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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0278900 |
| Transcript ID | LotjaGi5g1v0278900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Tetratricopeptide repeat protein, tpr, putative; TAIR: AT1G22700.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|O78458|YCF37_GUITH Uncharacterized protein ycf37; TrEMBL-Plants: tr|I3SQZ7|I3SQZ7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0278900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:59426858..59431679) extracted from Lotus japonicus Gifu genome v1.2.
ATCCTGTCGGAGAAGGATGATAAGCTCTGCGACTTGAACAGGAAACAGCTCAAGAAGCAGAACCTGAAGAATGGGGGGTT CAATCTTCACTCACTCCCTCGTTCTCTCACACTCTTCTTCTCCTTCTCTCTCCACTCTCTTCTCATCCAAACACCCCATA ATTGATTCTACTCCTTCTACCTTTCTCTTCAACCGATTCCATTGCAAACTCACTTCTTCATGGCCTTCAGCTCCTCGCAG TTACTCCTGCTCTGTAAAGTAACCCCTCTTCTTAATTTTCCAACAATTTTACTTCTTGATTGACAAAGATTAAAGCTTGA GTGTTATAGATTCATGGGGTGCCTTGTTTTGGCTTATGCAAATTTAAGTCCTGTTAGCCATTAATGTTGCTTAGGAGAGT AGAGTTCTCAATTGGGTAGCTGTTTTTTGTGATATAGTTTGTTTTGATCAAGTTTCAAGCTGTGTGTGATTTGTGGAGGA GGGTGTATAGGGAAATGAGTTGCATGACTTATAGTGTTTCACATGTTCATATTGAAGGCATTCAGTTTTGTTACTCTCTT AGAGGCTCTTGTTTCTTTAGTGGTTCAGTATGATGCATGCATCGCATGGATGATTGTTAACCTGGAGCACCATTTACAGA AAGATGAAAGCCTTGGGAATTCAGCTAACAGGATCAGCTTCACATGGATACCATCTTGATGCAATGAAGAGCAGGATTGT TCTTCAGGTTCTTTTGCTTTCTCATTCTTTACACCAAATTAAGCATTTTAGAATAAATATTTTGTTCCATATTTCCACCT AATAAAATCAGGTCAAAGACTTGGTTTTGTCTAATTATTCATTCAAATTATCATGATCAGTTTAATCTTCAACCGTTTGC TATATACACGCTCTATGTTCGTACCTTAAGTTTTGGATACTAATTGTTTTTTTCTTCCATCATGGACGAAGCCAGATGTT TCGGAGGGCAATGCCAATGGACACCCTTATCTCAAAACAATCTGAGGGTAATTATCTGTTCTTGTTTTATAATTTTCTCA TTCGTAATATTTTTGCATACCAGGAGTGAGTTGGTGTCACTTTGTAATGGTAAAAAGTGTATTTTTTATTCATTTCAAGT TTTCCTGCATGCTATTGGTTTTTAGATGCTGTCATTCTGATGATGCTTTGTTATCATATGATCAAACTTTGATAATCTCC AAAGCATTGTATCTATATATAATTGTCAAGAAATACTATGCCAATGACTATTATGCCCAGATTAAAAGAAAACTTAGGAA ACAATTATGAGGTTTGTTGGGATGAACTACAGGATAAATTATCATGTCAGCCTTATACATTTACATTTACCAATATTTCT AGGTTAGTTACATTATTGTATATAATGTTAGTGATATAAGTTACTAAACTTTAACTTAGTTCCTGACAATCTGAACAACT CCTTCCAAAGCTGACTGATAAAGATGCAGTCACAATTGGAAACTATTAACTATTAAGCTATGAAAGCCATGGAGGCATAT CATATCATCATTTCTTTTACAAAATCAGCTGCTACTTCCTTGGCTGAATAGCTCAGTGGAATAAAATGAACTGATTTTGT CAGCCTATCCACTATCACCATATAAATCCCTCCCATTCCCAATCGTGATTGGGAATTGGAAGTGGTTGAAGCTGTCCAAT AGGGTTTAGAGCCTTTTATTTATTTGTGACACCTCATAGCCCTAAACATATTTGTCAATGTCACGTCTCATGCTTTCCAA TGAAATGCAATAGCTATCCTTTTCTATTTTCTGGTTATTCCCAAATGGCCTCCCTAAAGAGAAAGTGAAACTCAGCTAAG ATGAGGGGATTTCTAGCAGACTCTGGTAACCTGTCTTAAAACCACAAACAGCCCTTGGAGACGACTATATGATCAAGATT TCGATTGGGATCTTCAATTTAGTCCAGAGAATAGACTTCAATAGGTTATCAATCAGTGTCTCTTCTAAAATTTTGTCAAA