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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0286900 |
| Transcript ID | LotjaGi5g1v0286900.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Aquaporin-1; TAIR: AT4G10380.1 NOD26-like intrinsic protein 5;1; Swiss-Prot: sp|Q9SV84|NIP51_ARATH Probable aquaporin NIP5-1; TrEMBL-Plants: tr|A9YTW6|A9YTW6_LOTJA Major intrinsic protein NIP5;1; Found in the gene: LotjaGi5g1v0286900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:60359654..60361647) extracted from Lotus japonicus Gifu genome v1.2.
AATTCACGCTCCAGATGAGAGAAGCCTATGTGAGTTAGTTTTTGCATTTCTGAATTGATTCCGATGAAAAAAAGGTGATC CAAACATAAATGTAACATTATGATATGATCAGCATGACCCATAAACATAAATTAGAATTGAGTATTGAAGAATGTTATTT TGGAAATCCTTTTTTACAATTGATTCTAAATTTTAAAAAGTTCGGACAGAATCTACTGTGAGTAGTTTCTTAGTGCCATA ATTGATTCCTAAGATAGATAAGCTGATCCAAACGTACTGTTAATGTGAAACAGATTCTAGCAGAGTTTGTGGGGACTTTC ATACTGATATTTGCAGCAACTGCTGGACCAATAGTGAACAACAAGTACGATGGAGCAGAGGGTCTGATGGGAAATGCAGC TACTGCAGGATTAACAGTGATGTTCATCATCCTCTCCATTGGCCACATCTCTGGTGCACACCTCAACCCTTCCCTCACCA TCGCCTTCGCGGCATTCCGCCATTTCCCGTGGTCTCAAGTGCCGGCATACATAGCAGCACAAGTCTCTGCCTCCATCTGT GCCTGTTTTGCTCTCAAATATGTTTACCATCCTTTCTTGTCTGGTGGAGTCACTGTCCCTACTGTCGACATTGGACAAGC TTTTGCAACTGAGTTTATCATCACTTTTATTCTCATGTTTGTGGTTACTGCTGTTGCTACTGATAGTCGCGCGGTGGGTT GATTGTCACTGCTTCTAGCAATTCATGATCAAATTGCATTTATCATTTGTTTTCCTTTTTGTTAATTTACTTAATGGTCG TGTGCAGGTTGGTGAATTGGCAGGTATTGCTGTTGGTGCTACAGTTTTGCTCAACATTCTCATATCAGGGTAATCAACTT CCCTTATCTTCACACTTTGTTTCATCATTCATTTGTATTTCTTTAGTAAATTGAGATGGAGGAGATGGAGAAAAGTTTTG GGAAATAGGGAAAGCTCTCATCAAAGAAAAAAGGGTGAGAAACATTAAGGAGGTTCCATTATTGAATCAATTATGAGACC TGAGCTACTGTTAATTTTATATCTAACAATTTAAAGTTCTAATGTTCTATAGCTTACTGTCTAAATTCCAAGGCTATTTA ACGCAATCAATATCAAATCAATGACTTGATACTCAAGGAAACCATAAGAGAAACGCAAGAAGATGTAGTTAATTATCACC TGCTAGCTCCATAATTTCTATCAAACAACACAGACACAGTTAACTTTGACATATCAGCATTTCTGGCAACTTCCCTTCAT AACATATACCATTGCTGAAATCTCAAGGACCAAGGGTATTTATAGAAGCCTAACCAGAAACTAAGAAGTAACTCAACTGA AAACTAATAACAGACTAAGAGATCAGAACCTGCCAAACTAAAACTCTAACTAACAGTATATGTTAGATTTACAGATACCC CCAAGTCCCTAACACATTTTTGATATAAACTTTAAACTGCTGGATGATAACTTATCATTTAAGAATGATTTTATAAAATT GTAACAGAAAGAAAAAGGACACTGTATGATAGAAGAGAAATTAAGCACTACATATTTTTATTTTTAAGGTAGCACTACAT TAATTAATATAAGGGAGTAGTCTGAATAAGTGCTTAAACCCCCTGGCTCAAAAAAATGTTATGTTAGTTTGGAACTTAAC AGTGAGATTTTACAGGTTTTAATTTGAAATCTTTACTTTTATTTTACAAGTAAATAATCTTAGTGTTTTTACAAGTAAAT AATCTTAGTGTTATGTTTATGGATAAACAAATTGTTAGGCCAACAAGTGGAGGTTCCATGAATCCGGTGCGCACCTTGGG ACCAGCCGTTGCAGCAGGAAATTACAAGCATATCTGGATATATTTGGTGGCTCCAACACTTGGTGCTCTTGCTGGTGCTG GTGTTTACACCCTTGTCAAGCTGCGTGATGATGGTGCTGGACCACCACAACAGGTTAGGAGCTTCCGTCGCTAG
