Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

LotjaGi5g1v0292900.4

Overview

Field Value
Gene ID LotjaGi5g1v0292900
Transcript ID LotjaGi5g1v0292900.4
Related isoforms 3
Lotus japonicus genome version Gifu v1.2
Description Histidine decarboxylase; TAIR: AT1G43710.1 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein; Swiss-Prot: sp|Q6ESZ9|SDC1_ORYSJ Serine decarboxylase 1; TrEMBL-Plants: tr|A0A151S6Z1|A0A151S6Z1_CAJCA Histidine decarboxylase; Found in the gene: LotjaGi5g1v0292900
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr5:61027208..61030965) extracted from Lotus japonicus Gifu genome v1.2.

CTTATACATATAAATGCAGTGGAAACCACACACCACCATAAACAGAAAATACAGAGTGAAGTTCACAGCTAGCTAGAGAG AAAGCAATTAAAACAGAGAGAGATTCAGAAAGGAGAATCAGATATATATTCGGAGGCAGCCATGAAGGACATGATTCTTG AATCCCTTTTACAAGCAGGTAAGAACTAATTCTCTTCCCCTTCTCTGCATCCTTTAATTTGTTTCTCTTTTTTTCCTTTG GATAAAATCTGTTTTGCATCTATCACTTTTAAACTTAAAATTCTCAGTTTTAGTTTCTAATAAAATTTTATTTAGTTTTA GTCTTATTAAAAACAAATTTATCTTGATTTTAGTCCCTAATGACAATGTCTTTCAATATTCCAGCATTCAAAGAGTATTT ACATAAGGAGGTTCCAAAAATCAAAATGTCCACCCGAGAAGAAGAGAAGAATGGGGAAATCCTAGAAGGACATATGGACC TCGACATCACGAAGTGCTTCGGAGAAACACGAGCCAATTTATCTAAAACGATTGCCAATTATGTGGTGAAGCTAGATCAA AACAAATCACGTTGTTTAGGTATGTAGGATATTTATTGACTTTTCTAATTGATTTGTGTATTTATCATACTTTTTTTTAT TCGATATAGCAAGCATTGATCCCAAAGTAAATATCCACAAATTTGTGTACTGTTTTCGCTAACATTATCCACGACCGCAG GATTCCCTGTTAACCAGGAATTTGACTATGATGCATTGACACCGTTGTTGCATTATCACTTAAATAATGCTGGTGATCCA TTTCTTGGGAGCGGCTATGGTCAAAATTCAGCAGAATTTGAAGTTAGTGTGCTTGACTGGTTTGCCAAACTATGGCAAAT GGAGAAGGGTGAATATTGGGGATATGTTACAACAGGTGGAACCGAAGGAAACTTACATGGAATTTTAATGGGGTAAGTTT TTGTTGAATTTCAATTCTAGAAAGCCTTTTGAAATTTTACTATTAAGTAGAAATAATGCTTCTTGTATAGGTTTATGCAT ATTCCAAACAAGATCGTTAAATATCGTCTTTATTATCTGTAGGAGGGAAAAATTTCAAGATGGGATTCTATATACCTCAG AGAACTCGCATTATTCATTATTCAAAATTGCAATGATGTACAGAATGCAATGTGTAAAGGTCAACACATTGACCTCTGGC GAGATTGATTGTGCTGATTTAAAGGCTCTACTTCTATCTCACAAGGACAAACCAGTCATCATCAACCTAAACATAGGTAT CTCATCTTTGATAACTTACTTATGTGCACAACATATAATTAATGAGCTTAATCACGCACCCACAATACAACCCCATGTAC AAAATATATACACACTTGGCTAAATCTATATTTCTTTTGTGTACTTAAAATATATAGGAACAACCATGAAAGGAGCTATT GATGACATTGATCTCGTAGTCCAAACACTTGAGGACTGTGGCTACCCTCGTGATCGATTCTATATCCATTGTGATGGAGC TCTTTCTGGAATAATGTTACCATTTCTTAAACAAGTGAGTGAAAATCCTTAACCCTAAATTTTTAAGTTTAATAAAGATA TTACTTTGATGATGGTTCACATACAAAGAACAATAAAAAATTGCAACGAATTATGAATGGCGAAAGTTGCATGCTTCAGA TTAATACAAATTGAAAAAAAAAATATACATGATTCCTTGTTCAATATAACTCATTTTATAAATTGTTTGGATGGTCGTGC AGGCTCCAAGGGTTAACTTCAAGAAGCCCATTGGAAGTATATCTATTTCTGGCCATAAGTTCTTAGGATGTCCAATTCCT TGTGGTGTTATATTAACATGTTCAGAACATGTCAATGCTCTTTCTAGAGACGTTGAATACATTGAATCAAGGGATGTCAC AATCACAGGTAGTCGATGTGGGCTTGCAGCAATCTACCTCTGGTATGCTCTCCAAGAAAGAGGTTTAATCGGACTTAAGA GAGAAGCACAAATGTGCATCACAAGTGCACAGTACTTACTGGATAAACTACATGATAATGGTATTGGTGCAATGCGAAAT GAGTTTAGTAATACAGTTTTATTTGAAAGACCTCCAGATGATGACTTTGTGCGAAAGTGGAATTTGTCTTGTGAAGGAAA TATTGCACATGTGGTTGTGATGCAACATGTCAAAATTGAAATGCTAGACTCATTTGTAAGTGAACTTGTTAACAAACGGA AAGTTTGGTTTCAAGGCGGACAGAAAAAGTCTCCTTGCATCGCGAACAATGTTGGTGGGAAAAATTGTGCTTGTGCACTG CATAATTATTCATTTTGACAGGGAATGCCTTGGATATTACAAATGTAATTGACAAGATGGATGTACTCATGAATTGTTAT ACTTCCTTTTATAAATATTCTTAGATATAATGCTAGATGACATTATACTACATACCTAAACAACGCAATTTGTTTTGATA TAGCATCACCACGTATTTGGCAATTATTTTAGCTAAATTGGCACGTGTCTCCCCGTTACTTTTCGTGATAGCGAGGCTCA TATCTCTTCTATTCTCTTGAATTTCTCCATTCTCTTCTTCTCTAGAGGGTTTATCAACTTTTTGAACCACCTGAAGTAAA TAGTCTTTGGATGCTGAAATATTGCAAGACATTGTCATGAGTCACTACAAAAAAAACGTTTTTTAGTGGGGTTTTTTTCT TGCAATTAGTGGGGGTTTTCAACCCCCGCGAGTTACTTAGCAGGGGTTTTGAAAAATCCCGAAGTTACACTCGCCACAAA TTATTAGCGGCGTTTTTCAGCAAACCCTGGTACCTGCATATACATTTAGCGGCGTTTTTTAGCGGGGGTTTTAAACCTCC CTTATCCGCAAGCTTTTTTTAACGGGAGTTTTCAACCCCCTTAAATGCAAGAGATTATTTACAGCTTTAAACTTGCCTTG GCTACCAAAGTTTATTCTAGGGACATTTTTAACCTAGAATAAGAGCCAATTGACACATTACAAATTGAACATCATAGAAA AAATAACAGCAGAGAGAAGGGATAAGGAATCCATAACAATGAAGATGCATGATTTTGGTGATGATGTGCGACCCTTTGTA AGGTTCCCTGTGAGCAATACCTTGAAGGTATTGCATGTCATAGAAATCAAAGATGCAATAAGTTAAGTAGCATTACCTCT ACCAATTATGGCAATTGAAGGGAGAGTCAGTAGCTAGGGTGCTTGTCCAAAAACATCAACAGACAAAGGTCTAGTACATA ATAAAACCAATGTTGCAGCAACCATAAGCTGCATTCAATAGAAAATCATTCACTTACAGAAAATAACGAAAGCACGGTTT TGACATGTCACTTATAGTATGTTTGCAAATCATTCTACTATTTATCGCAAAGCCAAAACCAATTGTGGGAGAAGCTTATG GGTGACAGAATTGATTCTGAGGAATCGAAATATGTTATTACTTAAAGAGACTTGTATGTAAGCATCAAGTAGTCCAAAGA GTAGTAATAGATACCTTGTCAGCTACGGGATCTAAGAACGCACCAAATGAATATTTTAACTTCATCTGCATTGCAAATAT AGAAAAGACAAGTGATAAACATCTCAAACATGGAACAATGAAAAAGGAATGTCTGGTACGTATTTGAATTCAGTTTGAGT GAGTACCTTGCGAGCAATATAGCCATCAAGACAATCTGTAACCGAAGCAGCAATGAAAATACTTGTAGTAGCTGTTGT
Download Genomic Sequence

