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LotjaGi5g1v0293700.1

Overview

Field Value
Gene ID LotjaGi5g1v0293700
Transcript ID LotjaGi5g1v0293700.1
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description RING/FYVE/PHD zinc finger protein, putative; TAIR: AT1G43770.2 RING/FYVE/PHD zinc finger superfamily protein; Swiss-Prot: sp|Q96T23|RSF1_HUMAN Remodeling and spacing factor 1; TrEMBL-Plants: tr|A0A1J7I1P5|A0A1J7I1P5_LUPAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0293700
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr5:61110596..61115615) extracted from Lotus japonicus Gifu genome v1.2.

CTAAATATCCTCAAAACGACCTACATTCTCCAATCTTATTCATCTTGATTCCAATCAAAAATATTTTATATCAAGAAATA AATTATTTTCTAAAATTTCAAAAATATTTCCTTCCTTTATATATTTCAATCAATTCTGTGATTAACTTTCGGAGTCCTTT CTGGCTTCCCACGTCCAATTCATTCACAGTGGGTTGGGTTCGTACGGTGTCGTACAGAGCTTCTGTTCTGGCTTCATTCA CGCCCTTCGCTCTTCTTCTAGAACCCTTCACAACACCACATTCCTCAGTTTCGTTTCTTTCATGCCATTATTGAATTGTT GTTGTTTTGATTACTCCCATGTAATGCAGTAACATTTGTTGTGTTTGTTTCATAGATCAGGATAGCACAGTTTCAGTGGC ATTCTAGAAGTTCAGTGTCTGCTGGCAATCCACAATCATGGTATGATTTCAATTTTATACAATTTTTGTTTCTTAAGAGG TATAGTTTTTCAATTTTGGGTTTAATGTAATGGTTTTAGTGGTGAGGTAGATGATGAACTGTTATTTATTTAGACTCAGT GAAGAACCTATAGATTTTGGTTAACTTGGATTTTTCCAAACCAACAATAACAGTTCTGCTAGAATCCTTGCAGCTGGTTT AGCTTATAGCATTAGAAGAATTAATCGATTCGGTACCATTTTAGAGATTCCTTCTGTTTTAAAATTGGGTGAATGTCCAC GTCCAGGGAGGGGCCGGACCCACTTTGTGATCTAATGAAGGTAGCCTTACTTTGCATTTTTGCTAGAGGTTGATTCCACA GCTTGATTGCGCTGAGGATTGCTTTGAAAACTGGGTAAACATGATAATCAAAATTGAAATTAGAGGCGGAAGAATAATTT AGCTTTTTTTGTGACAAGTAAATAGCCTTCTGATCTCAAGCAGAAATGTTGGAGCAAGAAGTGGTGCTAGTTTAGTTAAC TTGTAGGAGTTGTTTTTGCACCAAACATGCATGACTCAAAACTAAACCTATTTAGTGCTTAGAATTCATGGCTTTATAGT GTTTTATAAATGAGTGCATATTTGGAGTTTCACATCGGCTCTTATGAACCATTTCAGTAAAACTCCTACACTACACCTGT TGTAGGAACCTGTTTGTTTCAAGTGTGGTGATAGAGGCTATTCGGAGACATTGGTTTCTTGCAATGAGTGTCAGTCTTAT TCTGTGCATAGGTACTTTTCTCTACTCCTTTTCTCTGCATTATTTGATGCACCTATAGCAAATTTTGTCATCATACTTTG CTACTGATACCACCACCTTTAATTTCACTTGAGCATCCTTTCAAATTTCCATTTGAGAGTTGTAGAGGTGGGAGTGGACT CCCTATAGTTGGAGTATCTGAGGAATACCTGGAACGATACTCATTGCACCTACTGTACCTAATTTGTTTTGGAGTGATGA TTTTTTATGTATCATATGTTATATATAAAGCAGAATAATGATTTTGGGTTTCAGTAAAAGTTTTTTAAAAATTATGATCT ACATTGGTAGCAGGTTATTTTCATCCTCTAAGTAATTTTCTATCTATGCGTATTTTATTAAGTATATTTTGCATTTCTAG TAGGATCTTACCATCCGATCCCGATTTTTATGATGTACAATCTTTCACCCCCCTTCCGATCCTGAGTAGGATCCCGATCC TATAACTTCAGTATCATCCTTAATAGCTATAGATGCCTCTCTTTTTATTGAAATATGGGCATTCTTAAAATTCCTACTCA TATTGAAGGTGAGACAGGGGAGTGGACCATTCCACTACTCCTCGGTTGGGTTAAACCAAAACCAAAAGATTACTGAATAG ATACACAACACGATTAACACCCTGACTTTAAATTGAATCTGACTTTGCCCCCCCGAATGTTGTATAAAATATAAAGTTTG CAATTTATAAAGTTGCAAGTTCATGTTAGCATTGATGACTTCGATTCCTTAGTCGTCCTTTTTTTTTCAGGTACTGTTTA GATGGGCCTGTGATTTTTTATGATGATGTTTCATGGTCTTGTGAGGATTGCAAAGCAAAGCTAGTAGTTCCATATTCACA TGACCAATCTACACCTCTTTCACCTGAAACATGTGACTTTGTGAAGTTGGCTGATGATGCAATTCAAGCCAGCGGAGAAC TAAAACATTGCAATAATAGAGTGGAAATAAGCAATCAAAAGCGACAAAAGAAGCAGAAAAAAGCCGTGAAGAAGAAAGCA