CDS sequence (LotjaGi5g1v0286900.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGAGAAGCCTATATTCTAGCAGAGTTTGTGGGGACTTTCATACTGATATTTGCAGCAACTGCTGGACCAATAGTGAA CAACAAGTACGATGGAGCAGAGGGTCTGATGGGAAATGCAGCTACTGCAGGATTAACAGTGATGTTCATCATCCTCTCCA TTGGCCACATCTCTGGTGCACACCTCAACCCTTCCCTCACCATCGCCTTCGCGGCATTCCGCCATTTCCCGTGGTCTCAA GTGCCGGCATACATAGCAGCACAAGTCTCTGCCTCCATCTGTGCCTGTTTTGCTCTCAAATATGTTTACCATCCTTTCTT GTCTGGTGGAGTCACTGTCCCTACTGTCGACATTGGACAAGCTTTTGCAACTGAGTTTATCATCACTTTTATTCTCATGT TTGTGGTTACTGCTGTTGCTACTGATAGTCGCGCGGTTGGTGAATTGGCAGGTATTGCTGTTGGTGCTACAGTTTTGCTC AACATTCTCATATCAGGGCCAACAAGTGGAGGTTCCATGAATCCGGTGCGCACCTTGGGACCAGCCGTTGCAGCAGGAAA TTACAAGCATATCTGGATATATTTGGTGGCTCCAACACTTGGTGCTCTTGCTGGTGCTGGTGTTTACACCCTTGTCAAGC TGCGTGATGATGGTGCTGGACCACCACAACAGGTTAGGAGCTTCCGTCGCTAG
Protein sequence (LotjaGi5g1v0286900.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MREAYILAEFVGTFILIFAATAGPIVNNKYDGAEGLMGNAATAGLTVMFIILSIGHISGAHLNPSLTIAFAAFRHFPWSQ VPAYIAAQVSASICACFALKYVYHPFLSGGVTVPTVDIGQAFATEFIITFILMFVVTAVATDSRAVGELAGIAVGATVLL NILISGPTSGGSMNPVRTLGPAVAAGNYKHIWIYLVAPTLGALAGAGVYTLVKLRDDGAGPPQQVRSFRR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 6 | 6 | - | – | |
| Gene3D | 3 | 221 | 219 | 1.7E-62 | ||
| PRINTS | 4 | 23 | 20 | 1.0E-38 | ||
| Pfam | 6 | 209 | 204 | 4.9E-50 | ||
| SUPERFAMILY | 6 | 215 | 210 | 5.89E-61 | ||
| PANTHER | 7 | 229 | 223 | 6.1E-126 | ||
| Phobius | 7 | 26 | 20 | - | – | |
| PANTHER | 7 | 229 | 223 | 6.1E-126 | – | |
| TMHMM | 7 | 26 | 20 | - | – | |
| Phobius | 27 | 37 | 11 | - | – | |
| Phobius | 38 | 60 | 23 | - | – | |
| TMHMM | 41 | 60 | 20 | - | – | |
| PRINTS | 43 | 67 | 25 | 1.0E-38 | ||
| ProSitePatterns | 61 | 69 | 9 | - | ||
| Phobius | 61 | 80 | 20 | - | – | |
| PRINTS | 80 | 99 | 20 | 1.0E-38 | ||
| Phobius | 81 | 103 | 23 | - | – | |
| TMHMM | 81 | 103 | 23 | - | – | |
| Phobius | 104 | 117 | 14 | - | – | |
| TMHMM | 118 | 140 | 23 | - | – | |
| Phobius | 118 | 139 | 22 | - | – | |
| PRINTS | 124 | 142 | 19 | 1.0E-38 | ||
| Phobius | 140 | 145 | 6 | - | – | |
| TMHMM | 145 | 167 | 23 | - | – | |
| Phobius | 146 | 164 | 19 | - | – | |
| PRINTS | 155 | 177 | 23 | 1.0E-38 | ||
| Phobius | 165 | 190 | 26 | - | – | |
| TMHMM | 190 | 212 | 23 | - | – | |
| Phobius | 191 | 212 | 22 | - | – | |
| PRINTS | 192 | 212 | 21 | 1.0E-38 | ||
| Phobius | 213 | 230 | 18 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Channel activity | Enables the energy-independent facilitated diffusion, mediated by passage of a solute through a transmembrane aqueous pore or channel. Stereospecificity is not exhibited but this transport may be specific for a particular molecular species or class of molecules. | ||
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of LotjaGi5g1v0286900.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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