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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0293700 |
| Transcript ID | LotjaGi5g1v0293700.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RING/FYVE/PHD zinc finger protein, putative; TAIR: AT1G43770.2 RING/FYVE/PHD zinc finger superfamily protein; Swiss-Prot: sp|Q96T23|RSF1_HUMAN Remodeling and spacing factor 1; TrEMBL-Plants: tr|A0A1J7I1P5|A0A1J7I1P5_LUPAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0293700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:61110597..61114396) extracted from Lotus japonicus Gifu genome v1.2.
TAAATATCCTCAAAACGACCTACATTCTCCAATCTTATTCATCTTGATTCCAATCAAAAATATTTTATATCAAGAAATAA ATTATTTTCTAAAATTTCAAAAATATTTCCTTCCTTTATATATTTCAATCAATTCTGTGATTAACTTTCGGAGTCCTTTC TGGCTTCCCACGTCCAATTCATTCACAGTGGGTTGGGTTCGTACGGTGTCGTACAGAGCTTCTGTTCTGGCTTCATTCAC GCCCTTCGCTCTTCTTCTAGAACCCTTCACAACACCACATTCCTCAGTTTCGTTTCTTTCATGCCATTATTGAATTGTTG TTGTTTTGATTACTCCCATGTAATGCAGTAACATTTGTTGTGTTTGTTTCATAGATCAGGATAGCACAGTTTCAGTGGCA TTCTAGAAGTTCAGTGTCTGCTGGCAATCCACAATCATGGTATGATTTCAATTTTATACAATTTTTGTTTCTTAAGAGGT ATAGTTTTTCAATTTTGGGTTTAATGTAATGGTTTTAGTGGTGAGGTAGATGATGAACTGTTATTTATTTAGACTCAGTG AAGAACCTATAGATTTTGGTTAACTTGGATTTTTCCAAACCAACAATAACAGTTCTGCTAGAATCCTTGCAGCTGGTTTA GCTTATAGCATTAGAAGAATTAATCGATTCGGTACCATTTTAGAGATTCCTTCTGTTTTAAAATTGGGTGAATGTCCACG TCCAGGGAGGGGCCGGACCCACTTTGTGATCTAATGAAGGTAGCCTTACTTTGCATTTTTGCTAGAGGTTGATTCCACAG CTTGATTGCGCTGAGGATTGCTTTGAAAACTGGGTAAACATGATAATCAAAATTGAAATTAGAGGCGGAAGAATAATTTA GCTTTTTTTGTGACAAGTAAATAGCCTTCTGATCTCAAGCAGAAATGTTGGAGCAAGAAGTGGTGCTAGTTTAGTTAACT TGTAGGAGTTGTTTTTGCACCAAACATGCATGACTCAAAACTAAACCTATTTAGTGCTTAGAATTCATGGCTTTATAGTG TTTTATAAATGAGTGCATATTTGGAGTTTCACATCGGCTCTTATGAACCATTTCAGTAAAACTCCTACACTACACCTGTT GTAGGAACCTGTTTGTTTCAAGTGTGGTGATAGAGGCTATTCGGAGACATTGGTTTCTTGCAATGAGTGTCAGTCTTATT CTGTGCATAGGTACTTTTCTCTACTCCTTTTCTCTGCATTATTTGATGCACCTATAGCAAATTTTGTCATCATACTTTGC TACTGATACCACCACCTTTAATTTCACTTGAGCATCCTTTCAAATTTCCATTTGAGAGTTGTAGAGGTGGGAGTGGACTC CCTATAGTTGGAGTATCTGAGGAATACCTGGAACGATACTCATTGCACCTACTGTACCTAATTTGTTTTGGAGTGATGAT TTTTTATGTATCATATGTTATATATAAAGCAGAATAATGATTTTGGGTTTCAGTAAAAGTTTTTTAAAAATTATGATCTA CATTGGTAGCAGGTTATTTTCATCCTCTAAGTAATTTTCTATCTATGCGTATTTTATTAAGTATATTTTGCATTTCTAGT