AAGGTCCCGTTATCTGATAGTCACAGGTCACCTGAGCTTGGGATCCCTCAATGTAGTATCAACTGCGCAGAAGAAAGCGA GCTTAAAATCAAAAGTGGACCGGTTTCAAGAGATACAAGCAATTCTAATGAAGAGGCCAAATCTGTTCAAGTCGCTCAAG TAACTATCGATGATAATTCAAATTGCGTAGAATCACATTGTCGTGTTGAGGCGCTTCCTATTGCCAATCCAATCTGGCGG TGTGAAATATGTTTTGCTACTTTCAGTTGAAATTCATGAACTTCTATAGCTTTTACAGTAAATATCATCTGAAGTTTAAT TTTCTGGTTCATAGGGGAAGTCTCTACTTCTGCAACAAAACTATTGGTACTGTGACTGTCAATGGACTTGAGGCCTATTT GTCGAGTCTAGCATGCTCCAAAGTTCAGGAGGAGACACTGCTTTTCCCGGAAGTGCTTCGCGCAGATTTGCTTCCGAGAT CTATGGTGTGGCCTAATAGTTTCAAGAACGAGGGGCCAACAGATCAGAGTATCGCTCTTTATTTCTTTCCCAAGAATGAA AGGTGGTTTCCGAGACCGGTTTTACGTGTTGTTACTGGGTTGCTCTTGCTTTAATTTGATATATCTAAGTGATGTTTCCC CTACAGAGATGAGAAAGTCTTTGACAAGCTGGTTGATGACATTATTCAGATTCAACTTGCTATAAGAGTTATAGCTGAAA ATGCAGAGCTTTTAATTTTTCCTTCTACTGTGCTTCCCCCCTCGCATCGAAGTGAGCTTCATTTATTCTCACTCTTTGGT GGCACATTTCAATCTCATTTAAGATTTCATGTTAACATGTGTTATCCTTTGAGCAGGGTTTCAAGCTAAGTATTACTTGT GGGGCGTCTTCAGAAGAAAGCAAACTTTACCAGGGACAAATGATGCTGAGTGCAGAGAGATTGCTGATTTTCACAAGCGC TTAACATGGCATAAACATAGCCAGTCAAATACTTCGAGAAATAGTGGTGGTTATGGTTCTACATAGTACTCTTGTGCTTC TGCTCACTTAATTAACATATACATGAACATGACGATGTTAGGATGAACTTCTTTTTTATCAAAATCAATTATGAAATACT CCCATAAGTTTCTCCCCAAAATTAATTTCGACTTCATAATCAATTGAAGAAGTGTTTCCAAACATGCATTTAACTGCTTA GAAGAGATAATTAGGATTAGAGCAAGTGCCAGGTATGATTTGCTAAAGGCTTGGTCTATTATGTTTCTCATCACAATGTT ACTTCTATCTTTAGAGAGGTTTGGCATGTAACTTTCTGGCTATGTTGAGAAGTTTGAAGGGTGGAGTCTCTGGATTCTTG TGTTCTGGTATTGACTGGTATTTCTAGTTTTCTAAATACATAATTATGATATTGATCTCTTGGAGCAGAGGCCATAGTTG GATCAATGTATAAGATTGTTCAGATAGGTGAAAGTTTATACATAAATGTTTATTGTTCTCATAAAAAAATTGGCAAGTAG TTTTTTAAGAATTAAATACATAACAAAATTTCCCCACTTTTTTTTTTTAAACAATTCACATCATACATCGAGGGAATGAT GAAGCCAGAGTCAGATAATCTGATTCATATCCAACTACCACGTGGTGACCAACATTCCATTCCATGTAAATAGAAAAATG GCAGTAGATACCCATTTGAGTACACATAAAATAAGTAAAACGACAAAAAATAGAGAAGAAAAAGCAATGATAAATGTGGG GTGAATGGTCACTTTCGTCCCTAAAGTTACAAGTGTCGGGCATATTAGTCCTTATTCTTTGAAAATGTCGCTCGTAGTTC CTAATGTTGCACAACGTCAAGCACGTTAGTCCCCGGTTGAGCTCCCGTTAGTGAACGTTAACGGAAATGGTGATTTGGCA CGTTATGTGCCCTTGGGGAATTTCCACACGGATTTAAATATTGGGGAAATTTTTTAGAAAACTTAAAAACTTAAATTTAG TCCCTGGCCAAAATCCCCAAATCAGAAAAGCTTCAAACTCTCCATCATCTTCTTCCTCCTCACATCTAGCCCAGAAAAAA TCAATTCCAGAAAGAAAATTTTTAAATTTGGCCTTGAAGTTCCAGGAATTGTGAAGAAGGATTTGACATTTCTTCCATTT GAAGCACTGCACCACCATGTCTGTTCAACCGTTCTCGCCTCACCCCTTCCCTGTTTTTTTCCCACCATCAAAGTCCATTC ACCTCTAAAAACAATAAGCAAAATACACATTCAATAACCATCAAATCTAACTGAAAGAATTAAAACTTGAAAAGGGAGAA AACAGTGGAAGAATCATTAACCACCACAAACAACAATTTAGCACAAAACCCATTTCACCAATTCGAATGAAATGAAAAAT GGGTAAAAGAAAAAGATTGAGGAGGAAGGTGAAGTGAAGTGGGTCGTCACTCCAACCCTCAGATCCCACTCCCCGCTCTT CCAGGTTAAAAAGGATTTCACTTTTTACCCATTTTCGCCCTAAAAATCCAACCTTTAAGCCTAAGCCTTCTTGTTCTTAC ATATTGCAGAAGGTGGCTCTTGTTAGTTACTTTGAAGCTGTTGGGAAACGAATTAATGTCTCCTCATAAGGGGGATGAAT TTTATGGGTATGGTTGAAGAAGATGGAAGGAGGAGGTTGAAGATGCATCAGAGGTGGAGATGTTTCTGGAATTCTAAGGA AGAAGATGATGGAGAGATTTGAAGTTTTTTTGATTTAGGGATTTTGTTTAGGGACTAAAT
Download Genomic Sequence

