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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0284500 |
| Transcript ID | LotjaGi5g1v0284500.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Eukaryotic translation initiation factor 3 subunit C; TAIR: AT3G56150.1 eukaryotic translation initiation factor 3C; Swiss-Prot: sp|Q9XHM1|EIF3C_MEDTR Eukaryotic translation initiation factor 3 subunit C; TrEMBL-Plants: tr|A0A0L9U9H6|A0A0L9U9H6_PHAAN Eukaryotic translation initiation factor 3 subunit C; Found in the gene: LotjaGi5g1v0284500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:60112299..60118117) extracted from Lotus japonicus Gifu genome v1.2.
ATGGCTTCGAGATTTTGGACTCAGGTCTTTGATTTCACACACATTGTTAATAATTTCTATTACTCTCTCTATATGTGATT GAAGAATATTTTGTTATTAATTTTGTTGTTGTTGTTTCTGAATTACAGGGTGGTAGTGATTCCGAGGAGGAGGAGAGTGA TCGCGATGAGGAGGTTGAAACTGTGGCGGTTGAATCCGCCGGTCAAGATGTTAGTAACAGTAACAAGTATTATGCGGAGA ATGAGGGTAACAGTGATGACTCTGATGATGATCAAAAGCGCGTTGTCAGGTCGGCCAAAGATAAGCGTTTTGAGGAGATG GCGGCCACTGTCGACCAGATGAAGAATGCTGTCAAAATTAATGACTGGGTGAGTCTGCAAGAGAGCTTTGACAAGATTAA CAAGCAGCTTGAGAAGGTCATGCGTGTCACCGGGTCTGACAAGGCTCCCAGGATTTACATCAAGGCTCTTGTGATGCTGG AGGATTTCTTGGCTGAGGCTTTGGCGAATAAGGATGCCAAGAAGAAGATGAGTAGTAGCAATGCCAAAGCCTTGAACGCT ATGAAGCAGAAGTTGAAGAAGAATAATAAGCAGTATGAGGAACTGATTACCAAGTGCAGGGAGAATCCCGAGATTGACGA GGAAAAAGAGGAAGAGGAGTCGGATGAAGAGTATGAAACTGATGATGAGATTATCGACCCCGAGCAGCTTAAGAAGCAGC CCGTGCATTCGGATTCGGAAGCCTCTCAATATGAGGATGATAAGCAAGATGATGGAGAAGGACCTTGGGACCAAAAGCTT AGCAAGAGAGACAGGCTTATGGATAGACAGTTCATGAAAGACCCTAGCGAGATCACCTGGGACACTGTTAACAAGAAGTT CAAAGAGGTTGTGGCGGCTAGAGGCAAGAAGGGTACCGGAAGGTTTGAACAGGTTGAGCAGCTCACCTTCTTGACTAAAG TTGCTAAAACACCTGCACAGAAGCTGGAAATTCTTTTCAGTGTGGTCTCTGCTCAGTTTGATGTTAAGCCAGGCCTCAAT GGGCATATGCCCATAAATGTGTGGAAGAAATGTGTACAGAATATGCTGATCATTCTGGATGTTCTAGTGCAGTACCCAAA CATAAAGGTTGATGATTCAGTGGAACCAGATGAGAATGAAACTATGAAAGGGTCTGACTATGATGGATCTATTCGAGTTT GGGGTAACTTAGTTGCCTTCTTAGAAAAAATAGATGCTGAGTTTTTCAAGAGCCTGCAATGCATAGATCCTCACACACGT GAGTATGTTGAGAGACTTAGGGATGAGCCTGTGTTTTCGGTTCTTGCTCAGAATGTCCAGGAATATCTTGAAATGACTGG CGACTTTAAAGCTGCTTCTAAGGTAGCCTTGAGGAGGGTTGAACTCATCTACTACAAACCACAAGAGGTTTATGATGCCA