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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0285400 |
| Transcript ID | LotjaGi5g1v0285400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Polyadenylate-binding protein; TAIR: AT1G71770.1 poly(A)-binding protein 5; Swiss-Prot: sp|Q05196|PABP5_ARATH Polyadenylate-binding protein 5; TrEMBL-Plants: tr|I1NH63|I1NH63_SOYBN Polyadenylate-binding protein; Found in the gene: LotjaGi5g1v0285400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:60179403..60183162) extracted from Lotus japonicus Gifu genome v1.2.
GTGGTGGCTCAGACTGCAACAGCCCCGGTTGCTCCGGTGACGGCTCCAGCGCCGGCATTGGTCGGAGGAGGGCCATTTGC GAATGCGTCTCTGTACGTAGGCGATCTCGAAGGGAACGTGAACGAGGCGCAGCTGTATGATCTGTTCAGCCAGTTGGCTC AGATTGTCTCGATTAGGGTTTGCAGGGATCAGACCAAGCGATCCTCTCTCGGTTACGCTTATGTCAACTTTGCTAACGCT CAGGATGGTGAGTCTTCTTCGTTCTTGTTTGATCTTCTTAGTGTTTTTGCATGCAGAGTGACTGGATCATGTTTATTATT ATTTTTTCTTATTGTTATTTAATTAGACTGAGAGATCAGTCACTGATTAAAAAAATGGAAATTTTACTGGACTGATGCTA ATGGAATCAATAATTTTGTAGTGAATTTTGTTTTCATGTGTGATGGTGATTGATTGGTAGAGGGGAAATTTTGGGTGGCT GCTGTTTTTTTTACTGATATGATTGATTAGATGTGTTGTTACAAGATTCACATCATAACTGCTGCCTGCAACTGATATTG ATTTCAGGATGAATGAGGTTTTAGCCTTGCTGAGTTGAAATCTCTATGCTTTGATTTTACTGTGGGTTGTATTTTTATTA TTTTATTGTTACCTTGTGTTTTTTGCATAGTAGTCAATCGCGGATTGCGGCCTGTCGCGGATGACCCCCAAAAGTGAAAT CCCATACAAGGGAAGGCCGTGAATAGTGGGATTTTGCAGCCGCAATCCCGTCACGGCAGGGGTCTACGAGACGGCGCCGC TATCGCGCACTATCGATAACTATGGTTTTTTTATCTTATTTTTGCTTCCCTGATTTTCAGCGGCTAATGCATTGGAACTT CTGAACTTCACTCCTGTGAATGGGAAGCCTATTCGGATTATGTTTTCTCAGCGTGATCCGAGCATCCGGAAAAGTGGATA TGCCAATGTGTTTATCAAGAACCTGGACACATCAATTGATAACAAGGCATTGCATGACACTTTTGCTGCCTTTGGCCCTG TGCTTTCTTGTAAGGTGGCTGTTGATGCATCTGGTCAGTCGAAAGGGTATGGTTTTGTGCAGTTTGACAATGATGAGGCT GCCCAGAATGCCATTAACAAGTTGAATGGCATGCTGATTAATGATAAGAAAGTCTATGTTGGACTCTTTGTGCGGCACCA GGAAAGGGGTCGAGCAAATGGATCACCCAAGTTCACTAATGTTTATGTCAAGAACCTTTCTGAATCATGCACTGATGAGG ACCTGAAGCAGCTATTTGCCCCCTTTGGTGTGATAACTAGTGCAACAGTTATGAAAGATGTGAATGGCAATTCCAAATGC TTTGGCTTTGTGAATTTCGAGAGCCCAGATTCAGCGGCTGCTGCAGTTGAGAAGTTGAATGGGACAACTATCAATGATGA CAAGGTTTTATATGCGGGAAGAGCTCAGAGGAAAGCAGAAAGAGAAGCTGAGTTGAGAGCCAAATTTGAGCAGGAAAGAA