CDS sequence (LotjaGi5g1v0293700.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGAACCTGTTTGTTTCAAGTGTGGTGATAGAGGCTATTCGGAGACATTGGTTTCTTGCAATGAGTGTCAGTCTTATTC TGTGCATAGGTACTGTTTAGATGGGCCTGTGATTTTTTATGATGATGTTTCATGGTCTTGTGAGGATTGCAAAGCAAAGC TAGTAGTTCCATATTCACATGACCAATCTACACCTCTTTCACCTGAAACATGTGACTTTGTGAAGTTGGCTGATGATGCA ATTCAAGCCAGCGGAGAACTAAAACATTGCAATAATAGAGTGGAAATAAGCAATCAAAAGCGACAAAAGAAGCAGAAAAA AGCCGTGAAGAAGAAAGCAAAGGTCCCGTTATCTGATAGTCACAGGTCACCTGAGCTTGGGATCCCTCAATGTAGTATCA ACTGCGCAGAAGAAAGCGAGCTTAAAATCAAAAGTGGACCGGTTTCAAGAGATACAAGCAATTCTAATGAAGAGGCCAAA TCTGTTCAAGTCGCTCAAGTAACTATCGATGATAATTCAAATTGCGTAGAATCACATTGTCGTGTTGAGGCGCTTCCTAT TGCCAATCCAATCTGGCGGGGAAGTCTCTACTTCTGCAACAAAACTATTGGTACTGTGACTGTCAATGGACTTGAGGCCT ATTTGTCGAGTCTAGCATGCTCCAAAGTTCAGGAGGAGACACTGCTTTTCCCGGAAGTGCTTCGCGCAGATTTGCTTCCG AGATCTATGGTGTGGCCTAATAGTTTCAAGAACGAGGGGCCAACAGATCAGAGTATCGCTCTTTATTTCTTTCCCAAGAA TGAAAGAGATGAGAAAGTCTTTGACAAGCTGGTTGATGACATTATTCAGATTCAACTTGCTATAAGAGTTATAGCTGAAA ATGCAGAGCTTTTAATTTTTCCTTCTACTGTGCTTCCCCCCTCGCATCGAAGGTTTCAAGCTAAGTATTACTTGTGGGGC GTCTTCAGAAGAAAGCAAACTTTACCAGGGACAAATGATGCTGAGTGCAGAGAGATTGCTGATTTTCACAAGCGCTTAAC ATGGCATAAACATAGCCAGTCAAATACTTCGAGAAATAGTGGTGGTTATGGTTCTACATAG
Download CDS Sequence

