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Field | Value |
---|---|
Gene ID | LotjaGi5g1v0296100 |
Transcript ID | LotjaGi5g1v0296100.2 |
Related isoforms 1 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Retrovirus-related Pol polyprotein from transposon TNT 1-94; TAIR: AT1G21280.1 Copia-like polyprotein/retrotransposon; Swiss-Prot: sp|P04146|COPIA_DROME Copia protein; TrEMBL-Plants: tr|A0A151RE46|A0A151RE46_CAJCA Retrovirus-related Pol polyprotein from transposon TNT 1-94; Found in the gene: LotjaGi5g1v0296100 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:61313053..61318046) extracted from Lotus japonicus Gifu genome v1.2.
TATTAGGAGATAAATTAGGAGGCAAATCAGGAGATGAATTAGGAGACAAATCAGGAAATAATGCTGGGGATACATGCATT TTACCGTTATGATTTGACTTAGTGAGATAGCAAAGGATGTACGTACTGTGCTTGTACTACATCTGTACTACTAACATATT GTTAGCTTAGTAGTATAAAAAGGCTACATCTTCCCCTGTATTCTTATCAACATATTTTATCCCATTCAATTATATTCCAG ATATATATTTTTCCTAGAATCTCTTTATGGTATCAAGAGCAAGAACAAAGTAATTTTTTTTCCGCTGCTGTTCCTACCTT CACCATGGCTACAGATGGAGATGCTGATCAGGGTGCTAAGAAGATTGATAGATCCAAGGAGGACCAGTCTCTAAATCCTA CAAGCCCCTATTATCTCCACCCAGGTGAGAATCCAGGAACAATTATTTCTGATCCACAACTTGTTGATACAAATTATCAT GCTTGGTCTACTAATGTCAAGAGAGCACTGATGTCCAAAAACAAGTACAAATTTGTTGATGGTTCGATCACCGAGCCCAA GAACGATGATCCTCTACACGATGCATGGGAGAGGTGCAATAACATGGTGGTTGCCTGGATCATGAAGACAATCTCTAAAC CCATTGCTCAAAGTGTTGTCTACATTGATGATGCCAAGGAACTTTGGGAAGATTTGAAAGATCGATTCTCCAAAGGTGAT CATTTTCGAGTCTCTGATCTCTTACAGGACATTCATTCTATTCGCCAAGCAGATAGAAGCATGTCTTCTTACTATACTGA ACTCAAGACTCTTTGGGAGGAATTGGAAGCCCTTCGCCCCATTCCGTCTTGCAAGTGCTCGACAAAATGCTCATGTGAGT TAATGGCCGTTACCAAGAAATATAGGGACCAAGAGCATGTTATTTGCTTTCTCAAAGGATTAAACGAGCAATACATTCAT GTGAGGAGCCAAATCTTGATGATGGATGAATTGCCTTCTATCAAGAAAGCTTTCGCAATGATCCTCCAACAAGAAAGGCA ACAGGTTAATTCTGGTTCCACGGAATCTAGAATTCTGGCAGCAGAGGCCAACACTGCTAATGCTAGCAACAATTCTTGGA AAAATCCTGGTGGTAGAGGAAACAACTCATATGGGAATAATCATGGTGGTAGAGGAAGAGGCAGGTCCAATTGGAAAGGA GCTACTGCCATCAACAAGGCTTGTTGTTGCAGCTACTGTGGCAGAGAGGGACACACCATAGATAACTGCTACTTCAAGCA TGGTTTTCCTCCAAACTTCAAATTCAAAAACAAAACCACAAATTCGATTAACGCTGTTGTTGCTGATCAGGATTCACAAA ATCTGGATCATGTTACAAGTCAAAATCAGACACCAGATCCCATTCACAACTTGACACCCCAACAACAAGCTCAAGTTATA GAGTTGATAAACAAAAGTAGCAGTCGTGACTACAATCATTCAGTTCACCAGGTTTCACAAACACAGTCTCTATCTCATCA