TGAGAAAATTGGCTGAGCTGACAGAAGATGGAGATAATGGAGGGGAGGAGTCAAAAGGTTTTGAGGAAACAAGAATTCCT ACTGCATTTGTTGCTACTCCAGAGCTTGTGGCCCGAAAACCCACATTCCCTGAGGATAGTAGGACTCTGATGGATGCATT AGTCTCACTGATATACAGATATGGAGAGGAGCGCACCAAAGCACGTGCAATGCTTTGTGATATATATCACCATGCTCTTC GTGATGAGTTCTCAATAGCCCGTGATCTACTGCTTATGAGTCACTTGCAAGATAACGTTCAGCATATGGACATCTCTACA CAGATACTTTTTAACAGAGCTATGTCACAATTAGGTCTCTGTGCTTTTCGTGTTGGACTGATTTCTGAAGCACATGGTTG CTTGTCTGAACTTTATTCTGGTGGAAGGGTGAAAGAGTTGCTTGCACAAGGCGTGTCACAAAGTCGTTATCATGAGAAGA CCCCCGAACAGGTACTATTCCCACCCCCACCCCCACCCCCCAAAAAAAAGTTTTTCTTAGCATATATGATGTCTAAATGA AAAGTCACCAAGATCTCCTGTCTGTCTGTCTGTTACTCACCCTGGCCCCTCATTGCTAGGTGTCAGTTAAGGCACTTCTG CTGCTAGGCATTTAGCGTTATTTGCATTTCCTAGGTGAACATCTCTGTTTCATATGATAATGCATTGCATTTGACAATAA AATGATATTAGTCTAGTCTATATGATAATAGCTTACGTGCAGTGGCGGATCCAGGACCCCGAGTCAGGGGGTTCAAATTT TTCAAATAAGCACATCGATAAAAATAAATTAAAAATAACTGTAATATGTTAATACATCAACATAACATACCAATACCATA ATCATAATTAACTTCAACATAAAGTGGTTGCAGGGACGGAGGCAGAAATTTCTAAAGGGGGACTAAGATCTAAATGAATA TGATTTGTGAAAATAATTCAATTCTCATCAAATAAAGAATGTGCCAAAAAAAAACATAGATATTTTAGTGATAACAAAAA ATAGTTTGAGTGCAAGAGATATTTTATATAAAAATAAGAATTATAAGATCATTAACAATTTTTCTTGGCAAACAAAACCA ACAACTATATTTGATCATTAACAATTTGAATCTGTTCTGCTAGATTATACTGCAATCTCATTCATAGCTGAGCATATTTG TTCAAATATCCATCAATGATTTACACTAAGACTTTTAGGAAAGGAAAGCATTGTGTAACCAAGTTTTGGATGTATTAATG AATTCAAATGCTGAGTTTAGACCCTCCTTGGGTTTGAAACGTTTCCTGTTAAGGCTAGCCACGCCGTGGCGAAGTTTGTA TGCTCTTCTATAACTCTTCAAAACCTTCTTCATCTCCTTCATCTTGTAACATTTGAAATTCTCTTCTCCATGTTTCCATC TGTTCATCAAAATGTCTTAGTTGTTCTGCAACAAACAGTATATTATTGTAGTTTCTTGCAGTAAAATCTCTACCAAAACT CTCTGCAACTCCTTCACATTTTATCATTTCAACCCGAAAGCCTTTACTCATGAACAATTTATCCAGCCATTGCTGTGTAA TGGCATTGATCTCTATGTCACTCTCAGCTAACCAGGCAGGCAACTCTTCCACAAAAAAAGATCCCTTCATTGTCCAGAAA GCTATATTTCACTGGTGCCTTTCATCAAACAATTGGTGTGCCCAATTTCATTATGCCCCTTTTCTGCCAATGTCAAACAT AATGAAGAGAATGATAACCTTAGCTGCAACATTATGATAATTAAAGGATATAACAAGTGGGAAGAAAACATGAATAAAAA GAGAAAACTCATTCAGGCATTTTGTCATACAGTTTACAGACACCAAAATTTCAATGATGATATGAAGAAAGAAACCTATC ATTCTTACCCATCCCCCTCCCTCACTTTCTTACCCAAAAGTTGCTCGCCACTCATTTTATGCCTCTAAATCCCAATCAAT TTGAACACTATCAATCTAATTTCTAAACCATTCAAACGATTGAAAAGAACATTGCACAAAACACAACTGTAAACCCATTA