Protein sequence (LotjaGi5g1v0293700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MEPVCFKCGDRGYSETLVSCNECQSYSVHRYCLDGPVIFYDDVSWSCEDCKAKLVVPYSHDQSTPLSPETCDFVKLADDA IQASGELKHCNNRVEISNQKRQKKQKKAVKKKAKVPLSDSHRSPELGIPQCSINCAEESELKIKSGPVSRDTSNSNEEAK SVQVAQVTIDDNSNCVESHCRVEALPIANPIWRGSLYFCNKTIGTVTVNGLEAYLSSLACSKVQEETLLFPEVLRADLLP RSMVWPNSFKNEGPTDQSIALYFFPKNERDEKVFDKLVDDIIQIQLAIRVIAENAELLIFPSTVLPPSHRRFQAKYYLWG VFRRKQTLPGTNDAECREIADFHKRLTWHKHSQSNTSRNSGGYGST
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR33304:SF18
1 337 337 2.0E-94 –
PANTHER
PTHR33304
1 337 337 2.0E-94 –
Gene3D
G3DSA:3.30.40.10
1 67 67 6.0E-8
IPR013083
SUPERFAMILY
SSF57903
2 56 55 1.42E-7
IPR011011
SMART
SM00249
4 51 48 7.4E-5
IPR001965
ProSitePatterns
PS01359
5 50 46 -
IPR019786
MobiDBLite
mobidb-lite
98 125 28 - –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

Genome browser

Expression data

Expression pattern

Expression pattern of LotjaGi5g1v0293700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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