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LotjaGi5g1v0294200.1

Overview

Field Value
Gene ID LotjaGi5g1v0294200
Transcript ID LotjaGi5g1v0294200.1
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description Acidic endochitinase; TAIR: AT5G24090.1 chitinase A; Swiss-Prot: sp|P19172|CHIA_ARATH Acidic endochitinase; TrEMBL-Plants: tr|I3S5N5|I3S5N5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0294200
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr5:61163574..61165954) extracted from Lotus japonicus Gifu genome v1.2.

AGCATCCATTTCTATGTGTATAAATCCAAATTTTCTATTAATTTCATAAATACGTACATCTGAAACCTTAAATATCATCG TAAACCGACACTTAGTGTATGTTTAGTTTTCATTTCAAACATGTTATAAAAATCTAAGATTACATTAAGTGTATAAATCT CTCTTAATAAATCATTCTTCAATCTTCACACACACCATTCATGAATCCACCTCTTATTCGTTTGGTTGACAATTAACAGA ATGACAAATTGGCATTGGCAGAGAATGAAGGAATGGTAGCCCACAAATTAATTGTCGGAAAAGATAGTTGTTGGCATCTA TAAACCTTTTTGACCTTTGGGTGTCTTTAATTCAAAAGGAAAATACAAAATAAAATGGAATAAAATAAAAGTAATAGTAA ATTTTTTTCTCAATTAACTTAAAATAAAATATCAAATAATTGTTTGTGTCTTTATTGCTCATACCATCAAAACTCTTCCT AAAAGTGCGGCTCTCAAGCATCGAACACTTAACCTAAGGGAAATAAGGAATACATTTTATTTCAATTTAATAAATATCTC TTTATTATTTTTGTCTCTTTCATTTTGAAATACAACTAAATAATGAAATGATATACTTGTATGTTATTCAGTTTTAGCAC TAGTTGACTTTCTCTTGTCAACACCATACTTTTTCAATTAGGAACCATCCTTCATTCCCATTCAAACTTTCAAAGCTTCA AGTTACCTACCATTCATCCTATAAATACCCCAAGTGCAAGGAATCATTCAAAACACACACATACCAACAACAAAAACAGA GCACAAGATGGCCAAAAACTCCCATGCTCTGTTTTCTGCTCTGTTTTTTGTCCTCCTGATCGGAGCCTCCCATGCCGGTG GCGGCATAGCCATCTACTGGGGCCAAAACGGCAACGAGGGAACCCTCTCTGAAGCCTGCGCCACCGGAAAATACTCCCAT GTCATCATAGCCTTCCTCAACAAGTTCGGCAATGGCCAAACCCCTGAAATGAACCTCGCCGGTCACTGCAACCCAGCTAC CAACTCCTGCACCAAGTTCAGTGCAGACATCAAGGACTGCCAGAGAAGAGGAATCAAAGTGCTTCTCTCTATCGGTGGTG GAATCGGAAGCTACTCTCTGTCCTCCCCTAAAGATGCAAGAACAGTTGCAACCTTTTTGTGGAACACTTTCTTAGGGGGC AAGTCAACTTCAAGGCCATTAGGTAATGTTATGGTGTCACTTTAATTTATAGCATATTTGAGCATGATCATAATTTCATA AATATATGTTTATAACCATATTATCTTTCACCCAAAAACTTAATACTCAATTTCGTCGTAAAGGTGGGTTAAATTAATTC TTAGAAAAATAAAACACTCGAGATCTTTGACAGTATCAAATGTATAAAACTAGTCATTGACGTTTTATCCGACCGTAAGG ACTAAATTGATCAATATTTGATACAACCAGAGATCACGAGAAATATGAATTAACTAACACGACTCTCGGGATTCGGGAAC GAGATTTAGTTTTCACTATTTTTATTATACTCACACTTGAAGAATTCTTAACAGGTGATGCTGTGTTGGATGGCATTGAT TTCGACATTGAACTTGGATCAACACAAAATTGGGAGCATCTTGCACGTTTTCTCAAGGGTTATGGAAAAAGAGTGTACCT TGGTGCTGCACCTCAGTGTCCAATTCCTGATAAGTTCTTAGGCACTGCACTTGAAACAGGACTTTTTGACTTTGTTTGGG TTCAGTTCTATAATAATCCTCCATGTCAATATGCTAATGGGAACATCACTAACCTTGTGAATTCATGGAACCGTTGGACG AGTTCTGTTCATGCTGGGAAGATATTTTTGGGGTTGCCGGCGGCTCCGGCGGCGGCGGGAAGCGGTTATATTCCGGCTGA TGTGTTGAGTTCTCAAATATTGCCGGTGATAAAAAAGTCAACGAAGTATGGTGGGGTGATGCTTTGGTCAAGGTTCTATG ATGGGCAGAATGGGTATAGTGATTCCATTATTAGCAGCGTGTGAAGATGAAATAGTGGTTGTAACTTGTAATTGGTCAAT GATTTCGTATTCATAGTTAAGTTGTTTTTTTTTTGTTACATATATTCATAGTTAAGTTGTGATTTCAAGTAGTTGAAGTA TTGAATATTTTGCCATTTTTAATGGGTCTCTTCATCCAATTAAAAGTTGCCGCCCTTAATGTTAGAAATAAAAATAATGG AAAATGAATGAGGATTTCTCTTATTATTGACCTTTTTTTTATAAGCTCTTATTATTGTCTTTTTTCCTATAAGCTCTTAT TATTGACTTATGATCATATTTCTTGCATACTAAATTCTGTTCACAGCATTTTAAAATAAGT 