CCTTGACTCCTTGAGTGCAGATTCCCAACACTGGCAACGCAGAGCACTAAGAGTGGCCTTCTCGTGAGATACAGAGATTG AGAGGCGCGCGGCGGTGGTGGCGTGGCGTGGTGGTGGACTGGTGGCCGGTGGTGCGCCGTGCTCGACTGCTCATGCGTGT GCTTGTTGACGGCCAGACCTACACACCTAGTGAGAGAAAGACTGGGTGAGGGGCATGAGTCTGTGAGTGTGTGAGAGAGG TGTAAGTGGGGTCATGGGTGCAAATTGAAATTCTCAGGGGGTTCAAAAAAGAAACAATACAAGGGGGTAAGTAGAAATTT TTCTTTTTTCAGGGGGTTCAACTGAACCCCCTCACTGCTATGTGGGTCCGCCCCTGCTTACGTGCACTATAATCAACAAG AATAAGTAAACCCTTTACCTAATAGAAAATGGTGTAATGTGAAGAACCATTATGATCGTTTGTTAAGAGGAATTGGGCTA GCATTTGTTTGATCCATTCCCTTTGAGATGCCAATGCTCTGCTGCTCAGGACATGGGGTGGAATTTTTTCCCTCCAGTTA CTCACAGATGCTAGTATAATTTTTTTAATAGTCCAGAGTTATTAGTTATCTATTTATTGATTTAGTCTTCTAAATTCAGT TTTGAGGAAACTCCTAATATTTTAATAAGGTTGTGAGATATCAGAAGCTATCAATTTTGAAGGGAATTGAGGGAGATGCT CATGAACAGGGAACCTAATAGCTATACCATTTCTAATTTTTAGCTTGACTCTGTTGAATCAAGCTATCACCAACTAGAGA AATGTGGTTGATTCCCTTGCAAAACAGTCATTTATTGCCAGTGTTCTCATGCATCTGTGTTACAGTCATCATTTTAAATG TAGAACTATTTAAACTTTCTCTAGCTGTTGTTGCCTTCAGTGTGTTCCATTTAGTACTTGAATTTTTTTAAGGGGGGAAA ATACATCATTTGAATAGCATTCTATTTAGGCTTTTTTTTCTCTGGGGGGGCAACTGCCCCATTTCAGTTTCATCAGTACC TTATACTTTGGTGATGATATGCCTTGCTAATTTAGCATGATTTCTCTATAATTATCAGTATTTGTAAACTTGTAACCATG TTACTGTGACATTGATGTCTTCCATAGCTTGTATGATAAATGATTTGCAACTGTAAGTTATTTTAACATTTTTATATTAC ATGTTTCCTTCTCAGTCAATTTTAAAGAATTCCTTTTGAATTGTGAGAATCACATTTGACGTCACAGCTAACTCTTTTTA ATCCTCTTTCAGGAAAGGTTGGAAAGAAGACGTCAAATGCCATATCATATGCATATAAATCTTGAGCTTCTGGAGGCAGT TCATCTTATATCTGCTATGCTGCTAGAAGTTCCCAATATAGCAGCCAATGTTCATGATGCAAAGCGCAGGGTCATCAGTA AGACATTTCGTCGCTTGCTTGAGGTCAATGATAAACAAACATTTGTTGGTCCACCTGAGAATGTAAGAGATCACGTTATG GCTGCCACAAGGGTTCTTAGTAAAGGAGACTTCCTCAAGGCTTTTGAAATTATAGTGTCTCTTGATGTATGGAAATTTGT GAAAAACCGGGACACCGTGCTCGAAATGCTGAAGGACAAAATCAAGGAGGAGGCACTTAGGACATATTTGTTTACCTTTG CCTCATCGTATGATTCTTTGAGTGTGGACCAACTCACAAAACTTTTTGATCTCTCTGTTCCTAGAATTCATAGCATTGTC AGTAAGATGATGAGCAATGAGGAGCTTCATGCAAGCTGGAACCAGCCAACTCGGTGTATTGTTTTCCAAAACGTTGAGCA CTCTAGGCTGCAGGCGTTGACATTCCAATTGGTAGAGAAGTTATCTATCCTTGCAGAGAGTAATGAAAGAGCTGCAGAGG CAAGGATTGGTGGTGGTGGATTGGATCTGCCTCAGAGGCGGAGAGATGGCCAGGACTATGCTGCTGCTGCAGCTGGTGGT GGCGGTGGAACAGCAGGTGGTAGGTGGCAAGATTTGTCCCTTTCTCAGCCAAGGCAAGGTGGTGGACGCACAGGATATGG TAGTGGTGGTGGAAGGCCAATGGCATTCAGTCAGGCAGCTGGTAGTGGCTATTCTAGGGATCGAACGGGACGGGGAACTG GCGGTGGCTATCAGAGTGCATATAGCGGCGGTTCAGGGAGGGCTCATCATGGGGGTTCAACATTGAGGGGGCACCAGGGC GATGTATCTACTCGCATGGTTAGCCTTAAGGGAGTTCGTGCTTAAAGAATTTTATTTGA
