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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0294100 |
| Transcript ID | LotjaGi5g1v0294100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Acidic chitinase; TAIR: AT5G24090.1 chitinase A; Swiss-Prot: sp|P29024|CHIA_PHAAN Acidic endochitinase; TrEMBL-Plants: tr|Q41401|Q41401_SESRO Chitinase homologue; Found in the gene: LotjaGi5g1v0294100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:61158410..61160722) extracted from Lotus japonicus Gifu genome v1.2.
CCCATTTCCTCTTTTCTATTTAATCATTGCATAATATTCCATGTATAATGAAATGCGATGCGCGTCTGTTGTAAGCGGAT ATCCTTATTCGAATAATATTCCATTCAAACATTATTAAATTCACTTCCATTTGGTGAAATAAGAAAAAAATGAAAGAGAA ATGAAAGATATATGATAGATGTGATAAGAATAGAATAGAAAGATAAAAAAAAAAAAGAGTTAAAATGTAATAATATAAAG GTAGAGGTGTGAATAAATCATTACTCCAACTTATTTAAAAGAAGCTAGCAACACACGAAAAATGCAAAGATAACATCAAA TGTAAATAGTATATCATGAGAAATCTCGTGGCATCAAACTAAACCACATAGCCCTCAATTATAAATAGGTTGCTCTTGTT ACTCTTTTAGTCATCAAACTAAACCACATAGCCCTCAATTATATTAATCGATCATGATGATGGCTCCCAAAAGGCAAGCA TTTTCTTTTATCATTTTGTCCCTCTTGGCATTATCCTTCACATCCATCAACGCTGCCAAAGGTGGGATTGCCGTTTACTG GGGCCAGAATGGTGGTGAAGGCACCTTGAGCACCGCATGTGACACCGGAAACTATGAGATTGTGCTCCTTGCTTTCCTCA ACCAGTTCGGCTGCGGCAGAACCCCATCATGGAACTTTGCAGGCCATTGTGGTGACTGGAGTCCCTGTACCAAACTCCAA CCTGACATCGAAAACTGCCAACGAAAAGGCGTCAAAGTGTTCCTCTCTATCGGAGGAGCAATTGGACCCTACTCCCTGTG CTCAGAACAAGATGCACACGAAGTAGCCAACTACCTCTATAAAAATTTCCTTAGCGGCCAATATGGGCCGCTAGGAAGTG TCACATTAGACGGCATTGATTTTGACATCGAAGGCGGTACAAACCTCTACTGGGATGCACTTGCAAGGCACCTCGACGCT TTGAGACACAAAAACAAGTACTTCTCCTTGTCCGCCGCCCCGCAATGTTTCATGCCGGATTACTACCTTGACACAGCTAT CAAAACTGGCCTTTTTGATTATTTGTTTATTCAGTTCTACAACAACCCTCCATGTCAATATGATACATCTAGAGGTGATG CCACTTTGCTTCTTCAATCATGGGCACATTGGACCTCCTATGTTCACCCGAATAACACGGTGTACATGGGACTACCAGCA TCAACCGCTGCGGCTCCAAGTGGCGGTTACATACCGCCGCAAGATCTGATTTCTAAGGTACTTCCTTACATTAAACCAAC TCCCAACTATGGAGGAATTATGCTGTGGGACAGGTTCAATGATGTCCAGAATAACTACAGCAATCAGTTTAAGGATCTTG TTCCAAAATCTGTGTTGGGGTTTGTCACGGCGGTTTCGGATGCGGTATCTGAGTTAGTGGCGGAAGCTTTGAAACGCATC TTACCGAAACAATATTAGAATCTGCAGGATCTGATCAGCAAGTATGTATGGAATAAGTAATCATCACCTGGTGCCTTTGT GAACCCTTGTTTTGATTTCCTAAGTAGTATGTATGTACAAGTATCCAACTACGCGATTCAGAGCATGTGTTTGTTCTCAT GCTCTGGAATTTTAATTTGGACCTGCAGTTCCTTGAGGTTGTGTGTATCTCAAGGTCTTTATCATCGTGAATAAACTTTG GCTTTAGAAAAATAATCACTAACGGTTTGTTTCAAAGTTATATATTATATTATCTTACCCTTTGAAGAGTGACTAGAGAC TACTCCCTTACTCATCTTGATATGTTTGGATGTGTTGCGAGCTACAACATGTTGCTTCTTGGACCACCAAGATATGAGAT TAGGACCTAGAAACAAGGTGACACCAAAAACAGATCTCCTATCATCAACATTATTTGTGGCTTAGTCTCATCAGAAAACA CCTTAAGGGTTAAAGGAAGTGTCTTGGCTGGCTTCGAGTGAAGACCAAAAGATGTTAGAACCCTTGATGTGTAAATGTAT ATAGAAAAACTTTATGTTAAATCATGTTAATTCTAAGTAGATTAATAGAGATGACAGAAAAACCCACACCCGCGAGGCCC GACCAAAACCCAACCCGAAATTTCGGACAAAACCTAATTTCTTTGGGTGTGGGTTGGGTTTGGGTTTCACCCGAATTATA AAACCTATTTGGGTTCGGGTGTGAGATTGATTAAACCCGCACCCAAACCCAAACCCAAACCCGAAGCCTTATGCATGTAA TTACCAGCCCTTATATATATTATTAAAGTTACTAATAAGTAGAGTTTTCTTTAATTAGACATTTAGAATTGGG