TTAGCAGATATGAAAAGTTACAAGGTGCTAACTTGTATGTGAAAAATCTTGATGACAACATCAATGATGAAAAGCTGAAG GATTTGTTTTCCGAGTTTGGAACTATAACATCGTTCAAGGTATGTTAAAATTCTCATTATATGTCTCTCTGAATCTCTAT ACTTTTTCGTGAATAAGTGCGACCATATAAGCCCTTGTTCGAGTTTACCTTATACATTCAATTAGCCTCTTTTACTGGTT GGTTTTATTGTTATAATTTGAGGAATTAAATTATAAATTGTATTTATTAGGTGATGCTGGATTCTTATGGGAATAGCAAA GGTTCTGGTTTTGTGGCCTTTTCTACTCCTGAGGAAGCAAATCAAGCCGTAAGTCAATAAATTTTTTGGTTTGAAGAGGT GTGGCTGAGCTACATATTTCCCTTTCTTTTATTGAACGCATGCTCTATTTTTATCATCTTTTGTTCAGATGACTGAGATG AATGGGAAGTTGGTTGGTCGGAAGCCTCTCTATGTTGCTGTCGCCCAGCGCAAAGAAGACAGGAAGGCTCGATTGCAGGT AATGCTTTTTTTAATATCATTATTCTGACTCAAATCCGTACTACATTATTAACATGCTGTAGCTTATAGTTAAGTTGATT TTCATTTGTTGAGATATTCATTTATAGTTTATGATTCGTGTAAATGATTTTTCTGGAGTATTAATGAAGTTTCATTATAT CTTATTTATTTTTTTGGTGATTTTTTTTTTTTGTGTGCGAGTCATTTGAGTTATATTTCGCCCTCCCTGTCTAAATCTTT TGCAGGTTGAAGTTTGACATATTCAATCCCCCCTTCCCCCAAACAAAACAAAGCTTCTTTACATCTATAATTTTTTAGCA TAAAAATCATGGTTGTTTGGTTGTGTTTAGGAGTCTATCCTTAAACTCCACTGGTGGTATAACATATTGACTTTTCTGCA GGCTCATTTTGCTCAAATCCAAGTACCTGGTGGAATGGCACCTCTGCCTGCAGGAATTCCTGGATATCATGCAGGGACCC CAAGACTTGCCCCTCAACAGCTATATTATGGTCAAGGGTCACCTGGCTTCATGCCCCCTCAGCCTGCTGGATATGGTTTC CAGCAGCAAATGTTGCCAGGAATGCGGCCTGGTGTTGCTCCAAATTTCATTATGCCATACCAGGTTCAGAGACAGGGTCA GCCTGGGCAGAGAATGGGTGGTCGACGAAATGGAAACCTCCAATCAGGGCAGCCGAATCAAGTAATTATTCCTTATGACT GAAGTTTGAGTTTTTTTTTGTTTTTTTTTATAAATGATTTTTTTACACTTAATAATCTTTTTAATTTTTTTGAAAGCAGG TGCCACATCGCAACTCCAACCAAGGGTTTAGATATATGGCCACCAATCGAAATGGTATGGACCCATCTGTTGTTCCTCAA AGTTCAGTGGGTCCAGTGATGCCCATGCCCTTTGATGGTTATGGAGTTACTGCAGCTCCTGCTGAAAATCAGCGTCCCGC GGTGTCATCTGCCACACTTGCCTCAACTTTGGCTTCTGCTACCCCAGAAAATCAGCGCCTGGTATGCTTACGTTGTTATT TTACATGTAGGATCTATGTATTATTTCCCCTAGAGTAAATTGAAATTTTGGTCTCTTGAAATGTACTTCATCACACAGTC CTTCATTTAAATAATATTAGGGCTTAGTCCTTAAATTAGTCAGACTCTTTTATGTTACTCCTTTTGCTATCTTTGGTAGG GAATAACGTAAAATGAGTTTGTAAATTTAAAGGACAAAATCATACACAAATTAAATCAAGTATTGAATTCTGGTTGAGAT ACATATTCTAGGACTAAATTACCATTATACTAATTTTTGGTTTTTCTTTGAAGTAGGGTTTCATGCCGATCATTTAATTT GAAATCACCAGTATTATGACTTGACCAAATTTCGAATTATCATTGTATGAGAAATTTAATCTTTGTTATATGTTGTTTAA AATTAACAGATGTTGGGAGAACATCTATATCCCCTCGTGGAGCATCTTACCCCAAACCAACATACTGCAAAGGTGACTGG GATGTTGCTGGAGATGGACCAGTCAGAGGTAATACATCTTATTGAATCTCCTGAGGACCTGAAGATGAAGGTGTCTGAGG CATTGCGGGTCCTTCGTGATGCTGCTGCACCAGGTTCTGAAGTTAGTGATCAGCTTGGCTCATTCTCATTGAATGAATGA