CDS sequence (LotjaGi5g1v0284500.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTTCGAGATTTTGGACTCAGGGTGGTAGTGATTCCGAGGAGGAGGAGAGTGATCGCGATGAGGAGGTTGAAACTGT GGCGGTTGAATCCGCCGGTCAAGATGTTAGTAACAGTAACAAGTATTATGCGGAGAATGAGGGTAACAGTGATGACTCTG ATGATGATCAAAAGCGCGTTGTCAGGTCGGCCAAAGATAAGCGTTTTGAGGAGATGGCGGCCACTGTCGACCAGATGAAG AATGCTGTCAAAATTAATGACTGGGTGAGTCTGCAAGAGAGCTTTGACAAGATTAACAAGCAGCTTGAGAAGGTCATGCG TGTCACCGGGTCTGACAAGGCTCCCAGGATTTACATCAAGGCTCTTGTGATGCTGGAGGATTTCTTGGCTGAGGCTTTGG CGAATAAGGATGCCAAGAAGAAGATGAGTAGTAGCAATGCCAAAGCCTTGAACGCTATGAAGCAGAAGTTGAAGAAGAAT AATAAGCAGTATGAGGAACTGATTACCAAGTGCAGGGAGAATCCCGAGATTGACGAGGAAAAAGAGGAAGAGGAGTCGGA TGAAGAGTATGAAACTGATGATGAGATTATCGACCCCGAGCAGCTTAAGAAGCAGCCCGTGCATTCGGATTCGGAAGCCT CTCAATATGAGGATGATAAGCAAGATGATGGAGAAGGACCTTGGGACCAAAAGCTTAGCAAGAGAGACAGGCTTATGGAT AGACAGTTCATGAAAGACCCTAGCGAGATCACCTGGGACACTGTTAACAAGAAGTTCAAAGAGGTTGTGGCGGCTAGAGG CAAGAAGGGTACCGGAAGGTTTGAACAGGTTGAGCAGCTCACCTTCTTGACTAAAGTTGCTAAAACACCTGCACAGAAGC TGGAAATTCTTTTCAGTGTGGTCTCTGCTCAGTTTGATGTTAAGCCAGGCCTCAATGGGCATATGCCCATAAATGTGTGG AAGAAATGTGTACAGAATATGCTGATCATTCTGGATGTTCTAGTGCAGTACCCAAACATAAAGGTTGATGATTCAGTGGA ACCAGATGAGAATGAAACTATGAAAGGGTCTGACTATGATGGATCTATTCGAGTTTGGGGTAACTTAGTTGCCTTCTTAG AAAAAATAGATGCTGAGTTTTTCAAGAGCCTGCAATGCATAGATCCTCACACACGTGAGTATGTTGAGAGACTTAGGGAT GAGCCTGTGTTTTCGGTTCTTGCTCAGAATGTCCAGGAATATCTTGAAATGACTGGCGACTTTAAAGCTGCTTCTAAGGT AGCCTTGAGGAGGGTTGAACTCATCTACTACAAACCACAAGAGGTTTATGATGCCATGAGAAAATTGGCTGAGCTGACAG AAGATGGAGATAATGGAGGGGAGGAGTCAAAAGGTTTTGAGGAAACAAGAATTCCTACTGCATTTGTTGCTACTCCAGAG CTTGTGGCCCGAAAACCCACATTCCCTGAGGATAGTAGGACTCTGATGGATGCATTAGTCTCACTGATATACAGATATGG AGAGGAGCGCACCAAAGCACGTGCAATGCTTTGTGATATATATCACCATGCTCTTCGTGATGAGTTCTCAATAGCCCGTG ATCTACTGCTTATGAGTCACTTGCAAGATAACGTTCAGCATATGGACATCTCTACACAGATACTTTTTAACAGAGCTATG TCACAATTAGGTCTCTGTGCTTTTCGTGTTGGACTGATTTCTGAAGCACATGGTTGCTTGTCTGAACTTTATTCTGGTGG AAGGGTGAAAGAGTTGCTTGCACAAGGCGTGTCACAAAGTCGTTATCATGAGAAGACCCCCGAACAGGAAAGGTTGGAAA