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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0284500 |
| Transcript ID | LotjaGi5g1v0284500.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Eukaryotic translation initiation factor 3 subunit C; TAIR: AT3G56150.1 eukaryotic translation initiation factor 3C; Swiss-Prot: sp|Q9XHM1|EIF3C_MEDTR Eukaryotic translation initiation factor 3 subunit C; TrEMBL-Plants: tr|I1JQD9|I1JQD9_SOYBN Eukaryotic translation initiation factor 3 subunit C; Found in the gene: LotjaGi5g1v0284500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:60112616..60118118) extracted from Lotus japonicus Gifu genome v1.2.
ATGGCGGCCACTGTCGACCAGATGAAGAATGCTGTCAAAATTAATGACTGGGTGAGTCTGCAAGAGAGCTTTGACAAGAT TAACAAGCAGCTTGAGAAGGTCATGCGTGTCACCGGGTCTGACAAGGCTCCCAGGATTTACATCAAGGCTCTTGTGATGC TGGAGGATTTCTTGGCTGAGGCTTTGGCGAATAAGGATGCCAAGAAGAAGATGAGTAGTAGCAATGCCAAAGCCTTGAAC GCTATGAAGCAGAAGTTGAAGAAGAATAATAAGCAGTATGAGGAACTGATTACCAAGTGCAGGGAGAATCCCGAGATTGA CGAGGAAAAAGAGGAAGAGGAGTCGGATGAAGAGTATGAAACTGATGATGAGATTATCGACCCCGAGCAGCTTAAGAAGC AGCCCGTGCATTCGGATTCGGAAGCCTCTCAATATGAGGATGATAAGCAAGATGATGGAGAAGGACCTTGGGACCAAAAG CTTAGCAAGAGAGACAGGCTTATGGATAGACAGTTCATGAAAGACCCTAGCGAGATCACCTGGGACACTGTTAACAAGAA GTTCAAAGAGGTTGTGGCGGCTAGAGGCAAGAAGGGTACCGGAAGGTTTGAACAGGTTGAGCAGCTCACCTTCTTGACTA AAGTTGCTAAAACACCTGCACAGAAGCTGGAAATTCTTTTCAGTGTGGTCTCTGCTCAGTTTGATGTTAAGCCAGGCCTC AATGGGCATATGCCCATAAATGTGTGGAAGAAATGTGTACAGAATATGCTGATCATTCTGGATGTTCTAGTGCAGTACCC AAACATAAAGGTTGATGATTCAGTGGAACCAGATGAGAATGAAACTATGAAAGGGTCTGACTATGATGGATCTATTCGAG TTTGGGGTAACTTAGTTGCCTTCTTAGAAAAAATAGATGCTGAGTTTTTCAAGAGCCTGCAATGCATAGATCCTCACACA CGTGAGTATGTTGAGAGACTTAGGGATGAGCCTGTGTTTTCGGTTCTTGCTCAGAATGTCCAGGAATATCTTGAAATGAC TGGCGACTTTAAAGCTGCTTCTAAGGTAGCCTTGAGGAGGGTTGAACTCATCTACTACAAACCACAAGAGGTTTATGATG CCATGAGAAAATTGGCTGAGCTGACAGAAGATGGAGATAATGGAGGGGAGGAGTCAAAAGGTTTTGAGGAAACAAGAATT CCTACTGCATTTGTTGCTACTCCAGAGCTTGTGGCCCGAAAACCCACATTCCCTGAGGATAGTAGGACTCTGATGGATGC ATTAGTCTCACTGATATACAGATATGGAGAGGAGCGCACCAAAGCACGTGCAATGCTTTGTGATATATATCACCATGCTC TTCGTGATGAGTTCTCAATAGCCCGTGATCTACTGCTTATGAGTCACTTGCAAGATAACGTTCAGCATATGGACATCTCT ACACAGATACTTTTTAACAGAGCTATGTCACAATTAGGTCTCTGTGCTTTTCGTGTTGGACTGATTTCTGAAGCACATGG TTGCTTGTCTGAACTTTATTCTGGTGGAAGGGTGAAAGAGTTGCTTGCACAAGGCGTGTCACAAAGTCGTTATCATGAGA AGACCCCCGAACAGGTACTATTCCCACCCCCACCCCCACCCCCCAAAAAAAAGTTTTTCTTAGCATATATGATGTCTAAA TGAAAAGTCACCAAGATCTCCTGTCTGTCTGTCTGTTACTCACCCTGGCCCCTCATTGCTAGGTGTCAGTTAAGGCACTT