAATATTCAAAACTGCAAGTTTCTTCTTACGAGTCCTCAACCATGTAAACTTTGGATTATAAGAAAAC ACTAAATGTGATAGGGTAAAAGAAAGTAACCCAACTATTTACTACCTACCACTATTTATCAATAAAAATAAAAGGGCAAA CCTGATGCTTTAAAGCTCTTGCCATGCGCGAGGTCCAGGGAGGGGCTGGGTCCACTTTGTGGATCTAATGTAGGTAGTCT TACCTTGCTTTTTTTTTGCAAGAGACGGATTCCACGGCTCGAGTCTTGAACCTGAGACCTCAAAGTCACATGGCAGCAAC CTTACCGTTGCGCCGAGGCTCACCCTCTTATTTATCAATATAACATTTAATGAAAAATAATAGTCAATTTATTCATACAA AACATCATATGAACCCCTGCTTCAATTGAAAATTGTGCAGCACTGCTCTGTTCTCAGATATTGTTCAATATTCATTGATG TCCTATCAAACTGCAGTCTAGGAACAGTCATTCCTAAATTATTCACTTTTGTTTCAACCTTTCTGCTAACCAAAGTTTTG CTTGTATTCATTTCTCATTTGTTGCTATTAAGAAACGATAGAAATAGAAAAGGCTACCATAAATTATATATCCAGACTCT ATAGTGACATTTATCTTCTCAATTTCTTTGGTTAAGGGTTGTCTTTGATTCAATCCCCTCCTCATGAATAATTTCTTGGC CCTATTTTATTTACTTCTTAATTTTTTCCTTAGCTAAAAAGGGACCTAGTGGTATAAGAGTTGGTGGCTGTTTTCAAAAA ACGCCATTAAGTGAAGAAATGAACAGATATATGGTGGTTTGGGTAAATAGCAAGTCTACATATGCATCTTGGGCAATGCA AAGTGAAAATGGTTTGCAAAATTTTGGATTCTCGTGGTTATGGTAGCCTTATTACTTCCTCTGATTGGCTTGTTTAACAG GTTAAGATTCAGTCTGGACGACCTCATCAAATCCGCATTCATCTTTCTTTCATAGGGCATCCTTTGTTAGGTAAATATTT AGTGTTATGTTATTTACTCCTTTATGGTGCTACATATGAAGAGAAATATTAACATTTCTTATATCACGGACAAAACAATA AAGTTGTAAAACTACATGTTTACCAATAACGATTCGTGTATATTAAGCCTCTAAACTTCTATTACGTTTAAAATATATTT TTCACCCCTCAAATTTGAAGTTTTAATTTTATTCTTGAAATATTTCGTTTTTTCTTCTTATTTTATCTTTAGCAAAGTCT ATACCAATCTAATGGTGTTACTAATGGAATACAGAATGATGATTCATTAGCGTTTCAATTTGGCAATTAGCCTTTGATTT GGGGAATCCGTCAGATGGGTATTTTATCCTTTGTTTAGTTAGTGTCTAGGGATATGATTACCCTAACTTGTTGCGTATTT GGTTTCTTTGTCTTATAAAGGTGTTTCTTTCAAAACATAGGTTGCACTGACACTCATTAAGGATTGCACATTTTCTTTTC TAAACAAGATGAGAAAATAACTAAACAGTATATTTCCCTGCATCTTTTGACATCTTTGAGGCTCACACATATTAATCAGT CTTTGAAAGCATGCACAGTCCTATTCCTATGCAACATGCATGATGAGGGCACTCACAATATCTTCTTGTGAGTCTTCCGT GAATTCATGTGTGATATTCACTTCACCTGAACTGGTAAGAATTATGAATATCATGCCCATAATCCATTTATCTTTTCCTC TATTTTTTATTTGCAGGTGATCCTCTTTATGCTGTTGGTGGTCAGCCTAAATGCATGGATTGTGATTTTATGGATGAGAG TTTTGCTGAAGATGGGTAAGTGCTTGTATTTATATTTCTTAAATTTGAGTTCGACCTATCGCAAAAAAGCAAGCTTATGG ATGAGAAATGTCATATTTTTTGTAAGGAATACTTTGTCCATATCTCTAGTAAATTTGGGATCTCTATACACACCCTTCAC ACTCAGAGGGGGGGACATCTGGAGCGTGAAGTTTGTAGGTCTGAACATCTGCGGCCCAAATAGAGAGATCTAGGATAGAC TAACTCTTAAATTTACTATCTCAAATTTAGATTAGAACTAACTCTACCCCAAGAGATAGCTTGTGAGGACTGTCCTGCAC TTTTTGAGGATTATTTTGCCCATTTCTTTAGTCAACATGGGACCTAACAATATTTTACAATTATACTTCCATTCATTTAT