CDS sequence (LotjaGi5g1v0285400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTTTCTCAGCGTGATCCGAGCATCCGGAAAAGTGGATATGCCAATGTGTTTATCAAGAACCTGGACACATCAATTGA TAACAAGGCATTGCATGACACTTTTGCTGCCTTTGGCCCTGTGCTTTCTTGTAAGGTGGCTGTTGATGCATCTGGTCAGT CGAAAGGGTATGGTTTTGTGCAGTTTGACAATGATGAGGCTGCCCAGAATGCCATTAACAAGTTGAATGGCATGCTGATT AATGATAAGAAAGTCTATGTTGGACTCTTTGTGCGGCACCAGGAAAGGGGTCGAGCAAATGGATCACCCAAGTTCACTAA TGTTTATGTCAAGAACCTTTCTGAATCATGCACTGATGAGGACCTGAAGCAGCTATTTGCCCCCTTTGGTGTGATAACTA GTGCAACAGTTATGAAAGATGTGAATGGCAATTCCAAATGCTTTGGCTTTGTGAATTTCGAGAGCCCAGATTCAGCGGCT GCTGCAGTTGAGAAGTTGAATGGGACAACTATCAATGATGACAAGGTTTTATATGCGGGAAGAGCTCAGAGGAAAGCAGA AAGAGAAGCTGAGTTGAGAGCCAAATTTGAGCAGGAAAGAATTAGCAGATATGAAAAGTTACAAGGTGCTAACTTGTATG TGAAAAATCTTGATGACAACATCAATGATGAAAAGCTGAAGGATTTGTTTTCCGAGTTTGGAACTATAACATCGTTCAAG GTGATGCTGGATTCTTATGGGAATAGCAAAGGTTCTGGTTTTGTGGCCTTTTCTACTCCTGAGGAAGCAAATCAAGCCAT GACTGAGATGAATGGGAAGTTGGTTGGTCGGAAGCCTCTCTATGTTGCTGTCGCCCAGCGCAAAGAAGACAGGAAGGCTC GATTGCAGGCTCATTTTGCTCAAATCCAAGTACCTGGTGGAATGGCACCTCTGCCTGCAGGAATTCCTGGATATCATGCA GGGACCCCAAGACTTGCCCCTCAACAGCTATATTATGGTCAAGGGTCACCTGGCTTCATGCCCCCTCAGCCTGCTGGATA TGGTTTCCAGCAGCAAATGTTGCCAGGAATGCGGCCTGGTGTTGCTCCAAATTTCATTATGCCATACCAGGTTCAGAGAC AGGGTCAGCCTGGGCAGAGAATGGGTGGTCGACGAAATGGAAACCTCCAATCAGGGCAGCCGAATCAAGTGCCACATCGC AACTCCAACCAAGGGTTTAGATATATGGCCACCAATCGAAATGGTATGGACCCATCTGTTGTTCCTCAAAGTTCAGTGGG TCCAGTGATGCCCATGCCCTTTGATGGTTATGGAGTTACTGCAGCTCCTGCTGAAAATCAGCGTCCCGCGGTGTCATCTG CCACACTTGCCTCAACTTTGGCTTCTGCTACCCCAGAAAATCAGCGCCTGATGTTGGGAGAACATCTATATCCCCTCGTG GAGCATCTTACCCCAAACCAACATACTGCAAAGGTGACTGGGATGTTGCTGGAGATGGACCAGTCAGAGGTAATACATCT TATTGAATCTCCTGAGGACCTGAAGATGAAGGTGTCTGAGGCATTGCGGGTCCTTCGTGATGCTGCTGCACCAGGTTCTG AAGTTAGTGATCAGCTTGGCTCATTCTCATTGAATGAATGA