ATCTTGTTTATTAAGCAAAAGTATGAATTGAAACTCCATCACACATGACAGGGGTCATCCTATTTTCATTCCCTGACTTA TGTTGTATCCAAAATCAAAGCCTAGCAACTGGGAGACCCATTTCTGTTGCTCTCCATCCCGGGCCCTTTGTTCCAGCAGA AATTTCAGACTCTGTTGTTCTTTTCTGTTAAGAAAATGGTTTCCAAACAAGTATTATCTTCACTTTACCAAAACAAAAAC TACTGCAATAAACTCTCTCTTATAAACCGATTTAACTCTAAACTTTTCAGAGAAAGCTTGACTAAAAAAAGCCAAGGGTC TTCCTTGTTGCATGATGATGATACCAAATCTAAGACCAGAAGCATTAGTATCTAATCTCAATCTCAAATGGTTGATTGCA ATTTGGCATAGCCAAACTAGGCAACTCCTCCATTGCTGACTTGAGCTCTTGAGATGTTTTTTGAGCATCTTTAAGTTGTC TTTAGGGTGTAAGTTTAGTGGACTCCAGAATCAACAGTTAATATTCCTTAACTAATTCTTTGATAACTCCATGTTGTGCT TCACTTCTTTCTGTAACAGGGTTACCATTCCCAACTTTGGTTCATGATACGCTCAACACAGTAAACTCTTGCTTCGTTCC TCGGTCCCTTCATCATAACTTTGAGTGACGCTGCTGTTTTGGATAAGGTGGGATCTCCACTGGTCACCATTTCTCCATTC ACCTCCACATTAATCACCTCCTCAGAGTTTTCTTATATTGCCCCAGCTTCTCCAACTGTTAATAACCAAAACCAGATCAA CTTCTCCTATATCAAGTAGATTGAAATCCCCACACTCCCTTTAAGTTTGGTAATTGAAGCTCCACCTTCACTCACGCCCC CTATTTTTACACCCTGTGATCATCCCCCACTTCCAATGCATATTCATTGGTTACTTCAAGTTGTATTCCCAGCATCCTTA TTAAGTCACTCTATAGAAAGTTGTGAGAAGCCTCAAATCAACAATTTAGATCTCAAATGGAGAGGGATGAGGAGATAAAT TGATGGAGAGGATCCAAATTCATATGCCACGTCTCTCTCTAAACACAATCCTCTACTACCTTACTTCTATAACATTCTTC TTTTTCCTCTCAAACTTGCATGCCCTTGTTAACAGGCCCATAATCTTTTATTTTCCGATAAATGATCTATTAGATATTTC CATCAACTGTAATTGTGTTGATTTATCTAAATATTCAAATTGCTAATCAAGCAAAATCAATGAAAAATCAATGTACCTTG TTAATTGTCTGCATTGTGTTAATCTAGGTTCAAATAAATGGAAAAATATGAGCTAATTAATATTGTTTTTAAATTGCAAT ACCACTTGAGTCATTGATCTTTCTAATCTTGTCTTACTGGATTTTCAGCGAACGACTTTACAACCACTCATCTTGAAGAT TGGGGAAGGCCATCCACATGGGTTTCAGCATTCTTGTTTGGACAAACTATATCATTGATTTCTCCTGATGTTTCATATGC AAGCAGCTCTGTGAAGATAAATGAGATATATGAGGTTGGAGAATTGTTTGATTTAGGGATCCAACTAATATACTTGATAT TGTTATTGAGTTTGCTAGGGTTTGGGACTTTCTATGTGATCCGCCAAGTTCTTGTCCGGAGAGAACTTGACCTTTCTGCC AAAGAGCTGCAGGTAAGTGCCTATGCTTCTTGCTTTTGGTTCTTTATGTTAATGGTTGTTTCTCTTGAACAAGACATTAT CCTCCTTGATTCCTTGACAGATATTACACGCCCTGGTTTTACATGTCCATTATATGATTACTATTAGTTTTTTTACTTTT CTGGTTTGGCATCATAACAAAAATCAAACACAAAAGACAATTCGCTTCGAACTAGTTGTTTTATGATCCTATTTCCTTTC TCATTTTCTTATATTGTCCCAGGAACAAGTAAGAAGTGGTGATGCAAGTGCAATTGGACTTTTTGAACTTGGAGCAGTGA TGCTTCGGAGGAAATTCTACCCAGCTGCTACCAAATACTTGCTTCAAGCAATTGAGAAATGGGATGGAGAAAACCAGGAT CTTGCCCAGGTTAGATGACTTGCTTGATTGCTAATAAACCATTATTGGCCTTTTTTTTATCAAGACCTGTTACTCTGGTG ATGATTATTAGAATTCGGGTTAGGCCTAATTCTATCCCAGAGGCTAGCTCAGGGATGAGGATTGCTATACCCTATATAAG GTCTTATTTAGTCATATATCTCTAGTCAGTGTGAGACCTTAAAAATGATCATATATCCAATTCATCAACATAGGTTCACA ATGCTCTCGGTGTCAGCTATGTCCGCGATGGGAAGCTTGAGAAGGGAATTGCTCAGTTTGAGACAGCTGTGAAGATTCAA CCAGGGTATGTCACAGCATGGAACAATCTTGGTGATGCTTATGAGAGTAAAAAGGATTATAAGTCTGCTCTCAAGGCATT TGAAGAAGTTCTACAGTTCGATCCCAACAACCAGATTGCTCAGCCGAGGAGAGATGCTTTGAAGGACCTTGTTCAAATGT ACAAAGGAGCTCCTGTCAAATACAATGAGAAGAAATAAATTTCGTTGTATCAACTGACACTACTAATATTGTAGACTTGA GTACACAGTTTTGAATAACTTGATTGTTTGTTCAAAGGAAAATTGTTTTATTGATGCAGCTGAGGTAAACATTTTTACTT TGTTTCAACCAAAATTAGCAATGGTGTTTAAAACCTTATGCGTATTGCTTATGAATGGTTGAAAGATGGGTCAGTGCTAA ATTCTCAAATGGGTTAATAAGG