CDS sequence (LotjaGi5g1v0292900.4) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGAAGGACATGATTCTTGAATCCCTTTTACAAGCAGCATTCAAAGAGTATTTACATAAGGAGGTTCCAAAAATCAAAAT GTCCACCCGAGAAGAAGAGAAGAATGGGGAAATCCTAGAAGGACATATGGACCTCGACATCACGAAGTGCTTCGGAGAAA CACGAGCCAATTTATCTAAAACGATTGCCAATTATGTGGTGAAGCTAGATCAAAACAAATCACGTTGTTTAGGATTCCCT GTTAACCAGGAATTTGACTATGATGCATTGACACCGTTGTTGCATTATCACTTAAATAATGCTGGTGATCCATTTCTTGG GAGCGGCTATGGTCAAAATTCAGCAGAATTTGAAGTTAGTGTGCTTGACTGGTTTGCCAAACTATGGCAAATGGAGAAGG GTGAATATTGGGGATATGTTACAACAGGTGGAACCGAAGGAAACTTACATGGAATTTTAATGGGGAGGGAAAAATTTCAA GATGGGATTCTATATACCTCAGAGAACTCGCATTATTCATTATTCAAAATTGCAATGATGTACAGAATGCAATGTGTAAA GGTCAACACATTGACCTCTGGCGAGATTGATTGTGCTGATTTAAAGGCTCTACTTCTATCTCACAAGGACAAACCAGTCA TCATCAACCTAAACATAGGAACAACCATGAAAGGAGCTATTGATGACATTGATCTCGTAGTCCAAACACTTGAGGACTGT GGCTACCCTCGTGATCGATTCTATATCCATTGTGATGGAGCTCTTTCTGGAATAATGTTACCATTTCTTAAACAAGCTCC AAGGGTTAACTTCAAGAAGCCCATTGGAAGTATATCTATTTCTGGCCATAAGTTCTTAGGATGTCCAATTCCTTGTGGTG TTATATTAACATGTTCAGAACATGTCAATGCTCTTTCTAGAGACGTTGAATACATTGAATCAAGGGATGTCACAATCACA GGTAGTCGATGTGGGCTTGCAGCAATCTACCTCTGGTATGCTCTCCAAGAAAGAGGTTTAATCGGACTTAAGAGAGAAGC ACAAATGTGCATCACAAGTGCACAGTACTTACTGGATAAACTACATGATAATGGTATTGGTGCAATGCGAAATGAGTTTA GTAATACAGTTTTATTTGAAAGACCTCCAGATGATGACTTTGTGCGAAAGTGGAATTTGTCTTGTGAAGGAAATATTGCA CATGTGGTTGTGATGCAACATGTCAAAATTGAAATGCTAGACTCATTTGTAAGTGAACTTGTTAACAAACGGAAAGTTTG GTTTCAAGGCGGACAGAAAAAGTCTCCTTGCATCGCGAACAATGTTGGTGGGAAAAATTGTGCTTGTGCACTGCATAATT ATTCATTTTGA
Download CDS Sequence