GAAGACGTCAAATGCCATATCATATGCATATAAATCTTGAGCTTCTGGAGGCAGTTCATCTTATATCTGCTATGCTGCTA GAAGTTCCCAATATAGCAGCCAATGTTCATGATGCAAAGCGCAGGGTCATCAGTAAGACATTTCGTCGCTTGCTTGAGGT CAATGATAAACAAACATTTGTTGGTCCACCTGAGAATGTAAGAGATCACGTTATGGCTGCCACAAGGGTTCTTAGTAAAG GAGACTTCCTCAAGGCTTTTGAAATTATAGTGTCTCTTGATGTATGGAAATTTGTGAAAAACCGGGACACCGTGCTCGAA ATGCTGAAGGACAAAATCAAGGAGGAGGCACTTAGGACATATTTGTTTACCTTTGCCTCATCGTATGATTCTTTGAGTGT GGACCAACTCACAAAACTTTTTGATCTCTCTGTTCCTAGAATTCATAGCATTGTCAGTAAGATGATGAGCAATGAGGAGC TTCATGCAAGCTGGAACCAGCCAACTCGGTGTATTGTTTTCCAAAACGTTGAGCACTCTAGGCTGCAGGCGTTGACATTC CAATTGGTAGAGAAGTTATCTATCCTTGCAGAGAGTAATGAAAGAGCTGCAGAGGCAAGGATTGGTGGTGGTGGATTGGA TCTGCCTCAGAGGCGGAGAGATGGCCAGGACTATGCTGCTGCTGCAGCTGGTGGTGGCGGTGGAACAGCAGGTGGTAGGT GGCAAGATTTGTCCCTTTCTCAGCCAAGGCAAGGTGGTGGACGCACAGGATATGGTAGTGGTGGTGGAAGGCCAATGGCA TTCAGTCAGGCAGCTGGTAGTGGCTATTCTAGGGATCGAACGGGACGGGGAACTGGCGGTGGCTATCAGAGTGCATATAG CGGCGGTTCAGGGAGGGCTCATCATGGGGGTTCAACATTGAGGGGGCACCAGGGCGATGTATCTACTCGCATGGTTAGCC TTAAGGGAGTTCGTGCTTAA
Protein sequence (LotjaGi5g1v0284500.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASRFWTQGGSDSEEEESDRDEEVETVAVESAGQDVSNSNKYYAENEGNSDDSDDDQKRVVRSAKDKRFEEMAATVDQMK NAVKINDWVSLQESFDKINKQLEKVMRVTGSDKAPRIYIKALVMLEDFLAEALANKDAKKKMSSSNAKALNAMKQKLKKN NKQYEELITKCRENPEIDEEKEEEESDEEYETDDEIIDPEQLKKQPVHSDSEASQYEDDKQDDGEGPWDQKLSKRDRLMD RQFMKDPSEITWDTVNKKFKEVVAARGKKGTGRFEQVEQLTFLTKVAKTPAQKLEILFSVVSAQFDVKPGLNGHMPINVW KKCVQNMLIILDVLVQYPNIKVDDSVEPDENETMKGSDYDGSIRVWGNLVAFLEKIDAEFFKSLQCIDPHTREYVERLRD EPVFSVLAQNVQEYLEMTGDFKAASKVALRRVELIYYKPQEVYDAMRKLAELTEDGDNGGEESKGFEETRIPTAFVATPE LVARKPTFPEDSRTLMDALVSLIYRYGEERTKARAMLCDIYHHALRDEFSIARDLLLMSHLQDNVQHMDISTQILFNRAM SQLGLCAFRVGLISEAHGCLSELYSGGRVKELLAQGVSQSRYHEKTPEQERLERRRQMPYHMHINLELLEAVHLISAMLL EVPNIAANVHDAKRRVISKTFRRLLEVNDKQTFVGPPENVRDHVMAATRVLSKGDFLKAFEIIVSLDVWKFVKNRDTVLE MLKDKIKEEALRTYLFTFASSYDSLSVDQLTKLFDLSVPRIHSIVSKMMSNEELHASWNQPTRCIVFQNVEHSRLQALTF QLVEKLSILAESNERAAEARIGGGGLDLPQRRRDGQDYAAAAAGGGGGTAGGRWQDLSLSQPRQGGGRTGYGSGGGRPMA FSQAAGSGYSRDRTGRGTGGGYQSAYSGGSGRAHHGGSTLRGHQGDVSTRMVSLKGVRA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 934 | 934 | 0.0 | – | |
| PANTHER | 1 | 934 | 934 | 0.0 | ||
| MobiDBLite | 1 | 65 | 65 | - | – | |