Protein sequence (LotjaGi5g1v0285400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MFSQRDPSIRKSGYANVFIKNLDTSIDNKALHDTFAAFGPVLSCKVAVDASGQSKGYGFVQFDNDEAAQNAINKLNGMLI NDKKVYVGLFVRHQERGRANGSPKFTNVYVKNLSESCTDEDLKQLFAPFGVITSATVMKDVNGNSKCFGFVNFESPDSAA AAVEKLNGTTINDDKVLYAGRAQRKAEREAELRAKFEQERISRYEKLQGANLYVKNLDDNINDEKLKDLFSEFGTITSFK VMLDSYGNSKGSGFVAFSTPEEANQAMTEMNGKLVGRKPLYVAVAQRKEDRKARLQAHFAQIQVPGGMAPLPAGIPGYHA GTPRLAPQQLYYGQGSPGFMPPQPAGYGFQQQMLPGMRPGVAPNFIMPYQVQRQGQPGQRMGGRRNGNLQSGQPNQVPHR NSNQGFRYMATNRNGMDPSVVPQSSVGPVMPMPFDGYGVTAAPAENQRPAVSSATLASTLASATPENQRLMLGEHLYPLV EHLTPNQHTAKVTGMLLEMDQSEVIHLIESPEDLKMKVSEALRVLRDAAAPGSEVSDQLGSFSLNE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 532 | 532 | 5.8E-230 | – | |
| TIGRFAM | 1 | 526 | 526 | 4.2E-185 | ||
| PANTHER | 1 | 532 | 532 | 5.8E-230 | – | |
| SUPERFAMILY | 3 | 98 | 96 | 9.37E-27 | ||
| Gene3D | 4 | 95 | 92 | 5.9E-23 | ||
| CDD | 13 | 88 | 76 | 2.83279E-47 | – | |
| ProSiteProfiles | 15 | 92 | 78 | 18.444 | ||
| SMART | 16 | 88 | 73 | 1.6E-24 | ||
| SMART | 16 | 88 | 73 | 3.3 | ||
| Pfam | 17 | 85 | 69 | 1.0E-20 | ||
| Gene3D | 96 | 198 | 103 | 7.0E-26 | ||
| CDD | 105 | 185 | 81 | 5.04524E-38 | – | |
| SUPERFAMILY | 105 | 289 | 185 | 6.12E-49 | ||
| ProSiteProfiles | 106 | 184 | 79 | 18.7 | ||
| SMART | 107 | 179 | 73 | 1.1 | ||
| SMART | 107 | 180 | 74 | 3.6E-26 | ||
| Pfam | 108 | 175 | 68 | 1.8E-24 | ||
| Coils | 179 | 207 | 29 | - | – | |
| Gene3D | 205 | 308 | 104 | 6.8E-26 | ||
| CDD | 209 | 287 | 79 | 9.78227E-47 | – | |
| ProSiteProfiles | 210 | 287 | 78 | 19.536 | ||
| SMART | 211 | 283 | 73 | 4.2E-25 | ||
| SMART | 211 | 283 | 73 | 0.66 | ||
| Pfam | 212 | 280 | 69 | 2.5E-20 | ||
| SUPERFAMILY | 363 | 531 | 169 | 4.19E-25 | ||
| MobiDBLite | 374 | 402 | 29 | - | – | |
| Gene3D | 449 | 530 | 82 | 2.3E-30 | – | |
| ProSiteProfiles | 452 | 530 | 79 | 18.819 | ||
| Pfam | 458 | 525 | 68 | 8.9E-24 | ||
| SMART | 464 | 528 | 65 | 2.2E-32 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | RNA binding | Interacting selectively and non-covalently with an RNA molecule or a portion thereof. |
Expression pattern of LotjaGi5g1v0285400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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