CTGCTGCTAGGCATTTAGCGTTATTTGCATTTCCTAGGTGAACATCTCTGTTTCATATGATAATGCATTGCATTTGACAA TAAAATGATATTAGTCTAGTCTATATGATAATAGCTTACGTGCAGTGGCGGATCCAGGACCCCGAGTCAGGGGGTTCAAA TTTTTCAAATAAGCACATCGATAAAAATAAATTAAAAATAACTGTAATATGTTAATACATCAACATAACATACCAATACC ATAATCATAATTAACTTCAACATAAAGTGGTTGCAGGGACGGAGGCAGAAATTTCTAAAGGGGGACTAAGATCTAAATGA ATATGATTTGTGAAAATAATTCAATTCTCATCAAATAAAGAATGTGCCAAAAAAAAACATAGATATTTTAGTGATAACAA AAAATAGTTTGAGTGCAAGAGATATTTTATATAAAAATAAGAATTATAAGATCATTAACAATTTTTCTTGGCAAACAAAA CCAACAACTATATTTGATCATTAACAATTTGAATCTGTTCTGCTAGATTATACTGCAATCTCATTCATAGCTGAGCATAT TTGTTCAAATATCCATCAATGATTTACACTAAGACTTTTAGGAAAGGAAAGCATTGTGTAACCAAGTTTTGGATGTATTA ATGAATTCAAATGCTGAGTTTAGACCCTCCTTGGGTTTGAAACGTTTCCTGTTAAGGCTAGCCACGCCGTGGCGAAGTTT GTATGCTCTTCTATAACTCTTCAAAACCTTCTTCATCTCCTTCATCTTGTAACATTTGAAATTCTCTTCTCCATGTTTCC ATCTGTTCATCAAAATGTCTTAGTTGTTCTGCAACAAACAGTATATTATTGTAGTTTCTTGCAGTAAAATCTCTACCAAA ACTCTCTGCAACTCCTTCACATTTTATCATTTCAACCCGAAAGCCTTTACTCATGAACAATTTATCCAGCCATTGCTGTG TAATGGCATTGATCTCTATGTCACTCTCAGCTAACCAGGCAGGCAACTCTTCCACAAAAAAAGATCCCTTCATTGTCCAG AAAGCTATATTTCACTGGTGCCTTTCATCAAACAATTGGTGTGCCCAATTTCATTATGCCCCTTTTCTGCCAATGTCAAA CATAATGAAGAGAATGATAACCTTAGCTGCAACATTATGATAATTAAAGGATATAACAAGTGGGAAGAAAACATGAATAA AAAGAGAAAACTCATTCAGGCATTTTGTCATACAGTTTACAGACACCAAAATTTCAATGATGATATGAAGAAAGAAACCT ATCATTCTTACCCATCCCCCTCCCTCACTTTCTTACCCAAAAGTTGCTCGCCACTCATTTTATGCCTCTAAATCCCAATC AATTTGAACACTATCAATCTAATTTCTAAACCATTCAAACGATTGAAAAGAACATTGCACAAAACACAACTGTAAACCCA TTACCTTGACTCCTTGAGTGCAGATTCCCAACACTGGCAACGCAGAGCACTAAGAGTGGCCTTCTCGTGAGATACAGAGA TTGAGAGGCGCGCGGCGGTGGTGGCGTGGCGTGGTGGTGGACTGGTGGCCGGTGGTGCGCCGTGCTCGACTGCTCATGCG TGTGCTTGTTGACGGCCAGACCTACACACCTAGTGAGAGAAAGACTGGGTGAGGGGCATGAGTCTGTGAGTGTGTGAGAG AGGTGTAAGTGGGGTCATGGGTGCAAATTGAAATTCTCAGGGGGTTCAAAAAAGAAACAATACAAGGGGGTAAGTAGAAA TTTTTCTTTTTTCAGGGGGTTCAACTGAACCCCCTCACTGCTATGTGGGTCCGCCCCTGCTTACGTGCACTATAATCAAC AAGAATAAGTAAACCCTTTACCTAATAGAAAATGGTGTAATGTGAAGAACCATTATGATCGTTTGTTAAGAGGAATTGGG CTAGCATTTGTTTGATCCATTCCCTTTGAGATGCCAATGCTCTGCTGCTCAGGACATGGGGTGGAATTTTTTCCCTCCAG TTACTCACAGATGCTAGTATAATTTTTTTAATAGTCCAGAGTTATTAGTTATCTATTTATTGATTTAGTCTTCTAAATTC AGTTTTGAGGAAACTCCTAATATTTTAATAAGGTTGTGAGATATCAGAAGCTATCAATTTTGAAGGGAATTGAGGGAGAT GCTCATGAACAGGGAACCTAATAGCTATACCATTTCTAATTTTTAGCTTGACTCTGTTGAATCAAGCTATCACCAACTAG AGAAATGTGGTTGATTCCCTTGCAAAACAGTCATTTATTGCCAGTGTTCTCATGCATCTGTGTTACAGTCATCATTTTAA ATGTAGAACTATTTAAACTTTCTCTAGCTGTTGTTGCCTTCAGTGTGTTCCATTTAGTACTTGAATTTTTTTAAGGGGGG