CDS sequence (LotjaGi5g1v0278900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGGGGTTCAATCTTCACTCACTCCCTCGTTCTCTCACACTCTTCTTCTCCTTCTCTCTCCACTCTCTTCTCATCCAA ACACCCCATAATTGATTCTACTCCTTCTACCTTTCTCTTCAACCGATTCCATTGCAAACTCACTTCTTCATGGCCTTCAG CTCCTCGCAGTTACTCCTGCTCTGTAAAAAAGATGAAAGCCTTGGGAATTCAGCTAACAGGATCAGCTTCACATGGATAC CATCTTGATGCAATGAAGAGCAGGATTGTTCTTCAGATGTTTCGGAGGGCAATGCCAATGGACACCCTTATCTCAAAACA ATCTGAGGCGAACGACTTTACAACCACTCATCTTGAAGATTGGGGAAGGCCATCCACATGGGTTTCAGCATTCTTGTTTG GACAAACTATATCATTGATTTCTCCTGATGTTTCATATGCAAGCAGCTCTGTGAAGATAAATGAGATATATGAGGTTGGA GAATTGTTTGATTTAGGGATCCAACTAATATACTTGATATTGTTATTGAGTTTGCTAGGGTTTGGGACTTTCTATGTGAT CCGCCAAGTTCTTGTCCGGAGAGAACTTGACCTTTCTGCCAAAGAGCTGCAGGAACAAGTAAGAAGTGGTGATGCAAGTG CAATTGGACTTTTTGAACTTGGAGCAGTGATGCTTCGGAGGAAATTCTACCCAGCTGCTACCAAATACTTGCTTCAAGCA ATTGAGAAATGGGATGGAGAAAACCAGGATCTTGCCCAGGTTCACAATGCTCTCGGTGTCAGCTATGTCCGCGATGGGAA GCTTGAGAAGGGAATTGCTCAGTTTGAGACAGCTGTGAAGATTCAACCAGGGTATGTCACAGCATGGAACAATCTTGGTG ATGCTTATGAGAGTAAAAAGGATTATAAGTCTGCTCTCAAGGCATTTGAAGAAGTTCTACAGTTCGATCCCAACAACCAG ATTGCTCAGCCGAGGAGAGATGCTTTGAAGGACCTTGTTCAAATGTACAAAGGAGCTCCTGTCAAATACAATGAGAAGAA ATAA
Protein sequence (LotjaGi5g1v0278900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGGSIFTHSLVLSHSSSPSLSTLFSSKHPIIDSTPSTFLFNRFHCKLTSSWPSAPRSYSCSVKKMKALGIQLTGSASHGY HLDAMKSRIVLQMFRRAMPMDTLISKQSEANDFTTTHLEDWGRPSTWVSAFLFGQTISLISPDVSYASSSVKINEIYEVG ELFDLGIQLIYLILLLSLLGFGTFYVIRQVLVRRELDLSAKELQEQVRSGDASAIGLFELGAVMLRRKFYPAATKYLLQA IEKWDGENQDLAQVHNALGVSYVRDGKLEKGIAQFETAVKIQPGYVTAWNNLGDAYESKKDYKSALKAFEEVLQFDPNNQ IAQPRRDALKDLVQMYKGAPVKYNEKK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 168 | 168 | - | – | |
| PANTHER | 110 | 343 | 234 | 5.6E-59 | – | |
| PANTHER | 110 | 343 | 234 | 5.6E-59 | – | |
| TMHMM | 165 | 187 | 23 | - | – | |
| Phobius | 169 | 187 | 19 | - | – | |
| Phobius | 188 | 347 | 160 | - | – | |
| Gene3D | 193 | 274 | 82 | 2.1E-7 | ||
| SUPERFAMILY | 212 | 323 | 112 | 6.42E-23 | ||
| ProSiteProfiles | 214 | 319 | 106 | 23.173 | ||
| SMART | 214 | 247 | 34 | 390.0 | ||
| ProSiteProfiles | 252 | 285 | 34 | 10.119 | ||
| SMART | 252 | 285 | 34 | 0.057 | ||
| Pfam | 257 | 319 | 63 | 1.8E-10 | – | |
| Gene3D | 275 | 339 | 65 | 8.5E-15 | ||
| ProSiteProfiles | 286 | 319 | 34 | 14.013 | ||
| SMART | 286 | 319 | 34 | 3.5E-8 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi5g1v0278900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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