Protein sequence (LotjaGi5g1v0292900.4) extracted from Lotus japonicus Gifu v1.2 Proteins.

MKDMILESLLQAAFKEYLHKEVPKIKMSTREEEKNGEILEGHMDLDITKCFGETRANLSKTIANYVVKLDQNKSRCLGFP VNQEFDYDALTPLLHYHLNNAGDPFLGSGYGQNSAEFEVSVLDWFAKLWQMEKGEYWGYVTTGGTEGNLHGILMGREKFQ DGILYTSENSHYSLFKIAMMYRMQCVKVNTLTSGEIDCADLKALLLSHKDKPVIINLNIGTTMKGAIDDIDLVVQTLEDC GYPRDRFYIHCDGALSGIMLPFLKQAPRVNFKKPIGSISISGHKFLGCPIPCGVILTCSEHVNALSRDVEYIESRDVTIT GSRCGLAAIYLWYALQERGLIGLKREAQMCITSAQYLLDKLHDNGIGAMRNEFSNTVLFERPPDDDFVRKWNLSCEGNIA HVVVMQHVKIEMLDSFVSELVNKRKVWFQGGQKKSPCIANNVGGKNCACALHNYSF
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR46101
22 454 433 8.9E-224 –
PANTHER
PTHR46101:SF6
22 454 433 8.9E-224 –
SUPERFAMILY
SSF53383
74 422 349 2.34E-74
IPR015424
Gene3D
G3DSA:3.40.640.10
104 362 259 4.0E-54
IPR015421
Pfam
PF00282
114 364 251 3.0E-21
IPR002129

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003824
Molecular function Catalytic activity Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
Subterm of
GO:0016831
Molecular function Carboxy-lyase activity Catalysis of the nonhydrolytic addition or removal of a carboxyl group to or from a compound.
Subterm of
GO:0019752
Biological process Carboxylic acid metabolic process The chemical reactions and pathways involving carboxylic acids, any organic acid containing one or more carboxyl (COOH) groups or anions (COO-).
Subterm of
GO:0030170
Molecular function Pyridoxal phosphate binding Interacting selectively and non-covalently with pyridoxal 5' phosphate, 3-hydroxy-5-(hydroxymethyl)-2-methyl4-pyridine carboxaldehyde 5' phosphate, the biologically active form of vitamin B6.
Subterm of

Genome browser

Expression data

Expression pattern

Expression pattern of LotjaGi5g1v0292900.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…