AAAATACATCATTTGAATAGCATTCTATTTAGGCTTTTTTTTCTCTGGGGGGGCAACTGCCCCATTTCAGTTTCATCAGT ACCTTATACTTTGGTGATGATATGCCTTGCTAATTTAGCATGATTTCTCTATAATTATCAGTATTTGTAAACTTGTAACC ATGTTACTGTGACATTGATGTCTTCCATAGCTTGTATGATAAATGATTTGCAACTGTAAGTTATTTTAACATTTTTATAT TACATGTTTCCTTCTCAGTCAATTTTAAAGAATTCCTTTTGAATTGTGAGAATCACATTTGACGTCACAGCTAACTCTTT TTAATCCTCTTTCAGGAAAGGTTGGAAAGAAGACGTCAAATGCCATATCATATGCATATAAATCTTGAGCTTCTGGAGGC AGTTCATCTTATATCTGCTATGCTGCTAGAAGTTCCCAATATAGCAGCCAATGTTCATGATGCAAAGCGCAGGGTCATCA GTAAGACATTTCGTCGCTTGCTTGAGGTCAATGATAAACAAACATTTGTTGGTCCACCTGAGAATGTAAGAGATCACGTT ATGGCTGCCACAAGGGTTCTTAGTAAAGGAGACTTCCTCAAGGCTTTTGAAATTATAGTGTCTCTTGATGTATGGAAATT TGTGAAAAACCGGGACACCGTGCTCGAAATGCTGAAGGACAAAATCAAGGAGGAGGCACTTAGGACATATTTGTTTACCT TTGCCTCATCGTATGATTCTTTGAGTGTGGACCAACTCACAAAACTTTTTGATCTCTCTGTTCCTAGAATTCATAGCATT GTCAGTAAGATGATGAGCAATGAGGAGCTTCATGCAAGCTGGAACCAGCCAACTCGGTGTATTGTTTTCCAAAACGTTGA GCACTCTAGGCTGCAGGCGTTGACATTCCAATTGGTAGAGAAGTTATCTATCCTTGCAGAGAGTAATGAAAGAGCTGCAG AGGCAAGGATTGGTGGTGGTGGATTGGATCTGCCTCAGAGGCGGAGAGATGGCCAGGACTATGCTGCTGCTGCAGCTGGT GGTGGCGGTGGAACAGCAGGTGGTAGGTGGCAAGATTTGTCCCTTTCTCAGCCAAGGCAAGGTGGTGGACGCACAGGATA TGGTAGTGGTGGTGGAAGGCCAATGGCATTCAGTCAGGCAGCTGGTAGTGGCTATTCTAGGGATCGAACGGGACGGGGAA CTGGCGGTGGCTATCAGAGTGCATATAGCGGCGGTTCAGGGAGGGCTCATCATGGGGGTTCAACATTGAGGGGGCACCAG GGCGATGTATCTACTCGCATGGTTAGCCTTAAGGGAGTTCGTGCTTAAAGAATTTTATTTGAG
CDS sequence (LotjaGi5g1v0284500.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGGCCACTGTCGACCAGATGAAGAATGCTGTCAAAATTAATGACTGGGTGAGTCTGCAAGAGAGCTTTGACAAGAT TAACAAGCAGCTTGAGAAGGTCATGCGTGTCACCGGGTCTGACAAGGCTCCCAGGATTTACATCAAGGCTCTTGTGATGC TGGAGGATTTCTTGGCTGAGGCTTTGGCGAATAAGGATGCCAAGAAGAAGATGAGTAGTAGCAATGCCAAAGCCTTGAAC GCTATGAAGCAGAAGTTGAAGAAGAATAATAAGCAGTATGAGGAACTGATTACCAAGTGCAGGGAGAATCCCGAGATTGA CGAGGAAAAAGAGGAAGAGGAGTCGGATGAAGAGTATGAAACTGATGATGAGATTATCGACCCCGAGCAGCTTAAGAAGC AGCCCGTGCATTCGGATTCGGAAGCCTCTCAATATGAGGATGATAAGCAAGATGATGGAGAAGGACCTTGGGACCAAAAG CTTAGCAAGAGAGACAGGCTTATGGATAGACAGTTCATGAAAGACCCTAGCGAGATCACCTGGGACACTGTTAACAAGAA GTTCAAAGAGGTTGTGGCGGCTAGAGGCAAGAAGGGTACCGGAAGGTTTGAACAGGTTGAGCAGCTCACCTTCTTGACTA AAGTTGCTAAAACACCTGCACAGAAGCTGGAAATTCTTTTCAGTGTGGTCTCTGCTCAGTTTGATGTTAAGCCAGGCCTC AATGGGCATATGCCCATAAATGTGTGGAAGAAATGTGTACAGAATATGCTGATCATTCTGGATGTTCTAGTGCAGTACCC AAACATAAAGGTTGATGATTCAGTGGAACCAGATGAGAATGAAACTATGAAAGGGTCTGACTATGATGGATCTATTCGAG TTTGGGGTAACTTAGTTGCCTTCTTAGAAAAAATAGATGCTGAGTTTTTCAAGAGCCTGCAATGCATAGATCCTCACACA