AGGATCTTACCATCCGATCCCGATTTTTATGATGTACAATCTTTCACCCCCCTTCCGATCCTGAGTAGGATCCCGATCCT ATAACTTCAGTATCATCCTTAATAGCTATAGATGCCTCTCTTTTTATTGAAATATGGGCATTCTTAAAATTCCTACTCAT ATTGAAGGTGAGACAGGGGAGTGGACCATTCCACTACTCCTCGGTTGGGTTAAACCAAAACCAAAAGATTACTGAATAGA TACACAACACGATTAACACCCTGACTTTAAATTGAATCTGACTTTGCCCCCCCGAATGTTGTATAAAATATAAAGTTTGC AATTTATAAAGTTGCAAGTTCATGTTAGCATTGATGACTTCGATTCCTTAGTCGTCCTTTTTTTTTCAGGTACTGTTTAG ATGGGCCTGTGATTTTTTATGATGATGTTTCATGGTCTTGTGAGGATTGCAAAGCAAAGCTAGTAGTTCCATATTCACAT GACCAATCTACACCTCTTTCACCTGAAACATGTGACTTTGTGAAGTTGGCTGATGATGCAATTCAAGCCAGCGGAGAACT AAAACATTGCAATAATAGAGTGGAAATAAGCAATCAAAAGCGACAAAAGAAGCAGAAAAAAGCCGTGAAGAAGAAAGCAA AGGTCCCGTTATCTGATAGTCACAGGTCACCTGAGCTTGGGATCCCTCAATGTAGTATCAACTGCGCAGAAGAAAGCGAG CTTAAAATCAAAAGTGGACCGGTTTCAAGAGATACAAGCAATTCTAATGAAGAGGCCAAATCTGTTCAAGTCGCTCAAGT AACTATCGATGATAATTCAAATTGCGTAGAATCACATTGTCGTGTTGAGGCGCTTCCTATTGCCAATCCAATCTGGCGGT GTGAAATATGTTTTGCTACTTTCAGTTGAAATTCATGAACTTCTATAGCTTTTACAGTAAATATCATCTGAAGTTTAATT TTCTGGTTCATAGGGGAAGTCTCTACTTCTGCAACAAAACTATTGGTACTGTGACTGTCAATGGACTTGAGGCCTATTTG TCGAGTCTAGCATGCTCCAAAGTTCAGGAGGAGACACTGCTTTTCCCGGAAGTGCTTCGCGCAGATTTGCTTCCGAGATC TATGGTGTGGCCTAATAGTTTCAAGAACGAGGGGCCAACAGATCAGAGTATCGCTCTTTATTTCTTTCCCAAGAATGAAA GGTGGTTTCCGAGACCGGTTTTACGTGTTGTTACTGGGTTGCTCTTGCTTTAATTTGATATATCTAAGTGATGTTTCCCC TACAGAGATGAGAAAGTCTTTGACAAGCTGGTTGATGACATTATTCAGATTCAACTTGCTATAAGAGTTATAGCTGAAAA TGCAGAGCTTTTAATTTTTCCTTCTACTGTGCTTCCCCCCTCGCATCGAAGTGAGCTTCATTTATTCTCACTCTTTGGTG GCACATTTCAATCTCATTTAAGATTTCATGTTAACATGTGTTATCCTTTGAGCAGGGTTTCAAGCTAAGTATTACTTGTG GGGCGTCTTCAGAAGAAAGCAAACTTTACCAGGGACAAATGATGCTGAGTGCAGAGAGATTGCTGATTTTCACAAGCGCT TAACATGGCATAAACATAGCCAGTCAAATACTTCGAGAAATAGTGGTGGTTATGGTTCTACATAGTACTCTTGTGCTTCT GCTCACTTAATTAACATATACATGAACATGACGATGTTAGGATGAACTTCTTTTTTATCAAAATCAATTATGAAATACTC CCATAAGTTTCTCCCCAAAATTAATTTCGACTTCATAATCAATTGAAGAAGTGTTTCCAAACATGCATTTAACTGCTTAG AAGAGATAATTAGGATTAGAGCAAGTGCCAGGTATGATTTGCTAAAGGCTTGGTCTATTATGTTTCTCATCACAATGTTA CTTCTATCTTTAGAGAGGTTTGGCATGTAACTTTCTGGCTATGTTGAGAAGTTTGAAGGGTGGAGTCTCTGGATTCTTGT GTTCTGGTATTGACTGGTATTTCTAGTTTTCTAAATACATAATTATGATATTGATCTCTTGGAGCAGAGGCCATAGTTGG ATCAATGTATAAGATTGTTCAGATAGGTGAAAGTTTATACATAAATGTTTATTGTTCTCATAAAAAAATTGGCAAGTAGT TTTTTAAGAATTAAATACATAACAAAATTTCCCCACTTTT
