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LotjaGi5g1v0300500.2

Overview

Field Value
Gene ID LotjaGi5g1v0300500
Transcript ID LotjaGi5g1v0300500.2
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description Actin-depolymerizing factor family protein; TAIR: AT4G25590.1 actin depolymerizing factor 7; Swiss-Prot: sp|Q67ZM4|ADF7_ARATH Actin-depolymerizing factor 7; TrEMBL-Plants: tr|B9I489|B9I489_POPTR Actin-depolymerizing factor family protein; Found in the gene: LotjaGi5g1v0300500
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr5:61755101..61756419) extracted from Lotus japonicus Gifu genome v1.2.

ATGCTTCTAGTAGTTTTCATATAACATAGCATTTTGAATCACTTTATTTTCCTCATAATCAATTATGACATTCAGAAGCT TAGGTAAGTTTCTTTCGAAAATTGAATTTGTTTTTAGAATAAATTGAAGAAGAATTTTCAAACATACAAATATTACATCA CGAACATGTTATTCTTGTCTTTGAAAATGTGTTCATAGGCGAACGCGGCATCTGGAATGGCTGTTGATGATGAATGTAAA TTGAAGTTCGTGGAGCTAAAGGCAAAGAGGAACTACCGTTTCATTGTGTTTAAGATTGAGAGTCAGGATGTGGTGGTGGA AAAACTTGGAAGTCCAGAAGAAACCTATGATGACTTTGCTGCTTCTCTGCCTCCTGATGAGTGCCGATATGCTGTCTTTG ATTTTGATTTCACCACTAATGAGAACTGCCAGAAAAGCAAGATTTTCTTCATTGCATGGTAATTTCATATTCCTCACCAG CCATTTTTACTGTAGAAAAGCTAATACCATAATGAAGTATAGCATGCTTATTTTATTTGGATTCACTTCAAAATCTGTTT GAATAACTTTTTAGTATATGTTTGGATATGTAGCTGGAAAATTACGGTGAAACTAAAATCATGATATGAATGAACAACCC GAAAAGCTAAAAGAAGTTGTTTATGCCCACCATAATTTTATCTCACTTTTATTTCCCACCGTGTATCCAAACATGCACTT AGAAAATGAAGTTACAATACATAGCCTCTGCCCTTAATGTGTCTGGGTGTGTCTGTCTGTTACACTAACAATTAATAATG TAGATGCTTGAGTGTCATTTTGGACAGTTAATTTTGGCACTAAAATCAGTTCTGCTAGAAACTAGAGAGAGTAGCTTCTG CATTGAACATAATCAATTCGTAAATTCTATATATAAATCACTTCACTTTCAAGTCACTCTTATTATCAAAATCAAATTTT CTCAAAATCACAAACGTTGATCCAAACATGCACTTATTAAGATTAAGGTTGAGGTTGGAGAGGGGTTACTCTCAGTTACT ACTCACGTGCATACATTTTATCTTTCCTATCATGTATTGCCGGATACTTCCATTTTAGAGGTGAAAAAACTGTTTATTGA CATTGCTAATTTGCTATCATGTATGTGCTTGTTTTTTCTGATATTTAGGGCTCCTGATATAGCAAAGGTGAGACACAAGA TGGTGTATGCTAGCTCTAAGGACAGGTTCAAGAGGGAACTTGATGGCGTTCAAGTTGAGTTGCAAGCAACAGATCCTAGC GAGATGAGCCTTGATATCATAAAATCAAGAGCACTATAA
Download Genomic Sequence

CDS sequence (LotjaGi5g1v0300500.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCTGTTGATGATGAATGTAAATTGAAGTTCGTGGAGCTAAAGGCAAAGAGGAACTACCGTTTCATTGTGTTTAAGAT TGAGAGTCAGGATGTGGTGGTGGAAAAACTTGGAAGTCCAGAAGAAACCTATGATGACTTTGCTGCTTCTCTGCCTCCTG ATGAGTGCCGATATGCTGTCTTTGATTTTGATTTCACCACTAATGAGAACTGCCAGAAAAGCAAGATTTTCTTCATTGCA TGGGCTCCTGATATAGCAAAGGTGAGACACAAGATGGTGTATGCTAGCTCTAAGGACAGGTTCAAGAGGGAACTTGATGG CGTTCAAGTTGAGTTGCAAGCAACAGATCCTAGCGAGATGAGCCTTGATATCATAAAATCAAGAGCACTATAA
Download CDS Sequence

Protein sequence (LotjaGi5g1v0300500.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MAVDDECKLKFVELKAKRNYRFIVFKIESQDVVVEKLGSPEETYDDFAASLPPDECRYAVFDFDFTTNENCQKSKIFFIA WAPDIAKVRHKMVYASSKDRFKRELDGVQVELQATDPSEMSLDIIKSRAL
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR11913:SF74
1 129 129 1.0E-93 –
ProSiteProfiles
PS51263
1 130 130 37.822
IPR002108
CDD
cd11286
1 129 129 3.32313E-59
IPR017904
PANTHER
PTHR11913
1 129 129 1.0E-93
IPR017904
Gene3D
G3DSA:3.40.20.10
1 129 129 6.7E-48
IPR029006
SUPERFAMILY
SSF55753
2 128 127 1.81E-42 –
SMART
SM00102
5 130 126 2.0E-57
IPR002108
Pfam
PF00241
7 127 121 3.0E-37
IPR002108

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003779
Molecular function Actin binding Interacting selectively and non-covalently with monomeric or multimeric forms of actin, including actin filaments.
Subterm of
GO:0015629
Cellular component Actin cytoskeleton The part of the cytoskeleton (the internal framework of a cell) composed of actin and associated proteins. Includes actin cytoskeleton-associated complexes.
Subterm of
GO:0030042
Biological process Actin filament depolymerization Disassembly of actin filaments by the removal of actin monomers from a filament.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi5g1v0300500.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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