CGTGAGTATGTTGAGAGACTTAGGGATGAGCCTGTGTTTTCGGTTCTTGCTCAGAATGTCCAGGAATATCTTGAAATGAC TGGCGACTTTAAAGCTGCTTCTAAGGTAGCCTTGAGGAGGGTTGAACTCATCTACTACAAACCACAAGAGGTTTATGATG CCATGAGAAAATTGGCTGAGCTGACAGAAGATGGAGATAATGGAGGGGAGGAGTCAAAAGGTTTTGAGGAAACAAGAATT CCTACTGCATTTGTTGCTACTCCAGAGCTTGTGGCCCGAAAACCCACATTCCCTGAGGATAGTAGGACTCTGATGGATGC ATTAGTCTCACTGATATACAGATATGGAGAGGAGCGCACCAAAGCACGTGCAATGCTTTGTGATATATATCACCATGCTC TTCGTGATGAGTTCTCAATAGCCCGTGATCTACTGCTTATGAGTCACTTGCAAGATAACGTTCAGCATATGGACATCTCT ACACAGATACTTTTTAACAGAGCTATGTCACAATTAGGTCTCTGTGCTTTTCGTGTTGGACTGATTTCTGAAGCACATGG TTGCTTGTCTGAACTTTATTCTGGTGGAAGGGTGAAAGAGTTGCTTGCACAAGGCGTGTCACAAAGTCGTTATCATGAGA AGACCCCCGAACAGGAAAGGTTGGAAAGAAGACGTCAAATGCCATATCATATGCATATAAATCTTGAGCTTCTGGAGGCA GTTCATCTTATATCTGCTATGCTGCTAGAAGTTCCCAATATAGCAGCCAATGTTCATGATGCAAAGCGCAGGGTCATCAG TAAGACATTTCGTCGCTTGCTTGAGGTCAATGATAAACAAACATTTGTTGGTCCACCTGAGAATGTAAGAGATCACGTTA TGGCTGCCACAAGGGTTCTTAGTAAAGGAGACTTCCTCAAGGCTTTTGAAATTATAGTGTCTCTTGATGTATGGAAATTT GTGAAAAACCGGGACACCGTGCTCGAAATGCTGAAGGACAAAATCAAGGAGGAGGCACTTAGGACATATTTGTTTACCTT TGCCTCATCGTATGATTCTTTGAGTGTGGACCAACTCACAAAACTTTTTGATCTCTCTGTTCCTAGAATTCATAGCATTG TCAGTAAGATGATGAGCAATGAGGAGCTTCATGCAAGCTGGAACCAGCCAACTCGGTGTATTGTTTTCCAAAACGTTGAG CACTCTAGGCTGCAGGCGTTGACATTCCAATTGGTAGAGAAGTTATCTATCCTTGCAGAGAGTAATGAAAGAGCTGCAGA GGCAAGGATTGGTGGTGGTGGATTGGATCTGCCTCAGAGGCGGAGAGATGGCCAGGACTATGCTGCTGCTGCAGCTGGTG GTGGCGGTGGAACAGCAGGTGGTAGGTGGCAAGATTTGTCCCTTTCTCAGCCAAGGCAAGGTGGTGGACGCACAGGATAT GGTAGTGGTGGTGGAAGGCCAATGGCATTCAGTCAGGCAGCTGGTAGTGGCTATTCTAGGGATCGAACGGGACGGGGAAC TGGCGGTGGCTATCAGAGTGCATATAGCGGCGGTTCAGGGAGGGCTCATCATGGGGGTTCAACATTGAGGGGGCACCAGG GCGATGTATCTACTCGCATGGTTAGCCTTAAGGGAGTTCGTGCTTAA
Protein sequence (LotjaGi5g1v0284500.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAATVDQMKNAVKINDWVSLQESFDKINKQLEKVMRVTGSDKAPRIYIKALVMLEDFLAEALANKDAKKKMSSSNAKALN AMKQKLKKNNKQYEELITKCRENPEIDEEKEEEESDEEYETDDEIIDPEQLKKQPVHSDSEASQYEDDKQDDGEGPWDQK LSKRDRLMDRQFMKDPSEITWDTVNKKFKEVVAARGKKGTGRFEQVEQLTFLTKVAKTPAQKLEILFSVVSAQFDVKPGL NGHMPINVWKKCVQNMLIILDVLVQYPNIKVDDSVEPDENETMKGSDYDGSIRVWGNLVAFLEKIDAEFFKSLQCIDPHT REYVERLRDEPVFSVLAQNVQEYLEMTGDFKAASKVALRRVELIYYKPQEVYDAMRKLAELTEDGDNGGEESKGFEETRI PTAFVATPELVARKPTFPEDSRTLMDALVSLIYRYGEERTKARAMLCDIYHHALRDEFSIARDLLLMSHLQDNVQHMDIS TQILFNRAMSQLGLCAFRVGLISEAHGCLSELYSGGRVKELLAQGVSQSRYHEKTPEQERLERRRQMPYHMHINLELLEA VHLISAMLLEVPNIAANVHDAKRRVISKTFRRLLEVNDKQTFVGPPENVRDHVMAATRVLSKGDFLKAFEIIVSLDVWKF VKNRDTVLEMLKDKIKEEALRTYLFTFASSYDSLSVDQLTKLFDLSVPRIHSIVSKMMSNEELHASWNQPTRCIVFQNVE HSRLQALTFQLVEKLSILAESNERAAEARIGGGGLDLPQRRRDGQDYAAAAAGGGGGTAGGRWQDLSLSQPRQGGGRTGY GSGGGRPMAFSQAAGSGYSRDRTGRGTGGGYQSAYSGGSGRAHHGGSTLRGHQGDVSTRMVSLKGVRA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 863 | 863 | 0.0 | – | |