CDS sequence (LotjaGi5g1v0293700.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAACCTGTTTGTTTCAAGTGTGGTGATAGAGGCTATTCGGAGACATTGGTTTCTTGCAATGAGTGTCAGTCTTATTC TGTGCATAGGTACTGTTTAGATGGGCCTGTGATTTTTTATGATGATGTTTCATGGTCTTGTGAGGATTGCAAAGCAAAGC TAGTAGTTCCATATTCACATGACCAATCTACACCTCTTTCACCTGAAACATGTGACTTTGTGAAGTTGGCTGATGATGCA ATTCAAGCCAGCGGAGAACTAAAACATTGCAATAATAGAGTGGAAATAAGCAATCAAAAGCGACAAAAGAAGCAGAAAAA AGCCGTGAAGAAGAAAGCAAAGGTCCCGTTATCTGATAGTCACAGGTCACCTGAGCTTGGGATCCCTCAATGTAGTATCA ACTGCGCAGAAGAAAGCGAGCTTAAAATCAAAAGTGGACCGGTTTCAAGAGATACAAGCAATTCTAATGAAGAGGCCAAA TCTGTTCAAGTCGCTCAAGTAACTATCGATGATAATTCAAATTGCGTAGAATCACATTGTCGTGTTGAGGCGCTTCCTAT TGCCAATCCAATCTGGCGGGGAAGTCTCTACTTCTGCAACAAAACTATTGGTACTGTGACTGTCAATGGACTTGAGGCCT ATTTGTCGAGTCTAGCATGCTCCAAAGTTCAGGAGGAGACACTGCTTTTCCCGGAAGTGCTTCGCGCAGATTTGCTTCCG AGATCTATGGTGTGGCCTAATAGTTTCAAGAACGAGGGGCCAACAGATCAGAGTATCGCTCTTTATTTCTTTCCCAAGAA TGAAAGAGATGAGAAAGTCTTTGACAAGCTGGTTGATGACATTATTCAGATTCAACTTGCTATAAGAGTTATAGCTGAAA ATGCAGAGCTTTTAATTTTTCCTTCTACTGTGCTTCCCCCCTCGCATCGAAGGTTTCAAGCTAAGTATTACTTGTGGGGC GTCTTCAGAAGAAAGCAAACTTTACCAGGGACAAATGATGCTGAGTGCAGAGAGATTGCTGATTTTCACAAGCGCTTAAC ATGGCATAAACATAGCCAGTCAAATACTTCGAGAAATAGTGGTGGTTATGGTTCTACATAG
Protein sequence (LotjaGi5g1v0293700.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEPVCFKCGDRGYSETLVSCNECQSYSVHRYCLDGPVIFYDDVSWSCEDCKAKLVVPYSHDQSTPLSPETCDFVKLADDA IQASGELKHCNNRVEISNQKRQKKQKKAVKKKAKVPLSDSHRSPELGIPQCSINCAEESELKIKSGPVSRDTSNSNEEAK SVQVAQVTIDDNSNCVESHCRVEALPIANPIWRGSLYFCNKTIGTVTVNGLEAYLSSLACSKVQEETLLFPEVLRADLLP RSMVWPNSFKNEGPTDQSIALYFFPKNERDEKVFDKLVDDIIQIQLAIRVIAENAELLIFPSTVLPPSHRRFQAKYYLWG VFRRKQTLPGTNDAECREIADFHKRLTWHKHSQSNTSRNSGGYGST
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 337 | 337 | 2.0E-94 | – | |
| PANTHER | 1 | 337 | 337 | 2.0E-94 | – | |
| Gene3D | 1 | 67 | 67 | 6.0E-8 | ||
| SUPERFAMILY | 2 | 56 | 55 | 1.42E-7 | ||
| SMART | 4 | 51 | 48 | 7.4E-5 | ||
| ProSitePatterns | 5 | 50 | 46 | - | ||
| MobiDBLite | 98 | 125 | 28 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi5g1v0293700.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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