ACAAAAACCTGGTAATATCCCTAACCTTGGTCTTTGGATTATTGACAGTGGAGCTACTGACCATGTTACCAATTCTATCC ATCATTTTGTTTCCTATAGGTCTATAAAACCTATACAGGTTAAGCTCCCAAATGGTGTTGTTACCTTCTCATATTTTGCA GGGATTATCTCTTTTACAGATGATCTTTATCTGCAAAATGTCTTGTTTATTCCTGAATTTCAGTATAATATCATGTCTAT TAAAAAGATTACTAATGACTTGAATTGCACTATTACTTTCACTAAGAACTCTTGTATTATACAGGATACGATTTCCTCCA AGATGATTGGACAAGCTAAAGTTTCTCAGAGTCTCTACTTTCTTGAGGAACCTAAAAGAATCTGTGTTGCGGTCACTGAT TGGAATATCCAAAATAAGTTTGTTAACATTGCTGAAACAGTTCCTGGTAAAAATGGTAGTCACCCACAATTTGATATGTG GCATTTTAGACTCGGACACCCCTCCAGCAAGGTTTTACAACACATTAGTAAGGTTTTTCCTTATGTAAAACTTCATTCTA ATATCATTTGTGATTTTTGTCATATGGCAAAACAAACTAAGCTTCCTTTCCCTATTAGTGATACTAAGAGTAAAGCTTGC TTTGATCTTGTTCACATGGACATTTGGAGTCCTATTTCCGTTACTTCCATGCATGGTTTTAGATACTTTCTCACTATTGT TGATGATTACTCTAGGTATGTTTGGATTTATCTTATGAAAACTAAAAACGAAGCCAGAAATTTAATTGAAGAGTTCATTA CCTTGATTCAAAACCAGTTTGAGAAAACTATTAAATGCATAAGAAGTGACAATGGAAGTGAATTTGTTATGCACCCATCT TTTACCAAACATGGTATCATTCACCAAACCTCTTGTGTTGAGACCCCTCAACAGAACTCTATTGTTGAGAGAAAACATAG GCATATCTTGAATGTTACAAGAGCCTTAATGTTTCATTCTTATTTGCCTAAAAATTTGTGGACTTTTGCTGTTAAACATG CTGCCTATTTGATCAATAGACTACCATCACCGCTTTTAAAGGGCCAGTGCCCTTATCAATTCCTTAATAATGACTCTCCT ACTTTATTAGACTTAAAAGTTTTTGGTAGCCTTTGTTATTCTTCTACTCTTACTCACAATAGGCAGAAACTTGATCCTAG AGCCCGCAAATGTGTTTTCCTTGGTTTTAAAACTGGAACTAAAGGCTATATTGTTATGGATCTTTTTACCAGACAAATTT TTGTTAACAGAAATGTGATTTTCTATGAAAATCAATTTCCTTTAAAACCCTCTATTACTGATTATTCCAATGTTGACACG TCTGACAATTTTTTTGATTTTACCATGACTGATAATCTACCTCCAAACAATCACGTGCATGATTGTGATGTCCCTCATGA TAAACAAAGTGCTTCCTCGGATAATACTACTATTATTGCAGAAAACCAACTTGAACAACATGTTAGAAAGTCTACTAGAT CTAGGCATTCCCCTAGCTATTTGTCTGATTATCACTGTAATTTTCACTATACTGCTGATCCTGTTGTTGATACTAATGTG ACTTACCCTCTTGAATCTGTTTTGTCTTACAAACAATTGAGACCTCAGTATCTTGCCCATGTTCTTTCCATTTCTTCCAA TATAGAACCTACTTCTTATCATCAGGCTATTAAACATGAACAATGGATTGAAGCCATGAAAAATGAGCTTCATGCCTTAG AACAAAATAAAACTTGGTCTATTGTCCAGCTCCCCCAAGGTAAGAAACCTATCGGTTCTAAGTGGGTTTTCAAAATCAAA TATAAATCTGATGGCTCCATTGAAAGATATAAAGCTAGATTAGTAGCTAAGGGATACAACCAAGTTGAAGGTTTGAATTA TTTTGACACGTTTGCTCCTGTTGCAAAATTAAGTACAGTGAGGCTGCTCCTTGCTATTTCATCTTCTCAAAATTGGCATC TTCACCAACTTGACGTCAACAATGCTTTCCTTCATGGCGACTTGGATGAAGATGTATATATGACTATACCTCAGGGAGTT TCTTCACCTTCTCCAAATAGTGTTTGTAAATTGCATAAATCTTTATATGGGTTAAAGCAAGCCAGTAGACAATGGTTTGC