CDS sequence (LotjaGi5g1v0294200.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCCAAAAACTCCCATGCTCTGTTTTCTGCTCTGTTTTTTGTCCTCCTGATCGGAGCCTCCCATGCCGGTGGCGGCAT AGCCATCTACTGGGGCCAAAACGGCAACGAGGGAACCCTCTCTGAAGCCTGCGCCACCGGAAAATACTCCCATGTCATCA TAGCCTTCCTCAACAAGTTCGGCAATGGCCAAACCCCTGAAATGAACCTCGCCGGTCACTGCAACCCAGCTACCAACTCC TGCACCAAGTTCAGTGCAGACATCAAGGACTGCCAGAGAAGAGGAATCAAAGTGCTTCTCTCTATCGGTGGTGGAATCGG AAGCTACTCTCTGTCCTCCCCTAAAGATGCAAGAACAGTTGCAACCTTTTTGTGGAACACTTTCTTAGGGGGCAAGTCAA CTTCAAGGCCATTAGGTGATGCTGTGTTGGATGGCATTGATTTCGACATTGAACTTGGATCAACACAAAATTGGGAGCAT CTTGCACGTTTTCTCAAGGGTTATGGAAAAAGAGTGTACCTTGGTGCTGCACCTCAGTGTCCAATTCCTGATAAGTTCTT AGGCACTGCACTTGAAACAGGACTTTTTGACTTTGTTTGGGTTCAGTTCTATAATAATCCTCCATGTCAATATGCTAATG GGAACATCACTAACCTTGTGAATTCATGGAACCGTTGGACGAGTTCTGTTCATGCTGGGAAGATATTTTTGGGGTTGCCG GCGGCTCCGGCGGCGGCGGGAAGCGGTTATATTCCGGCTGATGTGTTGAGTTCTCAAATATTGCCGGTGATAAAAAAGTC AACGAAGTATGGTGGGGTGATGCTTTGGTCAAGGTTCTATGATGGGCAGAATGGGTATAGTGATTCCATTATTAGCAGCG TGTGA 

Protein sequence (LotjaGi5g1v0294200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MAKNSHALFSALFFVLLIGASHAGGGIAIYWGQNGNEGTLSEACATGKYSHVIIAFLNKFGNGQTPEMNLAGHCNPATNS CTKFSADIKDCQRRGIKVLLSIGGGIGSYSLSSPKDARTVATFLWNTFLGGKSTSRPLGDAVLDGIDFDIELGSTQNWEH LARFLKGYGKRVYLGAAPQCPIPDKFLGTALETGLFDFVWVQFYNNPPCQYANGNITNLVNSWNRWTSSVHAGKIFLGLP AAPAAAGSGYIPADVLSSQILPVIKKSTKYGGVMLWSRFYDGQNGYSDSIISSV 

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Phobius 1 23 23 -
SignalP_GRAM_NEGATIVE 1 23 23 -
SignalP_EUK 1 23 23 -
Phobius 1 6 6 -
PANTHER 6 294 289 7.6E-158
PANTHER 6 294 289 7.6E-158
Phobius 7 18 12 -
TMHMM 7 29 23 -
Phobius 19 23 5 -
SUPERFAMILY 24 290 267 2.11E-97
Phobius 24 294 271 -
Gene3D 25 294 270 1.1E-100
CDD 25 292 268 7.1246E-131
Pfam 27 281 255 1.1E-27
ProSitePatterns 143 151 9 -

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
Molecular function Hydrolase activity, hydrolyzing O-glycosyl compounds Catalysis of the hydrolysis of any O-glycosyl bond.
Biological process Carbohydrate metabolic process The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.

Expression data

Expression pattern

Expression pattern of LotjaGi5g1v0294200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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