CACCATGTTCCTCTCTAAAGTTACGGATTTATTAAATTCTGTTATGCAATGATCGTTCCAGTATCTTCCCAAATTAACAC TAACTGAATGAACTTAGAGAGAATGCCAGCAAATTTGTAAGTAGTATGATCTGGCAACCAACATGTCTAATGACATTGCA GTTAGTTACTTTCATTCTTTATTTTTTTATGGCCACTAGTTTTTGCGTAACGCTTTTGGGGTGCTCGGGTGATATTTCAT AGTTCATACAGTATCACTTATTTACTTGTAAATTTCTATCCTGACTTGTGAGTTAAGTTTCACATTAAACTTTTCTATTG ATATGTTCAATACTTGCATTTCTTTGACTTATTTTGACTGGTGTTTAATGTCAAAATATGATAGTTTAGGGCAGTAATGC TCCGTATATACAAAGTTGGATTATCCGTTTACTCCTCTAGTTCTTTTGGCGGATCAATATCAATGAATTATGTCTGAAAA AAATAATATATGCATTTGCGATTTGATCCAAGTTTCACTTTACTGCTCATTGTATAGGGGTTATCAGAGGCCCACCAAAC CGGTTCCTGGAGACTGTGGGTATTATTTGCATGCACATAAATTGATTCTCTCCCATCCAATAACTAATGAGGTAAAGTAG CAATATTAGTATCGAATATTAATCTTATAATAGTTGTTATCCACTCGATCTTAGACTCAAAAGTTAACTATTTACAATGT CCATTTGGTTATATCATTTGAGAATGAATGCACATGGCTCGCTTTATGGTATTCAATTTGATGCCCTTCGTCAGATCAAT TTAGTGGTACTGCATCCTTAAAAACATTGTGATTTCTTCATGCGTGAATGCTTTTATTATACTTGTGCGAATGCCGAATA GTAAGTTTCCGAGTTATGCAAGCTTATCACTGATTTAGCTATGATACATTCCTAGTTTCAGTTTCCAAATTGTAACATTT TCATGTGTGCTTGTAGATTATTGATATCATTGCACCCCTTCCTTCCATCCTCATGACAGCAGAAGAGGCTAAGGAGATTG CTGTGGCACAGCAGACAACTGCTTAAGAAGTTGTTGAAACTGGTTCAATGCTGTCAAATAGTCGTTATAGCATAGTGCTT TGAGGGCTCACCGCTTTTGCCACTTTGAGGGCTTGAAATAGCGGATCTTTGGCTTTCCGCTATTTTCCGCAATCCGCAAT TAACAAGACTGAGCTGGTTGGTTAACTGTGTAGAAAGTGAAAGATAATATCCTTTTGTTTTGTACTAGTGCATTAACTCG TGCAGAGTGAAAGAATTGTGAGACTGAAAAATATGACATGTTCACATACATTTGTTTTTGTACCGTTCAAATATATTGAA TATTATGGAATATATTCTTATAAACTTTTTTTTTGATAAACTATATTCTTTACTTTTGTACAAACATAATTTTTTTTTAA GTATGACT
CDS sequence (LotjaGi5g1v0276400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGAGCACTAAGGAATTCGGCGTTCCATGGCCGGAGTTCAACGACGGCCTCTCCTACCACGACGTCATTCGTCCCTC CGATGATGGGTTGACAGTGATTGAGTTCTATTCCACCAAGTACAAGAGTTCAGCTCCCTTACAAGGTTGGTTGCAGCGTA TAGAAAATGAGCAGATATCAGTTGGTGGAAGAGTTGTTACTGATCCGAACACAGTCCTCAGAGTTGGTTCAAAGCTAGTC TATCATAGACTTCCATGGAAAGAACCTGATGCACCACACATGATTAAAGTCTTGTATGAAGATGATGACATGATTGCTCT AAATAAACCTTCTGGCCTGCAAGTTCTGCCCGGAGGTCTCTTCCAGAAAAGGACAGTTTTAACACAGCTTCAATGGGAAG CCAACAATAAGAGTACCCTTGAAGCACGGAAAACTCATCCTGCTCCAGTACATCGCCTAGGGAGGGGAACTTCAGGAATA TTATTATGTGCAAAGACAAAACTAGCCAGAGCTCATCTTGCTTCTTATTTTGCTGATGTAACATCTCACGTGGGAGTAAA AAGGGACACAGACCAGGGACTTGGGAAGATTGCAAAGATATATCGGGCGCTTGTGAGTGGTATAATTGGTAATGATAAGG TGACCATTAATCAACCAATTGGAATGGAAAAATACCCTGGTGTTGCTAAAGGATTATATGTTGCTTCCCAATCAGGAAAA