TAAGCTCTCTTCTTACTTGCATATTCTCGGATATATTCAATCTGCTCATGATCACTCTCTTTTCACTAAGTTTCGTGATG CTAGCTTTACAGTTATATTAGTATATGTCGATGACCTAATTTTAGCAGACAATGATCTCAATGAAATTCAATGTGTTAAA AATAAGTTGGATATCCAATTTAGGATTAAGGATTTGGGAACTTTAAAATATTTTCTTGGTTTAGAAGTTGCTAGATCCTC CCGTGGTCTTTTTCTATCCCAACGAAAATATGTTCTTGATTTGCTTGCTAACACTGGTAATCTTGCAGCCAAACCACTGT CCACTCCCATGGTGAAGCCTACATCTACTACAGCTTCTGACAACAGCCCTTATCAAGACATTACTAGTTATAGAAGACTA GTTGGACAATTGCTTTATTTAACTACTACCAGGCCAGAAATTTCCTATGCTGTCCAACAACTTAGTCAACATATGGCTGC TCCTACCAACCAACACTATCAAGCTGCTATCAGGGTCCTCAGGTACCTCAAAGGAGCCCCTGGGCAAGGCCTTTTTTATC CAGCAAACAGCATCCTGCAACTAAAAGCATTCAGCGACTCTGATTGGGGTTCTTGCTTGGAGACTCGAAAGTCTGTCACC GGTTATTGCATTTTCCTTGGTGACTCCCTTGTCTCTTGGAAGTCTAAGAAGCAATCCACTCTTTCTAGATCCTCCTCTGA AGTTGAGTACCGTGCCCTTGCTTCTACAGTATGTGAACTTTAGTGGCTTACCTACATCCTTCAAGATCTTCGTGTTCCTT TCATCTCTCCTTCATTGCTTTACTGCGATAGTCAGTCTGCTAGACATATTGCAACTAATGCTGTGTTTCATGAACGTACT AAACATCTCGACATTGATTGCCATGTTGTTCGGGAAAAGTTGCAAGCAAAGCTCTTTCATCTACTTCCTATTTCAAGTGT TGATCAAACAGCCGACATTTTGACCAAGCCCCTTGAATCTGGACCTTTTTCACACTTAGTTTCCAAGCTGGGAGTTCTCA ATATATACTCCTCAGCTTGTGGGGGGGTATTAGGAGATAAATTAGGAGGCAAATCAGGAGATGAATTAGGAGACAAATCA GGAAATAATGCTGGGGATACATGCATTTTACCGTTATGATTTGACTTAGTGAGATAGCAAAGGATGTACGTACTGTGCTT GTACTACATCTGTACTACTAACATATTGTTAGCTTAGTAGTATAAAAAGGCTACATCTTCCCCTGTATTCTTATCAACAT ATTTTATCCCATTCAATTATATTCCAGATATATA
CDS sequence (LotjaGi5g1v0296100.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTACAGATGGAGATGCTGATCAGGGTGCTAAGAAGATTGATAGATCCAAGGAGGACCAGTCTCTAAATCCTACAAG CCCCTATTATCTCCACCCAGGTGAGAATCCAGGAACAATTATTTCTGATCCACAACTTGTTGATACAAATTATCATGCTT GGTCTACTAATGTCAAGAGAGCACTGATGTCCAAAAACAAGTACAAATTTGTTGATGGTTCGATCACCGAGCCCAAGAAC GATGATCCTCTACACGATGCATGGGAGAGGTGCAATAACATGGTGGTTGCCTGGATCATGAAGACAATCTCTAAACCCAT TGCTCAAAGTGTTGTCTACATTGATGATGCCAAGGAACTTTGGGAAGATTTGAAAGATCGATTCTCCAAAGGTGATCATT TTCGAGTCTCTGATCTCTTACAGGACATTCATTCTATTCGCCAAGCAGATAGAAGCATGTCTTCTTACTATACTGAACTC AAGACTCTTTGGGAGGAATTGGAAGCCCTTCGCCCCATTCCGTCTTGCAAGTGCTCGACAAAATGCTCATGTGAGTTAAT GGCCGTTACCAAGAAATATAGGGACCAAGAGCATGTTATTTGCTTTCTCAAAGGATTAAACGAGCAATACATTCATGTGA GGAGCCAAATCTTGATGATGGATGAATTGCCTTCTATCAAGAAAGCTTTCGCAATGATCCTCCAACAAGAAAGGCAACAG