| Hamap | 1 | 799 | 799 | 43.889 | ||
| PANTHER | 1 | 863 | 863 | 0.0 | ||
| Pfam | 1 | 581 | 581 | 2.4E-229 | ||
| Coils | 76 | 103 | 28 | - | – | |
| MobiDBLite | 98 | 169 | 72 | - | – | |
| MobiDBLite | 107 | 125 | 19 | - | – | |
| MobiDBLite | 126 | 169 | 44 | - | – | |
| ProSiteProfiles | 549 | 721 | 173 | 23.791 | ||
| Pfam | 589 | 717 | 129 | 1.1E-17 | ||
| SUPERFAMILY | 645 | 720 | 76 | 2.48E-11 | ||
| SMART | 650 | 738 | 89 | 1.3E-19 | ||
| SMART | 650 | 738 | 89 | 1.3E-19 | – | |
| MobiDBLite | 766 | 868 | 103 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | RNA binding | Interacting selectively and non-covalently with an RNA molecule or a portion thereof. | ||
| Molecular function | Translation initiation factor activity | Functions in the initiation of ribosome-mediated translation of mRNA into a polypeptide. | ||
| Cellular component | Eukaryotic translation initiation factor 3 complex | A complex of several polypeptides that plays at least two important roles in protein synthesis: First, eIF3 binds to the 40S ribosome and facilitates loading of the Met-tRNA/eIF2.GTP ternary complex to form the 43S preinitiation complex. Subsequently, eIF3 apparently assists eIF4 in recruiting mRNAs to the 43S complex. The eIF3 complex contains five conserved core subunits, and may contain several additional proteins; the non-core subunits are thought to mediate association of the complex with specific sets of mRNAs. | ||
| Biological process | Translational initiation | The process preceding formation of the peptide bond between the first two amino acids of a protein. This includes the formation of a complex of the ribosome, mRNA or circRNA, and an initiation complex that contains the first aminoacyl-tRNA. | ||
| Molecular function | Translation initiation factor binding | Interacting selectively and non-covalently with a translation initiation factor, any polypeptide factor involved in the initiation of ribosome-mediated translation. |
Expression pattern of LotjaGi5g1v0284500.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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