CDS sequence (LotjaGi5g1v0294100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATGATGGCTCCCAAAAGGCAAGCATTTTCTTTTATCATTTTGTCCCTCTTGGCATTATCCTTCACATCCATCAACGC TGCCAAAGGTGGGATTGCCGTTTACTGGGGCCAGAATGGTGGTGAAGGCACCTTGAGCACCGCATGTGACACCGGAAACT ATGAGATTGTGCTCCTTGCTTTCCTCAACCAGTTCGGCTGCGGCAGAACCCCATCATGGAACTTTGCAGGCCATTGTGGT GACTGGAGTCCCTGTACCAAACTCCAACCTGACATCGAAAACTGCCAACGAAAAGGCGTCAAAGTGTTCCTCTCTATCGG AGGAGCAATTGGACCCTACTCCCTGTGCTCAGAACAAGATGCACACGAAGTAGCCAACTACCTCTATAAAAATTTCCTTA GCGGCCAATATGGGCCGCTAGGAAGTGTCACATTAGACGGCATTGATTTTGACATCGAAGGCGGTACAAACCTCTACTGG GATGCACTTGCAAGGCACCTCGACGCTTTGAGACACAAAAACAAGTACTTCTCCTTGTCCGCCGCCCCGCAATGTTTCAT GCCGGATTACTACCTTGACACAGCTATCAAAACTGGCCTTTTTGATTATTTGTTTATTCAGTTCTACAACAACCCTCCAT GTCAATATGATACATCTAGAGGTGATGCCACTTTGCTTCTTCAATCATGGGCACATTGGACCTCCTATGTTCACCCGAAT AACACGGTGTACATGGGACTACCAGCATCAACCGCTGCGGCTCCAAGTGGCGGTTACATACCGCCGCAAGATCTGATTTC TAAGGTACTTCCTTACATTAAACCAACTCCCAACTATGGAGGAATTATGCTGTGGGACAGGTTCAATGATGTCCAGAATA ACTACAGCAATCAGTTTAAGGATCTTGTTCCAAAATCTGTGTTGGGGTTTGTCACGGCGGTTTCGGATGCGGTATCTGAG TTAGTGGCGGAAGCTTTGAAACGCATCTTACCGAAACAATATTAG
Protein sequence (LotjaGi5g1v0294100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MMMAPKRQAFSFIILSLLALSFTSINAAKGGIAVYWGQNGGEGTLSTACDTGNYEIVLLAFLNQFGCGRTPSWNFAGHCG DWSPCTKLQPDIENCQRKGVKVFLSIGGAIGPYSLCSEQDAHEVANYLYKNFLSGQYGPLGSVTLDGIDFDIEGGTNLYW DALARHLDALRHKNKYFSLSAAPQCFMPDYYLDTAIKTGLFDYLFIQFYNNPPCQYDTSRGDATLLLQSWAHWTSYVHPN NTVYMGLPASTAAAPSGGYIPPQDLISKVLPYIKPTPNYGGIMLWDRFNDVQNNYSNQFKDLVPKSVLGFVTAVSDAVSE LVAEALKRILPKQY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 8 | 8 | - | – | |
| Phobius | 1 | 27 | 27 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 27 | 27 | - | – | |
| SignalP_EUK | 1 | 27 | 27 | - | – | |
| SignalP_GRAM_NEGATIVE | 1 | 27 | 27 | - | – | |
| Phobius | 9 | 20 | 12 | - | – | |
| TMHMM | 13 | 35 | 23 | - | – | |
| PANTHER | 14 | 319 | 306 | 8.6E-142 | – | |
| PANTHER | 14 | 319 | 306 | 8.6E-142 | – | |
| Phobius | 21 | 27 | 7 | - | – | |
| Phobius | 28 | 334 | 307 | - | – | |
| SUPERFAMILY | 29 | 299 | 271 | 2.88E-87 | ||
| Gene3D | 30 | 303 | 274 | 7.5E-88 | – | |
| CDD | 30 | 301 | 272 | 9.14217E-134 | – | |
| Pfam | 32 | 290 | 259 | 2.8E-26 | ||
| ProSitePatterns | 145 | 153 | 9 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Hydrolase activity, hydrolyzing O-glycosyl compounds | Catalysis of the hydrolysis of any O-glycosyl bond. | ||
| Biological process | Carbohydrate metabolic process | The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. |
Expression pattern of LotjaGi5g1v0294100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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