GTTAATTCTGGTTCCACGGAATCTAGAATTCTGGCAGCAGAGGCCAACACTGCTAATGCTAGCAACAATTCTTGGAAAAA TCCTGGTGGTAGAGGAAACAACTCATATGGGAATAATCATGGTGGTAGAGGAAGAGGCAGGTCCAATTGGAAAGGAGCTA CTGCCATCAACAAGGCTTGTTGTTGCAGCTACTGTGGCAGAGAGGGACACACCATAGATAACTGCTACTTCAAGCATGGT TTTCCTCCAAACTTCAAATTCAAAAACAAAACCACAAATTCGATTAACGCTGTTGTTGCTGATCAGGATTCACAAAATCT GGATCATGTTACAAGTCAAAATCAGACACCAGATCCCATTCACAACTTGACACCCCAACAACAAGCTCAAGTTATAGAGT TGATAAACAAAAGTAGCAGTCGTGACTACAATCATTCAGTTCACCAGGTTTCACAAACACAGTCTCTATCTCATCAACAA AAACCTGGTAATATCCCTAACCTTGGTCTTTGGATTATTGACAGTGGAGCTACTGACCATGTTACCAATTCTATCCATCA TTTTGTTTCCTATAGGTCTATAAAACCTATACAGGTTAAGCTCCCAAATGGTGTTGTTACCTTCTCATATTTTGCAGGGA TTATCTCTTTTACAGATGATCTTTATCTGCAAAATGTCTTGTTTATTCCTGAATTTCAGTATAATATCATGTCTATTAAA AAGATTACTAATGACTTGAATTGCACTATTACTTTCACTAAGAACTCTTGTATTATACAGGATACGATTTCCTCCAAGAT GATTGGACAAGCTAAAGTTTCTCAGAGTCTCTACTTTCTTGAGGAACCTAAAAGAATCTGTGTTGCGGTCACTGATTGGA ATATCCAAAATAAGTTTGTTAACATTGCTGAAACAGTTCCTGGTAAAAATGGTAGTCACCCACAATTTGATATGTGGCAT TTTAGACTCGGACACCCCTCCAGCAAGGTTTTACAACACATTAGTAAGCCAAACCACTGTCCACTCCCATGGTGA
Protein sequence (LotjaGi5g1v0296100.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MATDGDADQGAKKIDRSKEDQSLNPTSPYYLHPGENPGTIISDPQLVDTNYHAWSTNVKRALMSKNKYKFVDGSITEPKN DDPLHDAWERCNNMVVAWIMKTISKPIAQSVVYIDDAKELWEDLKDRFSKGDHFRVSDLLQDIHSIRQADRSMSSYYTEL KTLWEELEALRPIPSCKCSTKCSCELMAVTKKYRDQEHVICFLKGLNEQYIHVRSQILMMDELPSIKKAFAMILQQERQQ VNSGSTESRILAAEANTANASNNSWKNPGGRGNNSYGNNHGGRGRGRSNWKGATAINKACCCSYCGREGHTIDNCYFKHG FPPNFKFKNKTTNSINAVVADQDSQNLDHVTSQNQTPDPIHNLTPQQQAQVIELINKSSSRDYNHSVHQVSQTQSLSHQQ KPGNIPNLGLWIIDSGATDHVTNSIHHFVSYRSIKPIQVKLPNGVVTFSYFAGIISFTDDLYLQNVLFIPEFQYNIMSIK KITNDLNCTITFTKNSCIIQDTISSKMIGQAKVSQSLYFLEEPKRICVAVTDWNIQNKFVNIAETVPGKNGSHPQFDMWH FRLGHPSSKVLQHISKPNHCPLPW
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
MobiDBLite | 1 | 35 | 35 | - | – | |
Pfam | 32 | 79 | 48 | 1.4E-12 | ||
PANTHER | 62 | 369 | 308 | 3.2E-75 | – | |
PANTHER | 62 | 369 | 308 | 3.2E-75 | – | |
Pfam | 88 | 241 | 154 | 2.7E-13 | – | |
MobiDBLite | 260 | 287 | 28 | - | – | |
MobiDBLite | 260 | 282 | 23 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi5g1v0296100.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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