CCAGCACTCAGTGTAGTGGACATTCTGGAAAGAAACATACAAGAAAACAGCACATTGGTCCAGGTTAAGATTCAGTCTGG ACGACCTCATCAAATCCGCATTCATCTTTCTTTCATAGGGCATCCTTTGTTAGGTGATCCTCTTTATGCTGTTGGTGGTC AGCCTAAATGCATGGATTGTGATTTTATGGATGAGAGTTTTGCTGAAGATGGGGGTTATCAGAGGCCCACCAAACCGGTT CCTGGAGACTGTGGGTATTATTTGCATGCACATAAATTGATTCTCTCCCATCCAATAACTAATGAGATTATTGATATCAT TGCACCCCTTCCTTCCATCCTCATGACAGCAGAAGAGGCTAAGGAGATTGCTGTGGCACAGCAGACAACTGCTTAA
Protein sequence (LotjaGi5g1v0276400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASTKEFGVPWPEFNDGLSYHDVIRPSDDGLTVIEFYSTKYKSSAPLQGWLQRIENEQISVGGRVVTDPNTVLRVGSKLV YHRLPWKEPDAPHMIKVLYEDDDMIALNKPSGLQVLPGGLFQKRTVLTQLQWEANNKSTLEARKTHPAPVHRLGRGTSGI LLCAKTKLARAHLASYFADVTSHVGVKRDTDQGLGKIAKIYRALVSGIIGNDKVTINQPIGMEKYPGVAKGLYVASQSGK PALSVVDILERNIQENSTLVQVKIQSGRPHQIRIHLSFIGHPLLGDPLYAVGGQPKCMDCDFMDESFAEDGGYQRPTKPV PGDCGYYLHAHKLILSHPITNEIIDIIAPLPSILMTAEEAKEIAVAQQTTA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 4 | 367 | 364 | 3.1E-157 | – | |
| PANTHER | 4 | 367 | 364 | 3.1E-157 | – | |
| CDD | 52 | 108 | 57 | 0.00664146 | ||
| Gene3D | 86 | 351 | 266 | 1.1E-53 | – | |
| SUPERFAMILY | 95 | 359 | 265 | 6.58E-50 | ||
| Pfam | 104 | 277 | 174 | 4.9E-22 | ||
| CDD | 104 | 335 | 232 | 6.03989E-49 | ||
| ProSitePatterns | 150 | 164 | 15 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Pseudouridine synthesis | The intramolecular conversion of uridine to pseudouridine within an RNA molecule. This posttranscriptional base modification occurs in tRNA, rRNA, and snRNAs. | ||
| Molecular function | RNA binding | Interacting selectively and non-covalently with an RNA molecule or a portion thereof. | ||
| Biological process | RNA modification | The covalent alteration of one or more nucleotides within an RNA molecule to produce an RNA molecule with a sequence that differs from that coded genetically. | ||
| Molecular function | Pseudouridine synthase activity | Catalysis of the reaction: RNA uridine = RNA pseudouridine. Conversion of uridine in an RNA molecule to pseudouridine by rotation of the C1'-N-1 glycosidic bond of uridine in RNA to a C1'-C5. |
Expression pattern of LotjaGi5g1v0276400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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