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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0303400 |
| Transcript ID | LotjaGi5g1v0303400.2 |
| Related isoforms 6 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ankyrin repeat-containing protein, putative; TAIR: AT5G07270.1 hypothetical protein; Swiss-Prot: sp|Q4FE45|XB33_ARATH E3 ubiquitin-protein ligase XBAT33; TrEMBL-Plants: tr|A0A072VPZ6|A0A072VPZ6_MEDTR E3 ubiquitin-protein ligase XBOS33, putative; Found in the gene: LotjaGi5g1v0303400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:62132686..62135089) extracted from Lotus japonicus Gifu genome v1.2.
GTTTCACAGCCTGACTTAACTAGAGTTTCTATTCTTTTATGTTATATTATTGTAATTTATTTACTTTATTCCAGTGCAGT GCCCTGTCCAAGTTCGTAAATAAAGCAGCTGACGGTGGTATCACTGCCCTTCATATGGCTGCGTTAAATGGATACTTGGA TTGTGTACAGCTGCTGCTTGATCTTAATGCAAATTTGTCTGCTGTGACATATCATTATGGAACATCAATGGATTTAATAG GTATGTCTTTTGCAATTTTGTGTAATATGCTAAATATCCCTGAAGGTTGATTTCCCCTTCGACATGACTAAAGTAATTTA ATGTAGGGGCTGGAAGCACTCCATTGCATTATGCTGCTTGTGGGGGCAATTTAAAATGCTGTCAGGCAAGAATTTCTTTA GTTTTGATGTATGATAGTCCTTTGTGAATCTTTCCTTTGAATCTGACAATATTTGTATTCTTTTTCAGATCCTCCTTTCA AGAGGTGCAAGTCGGATGGCTTTGAATTGCAATGGGTAAGATATTGTTAATGTGTATTTTAGTGCAACATATCACATGCT TTATAACATGAGATAAATTTGAATTCCCCCCCTAGGTGGCTTCCTCTTGATATTGCAAGGATGTGGGGTCGTCATTGGCT TGAACCACTACTTGCACCCAGTTCTGATGCCACAGTACCTGCATTCCCTCATTCAAGTTACTTGTCCTTGCCTCTCATGA GTGTGCTCAACATAGCCAGGTATTTTGCCATTCACTGTCTGTTTCTGCATGTCAACCCAACCTTTTTCCATGTGAAAAAT CTATGTAAAAAAATGGTAGAATTTCCTCTGTAGCTACCAGTGGCCGTGGGAAATATTTTTGAAAAAGAATGTTTGAGGGG CTTTATAATGTAAACGATAAAAGTACTTGAGTTAAACAAGCTATGAAAAGTAAAAGAATAGCTGATTCATGAATGCTGAA TGGTAAGCCAATTGAAATGGGGGTAATTATTAGAAAATGAACTCTACATTGGAAATCTGTTTTCCTTTTTTTTGGTTTGT CAGTTTCGTGAGTGAACCTAGAAGTAAGGGAGAAGAACACGGACTAATGGCTGACTGGCTTTCCATTGGTCAATAGGTAT CTTTTGAAAATAACAAGACATATAGCTATAGGCTGTTGTAGTTGGCATTTGATGCACCGTCTGTGTATGTTATCTTTTTT ATTAATGATATAAGAATATTGAAAGTGAAATGAAAAGTTGATTTCCTTGTTTATGGAATGTGTGCAGTTCACTTTTTTTT TGTAAAATACTAAAATTTTCTACAACTAAATCCATATTGCTGTCGGGCTACTTGTTGACTTAAGATGTTAGCTCAGGTAT ATTTTCTAGTAAAATGTTAAGATCACATACATATGTTGAAAATGGGACTAAGATTGATTTGAAATAAATGCAGAGAATGT GGCTTGCAGTCATCTACAGCCTCCTCTGATGAGATTGATTTTTGTGCGGTATGCCTGGAGAGGCCGTGTTCAGTGGCTGC AGAAGGTACAAGATTCTTTATCTTTTGAATATTGTGTGTTTGCCACCTTGCTTGCTTCTGCAAGCGAATATTTAATAAAC TGCAGTAGTTAAATATAGGAACCCATATCCTAACTATTAGTAATTCTGTCAGGACTACTTTCCATAGTCCAAAAAATACA GTCAAAACTAAAATATGTTATTCTAAGAGATCAATAAGTTGCCATCCCATTGCATGTGACCTCCGGAGGGAGGTGGTTTG GGTTATTGTCCTTTGTGAATATGCTTTCTGCCACCTGTCTTTGACGCATTAGAATTTGAAGACCTTATTTAACATTGCAA AACATTTTAAGTGATATCATTAAGTTTTTATATGCAGGATGCAGGCATGAGCTTTGTGTGAGATGTGCACTTTATCTTTG TTCAACAAACAATGTTTCTTCTGAAACACTTTGCACTCCGGGCTCTATCCCTTGCCCCCTTTGTAGACATGGAATTGTCT CTTTTGTTAAGTTACCAGGTTCCCAAACAAAAGAAAATAAATTAAACATGTCTCTTGGCCTGTGTACCCCTTGCATCCTT CATCAGCCATCTCTTTCTCATACACCTGAGATTCAAAGAAACTGTGTAGATTCTGTTCCTTCAGAGATGCTTTGCCCCGT CACTTGTAGTCCATTTCCATCCATGGCAATTCCTCTATGCACCTGCAATGATGGTTCATGTCCATCGTTTGAGCCCCGAG AAGCAGAAACACAAGATGGATCACCTCGTCATTCCCAAGCATCAACAACGGATCAAGATAAAATTGAAGGGCCGAGACTC GATAAAACAACCTGCTCAAGCATGTTTTGGGGTAGAAGGAGTTGCAGCAGGGAACACCAATGCAATTCAGAAATAAATGC TTGA