| Hamap | 2 | 870 | 869 | 46.898 | ||
| MobiDBLite | 31 | 46 | 16 | - | – | |
| Pfam | 44 | 652 | 609 | 2.0E-241 | ||
| Coils | 147 | 174 | 28 | - | – | |
| MobiDBLite | 169 | 234 | 66 | - | – | |
| MobiDBLite | 178 | 196 | 19 | - | – | |
| MobiDBLite | 197 | 234 | 38 | - | – | |
| ProSiteProfiles | 620 | 792 | 173 | 23.791 | ||
| Pfam | 660 | 788 | 129 | 1.3E-17 | ||
| SUPERFAMILY | 716 | 791 | 76 | 2.72E-11 | ||
| SMART | 721 | 809 | 89 | 1.3E-19 | ||
| SMART | 721 | 809 | 89 | 1.3E-19 | – | |
| MobiDBLite | 837 | 939 | 103 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | RNA binding | Interacting selectively and non-covalently with an RNA molecule or a portion thereof. | ||
| Molecular function | Translation initiation factor activity | Functions in the initiation of ribosome-mediated translation of mRNA into a polypeptide. | ||
| Cellular component | Eukaryotic translation initiation factor 3 complex | A complex of several polypeptides that plays at least two important roles in protein synthesis: First, eIF3 binds to the 40S ribosome and facilitates loading of the Met-tRNA/eIF2.GTP ternary complex to form the 43S preinitiation complex. Subsequently, eIF3 apparently assists eIF4 in recruiting mRNAs to the 43S complex. The eIF3 complex contains five conserved core subunits, and may contain several additional proteins; the non-core subunits are thought to mediate association of the complex with specific sets of mRNAs. | ||
| Biological process | Translational initiation | The process preceding formation of the peptide bond between the first two amino acids of a protein. This includes the formation of a complex of the ribosome, mRNA or circRNA, and an initiation complex that contains the first aminoacyl-tRNA. | ||
| Molecular function | Translation initiation factor binding | Interacting selectively and non-covalently with a translation initiation factor, any polypeptide factor involved in the initiation of ribosome-mediated translation. |
Expression pattern of LotjaGi5g1v0284500.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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