CDS sequence (LotjaGi5g1v0303400.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTATATTATTGTAATTTATTTACTTTATTCCAGTGCAGTGCCCTGTCCAAGTTCGTAAATAAAGCAGCTGACGGTGG TATCACTGCCCTTCATATGGCTGCGTTAAATGGATACTTGGATTGTGTACAGCTGCTGCTTGATCTTAATGCAAATTTGT CTGCTGTGACATATCATTATGGAACATCAATGGATTTAATAGGGGCTGGAAGCACTCCATTGCATTATGCTGCTTGTGGG GGCAATTTAAAATGCTGTCAGATCCTCCTTTCAAGAGGTGCAAGTCGGATGGCTTTGAATTGCAATGGGTGGCTTCCTCT TGATATTGCAAGGATGTGGGGTCGTCATTGGCTTGAACCACTACTTGCACCCAGTTCTGATGCCACAGTACCTGCATTCC CTCATTCAAGTTACTTGTCCTTGCCTCTCATGAGTGTGCTCAACATAGCCAGAGAATGTGGCTTGCAGTCATCTACAGCC TCCTCTGATGAGATTGATTTTTGTGCGGTATGCCTGGAGAGGCCGTGTTCAGTGGCTGCAGAAGGATGCAGGCATGAGCT TTGTGTGAGATGTGCACTTTATCTTTGTTCAACAAACAATGTTTCTTCTGAAACACTTTGCACTCCGGGCTCTATCCCTT GCCCCCTTTGTAGACATGGAATTGTCTCTTTTGTTAAGTTACCAGGTTCCCAAACAAAAGAAAATAAATTAAACATGTCT CTTGGCCTGTGTACCCCTTGCATCCTTCATCAGCCATCTCTTTCTCATACACCTGAGATTCAAAGAAACTGTGTAGATTC TGTTCCTTCAGAGATGCTTTGCCCCGTCACTTGTAGTCCATTTCCATCCATGGCAATTCCTCTATGCACCTGCAATGATG GTTCATGTCCATCGTTTGAGCCCCGAGAAGCAGAAACACAAGATGGATCACCTCGTCATTCCCAAGCATCAACAACGGAT CAAGATAAAATTGAAGGGCCGAGACTCGATAAAACAACCTGCTCAAGCATGTTTTGGGGTAGAAGGAGTTGCAGCAGGGA ACACCAATGCAATTCAGAAATAAATGCTTGA
Protein sequence (LotjaGi5g1v0303400.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLYYCNLFTLFQCSALSKFVNKAADGGITALHMAALNGYLDCVQLLLDLNANLSAVTYHYGTSMDLIGAGSTPLHYAACG GNLKCCQILLSRGASRMALNCNGWLPLDIARMWGRHWLEPLLAPSSDATVPAFPHSSYLSLPLMSVLNIARECGLQSSTA SSDEIDFCAVCLERPCSVAAEGCRHELCVRCALYLCSTNNVSSETLCTPGSIPCPLCRHGIVSFVKLPGSQTKENKLNMS LGLCTPCILHQPSLSHTPEIQRNCVDSVPSEMLCPVTCSPFPSMAIPLCTCNDGSCPSFEPREAETQDGSPRHSQASTTD QDKIEGPRLDKTTCSSMFWGRRSCSREHQCNSEINA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 8 | 67 | 60 | 3.9E-10 | ||
| PANTHER | 11 | 356 | 346 | 7.8E-193 | – | |
| PANTHER | 11 | 356 | 346 | 7.8E-193 | – | |
| SUPERFAMILY | 20 | 122 | 103 | 2.49E-22 | ||
| ProSiteProfiles | 26 | 110 | 85 | 20.553 | ||
| ProSiteProfiles | 26 | 58 | 33 | 11.861 | ||
| SMART | 26 | 55 | 30 | 1.3E-5 | ||
| Pfam | 27 | 57 | 31 | 1.3E-5 | ||
| Pfam | 63 | 116 | 54 | 2.1E-7 | ||
| Gene3D | 68 | 138 | 71 | 7.6E-12 | ||
| SMART | 69 | 98 | 30 | 2.2E-4 | ||
| ProSiteProfiles | 69 | 101 | 33 | 11.114 | ||
| Gene3D | 151 | 241 | 91 | 9.6E-6 | ||
| SUPERFAMILY | 161 | 224 | 64 | 4.24E-7 | – | |
| ProSiteProfiles | 168 | 218 | 51 | 9.258 | ||
| ProSitePatterns | 183 | 192 | 10 | - | ||
| MobiDBLite | 302 | 330 | 29 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi5g1v0303400.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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