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LotjaGi5g1v0303400.3

Overview

Field Value
Gene ID LotjaGi5g1v0303400
Transcript ID LotjaGi5g1v0303400.3
Related isoforms 6
Lotus japonicus genome version Gifu v1.2
Description Ankyrin repeat-containing protein, putative; TAIR: AT5G07270.1 hypothetical protein; Swiss-Prot: sp|Q4FE45|XB33_ARATH E3 ubiquitin-protein ligase XBAT33; TrEMBL-Plants: tr|A0A072VPZ6|A0A072VPZ6_MEDTR E3 ubiquitin-protein ligase XBOS33, putative; Found in the gene: LotjaGi5g1v0303400
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr5:62132686..62135575) extracted from Lotus japonicus Gifu genome v1.2.

GTGAATGGGCATGTAAGATGTATTAGACTTGTTGTGGCTGACTTTGTTCCAAGTGCTCCTTATGAAGCTCTACATGCAGA TTCTAACAAGGGTGCTGGATCAAATGTGGGAGGCAAACATGAACATAGGTACCCCTTTCCTTTTCATTATGCATTTCACA AAGCAACATACAATTGCAGACTTGCAGTGAATTTCATGTGTTATATTCGTTTGGCTAATGGGGTTATGTCACTGGTATAC TTTTTCTGTCTGTCGTATGCTTGTAATTAAAAATTATTTTCATTGATTTCATCATCAGTATAGTATTTAATTTGTTGCTC ACTTTAGTTTTTCTAATGTGTCTTACATGTGCAATTTTATACTAAGGCACTTCCTACATGAATAAATATTTGGTAAAATT ATTAGTTGCAAAAACTTTGCATAGTTTTGTTGAGAGAATGATGGTTGACATTGAGATTTCATTTGCTGTTATTTTTTATG GAGTATGTTTCACAGCCTGACTTAACTAGAGTTTCTATTCTTTTATGTTATATTATTGTAATTTATTTACTTTATTCCAG TGCAGTGCCCTGTCCAAGTTCGTAAATAAAGCAGCTGACGGTGGTATCACTGCCCTTCATATGGCTGCGTTAAATGGATA CTTGGATTGTGTACAGCTGCTGCTTGATCTTAATGCAAATTTGTCTGCTGTGACATATCATTATGGAACATCAATGGATT TAATAGGTATGTCTTTTGCAATTTTGTGTAATATGCTAAATATCCCTGAAGGTTGATTTCCCCTTCGACATGACTAAAGT AATTTAATGTAGGGGCTGGAAGCACTCCATTGCATTATGCTGCTTGTGGGGGCAATTTAAAATGCTGTCAGGCAAGAATT TCTTTAGTTTTGATGTATGATAGTCCTTTGTGAATCTTTCCTTTGAATCTGACAATATTTGTATTCTTTTTCAGATCCTC CTTTCAAGAGGTGCAAGTCGGATGGCTTTGAATTGCAATGGGTAAGATATTGTTAATGTGTATTTTAGTGCAACATATCA CATGCTTTATAACATGAGATAAATTTGAATTCCCCCCCTAGGTGGCTTCCTCTTGATATTGCAAGGATGTGGGGTCGTCA TTGGCTTGAACCACTACTTGCACCCAGTTCTGATGCCACAGTACCTGCATTCCCTCATTCAAGTTACTTGTCCTTGCCTC TCATGAGTGTGCTCAACATAGCCAGGTATTTTGCCATTCACTGTCTGTTTCTGCATGTCAACCCAACCTTTTTCCATGTG AAAAATCTATGTAAAAAAATGGTAGAATTTCCTCTGTAGCTACCAGTGGCCGTGGGAAATATTTTTGAAAAAGAATGTTT GAGGGGCTTTATAATGTAAACGATAAAAGTACTTGAGTTAAACAAGCTATGAAAAGTAAAAGAATAGCTGATTCATGAAT GCTGAATGGTAAGCCAATTGAAATGGGGGTAATTATTAGAAAATGAACTCTACATTGGAAATCTGTTTTCCTTTTTTTTG GTTTGTCAGTTTCGTGAGTGAACCTAGAAGTAAGGGAGAAGAACACGGACTAATGGCTGACTGGCTTTCCATTGGTCAAT AGGTATCTTTTGAAAATAACAAGACATATAGCTATAGGCTGTTGTAGTTGGCATTTGATGCACCGTCTGTGTATGTTATC TTTTTTATTAATGATATAAGAATATTGAAAGTGAAATGAAAAGTTGATTTCCTTGTTTATGGAATGTGTGCAGTTCACTT TTTTTTTGTAAAATACTAAAATTTTCTACAACTAAATCCATATTGCTGTCGGGCTACTTGTTGACTTAAGATGTTAGCTC AGGTATATTTTCTAGTAAAATGTTAAGATCACATACATATGTTGAAAATGGGACTAAGATTGATTTGAAATAAATGCAGA GAATGTGGCTTGCAGTCATCTACAGCCTCCTCTGATGAGATTGATTTTTGTGCGGTATGCCTGGAGAGGCCGTGTTCAGT GGCTGCAGAAGGTACAAGATTCTTTATCTTTTGAATATTGTGTGTTTGCCACCTTGCTTGCTTCTGCAAGCGAATATTTA ATAAACTGCAGTAGTTAAATATAGGAACCCATATCCTAACTATTAGTAATTCTGTCAGGACTACTTTCCATAGTCCAAAA AATACAGTCAAAACTAAAATATGTTATTCTAAGAGATCAATAAGTTGCCATCCCATTGCATGTGACCTCCGGAGGGAGGT GGTTTGGGTTATTGTCCTTTGTGAATATGCTTTCTGCCACCTGTCTTTGACGCATTAGAATTTGAAGACCTTATTTAACA TTGCAAAACATTTTAAGTGATATCATTAAGTTTTTATATGCAGGATGCAGGCATGAGCTTTGTGTGAGATGTGCACTTTA TCTTTGTTCAACAAACAATGTTTCTTCTGAAACACTTTGCACTCCGGGCTCTATCCCTTGCCCCCTTTGTAGACATGGAA TTGTCTCTTTTGTTAAGTTACCAGGTTCCCAAACAAAAGAAAATAAATTAAACATGTCTCTTGGCCTGTGTACCCCTTGC ATCCTTCATCAGCCATCTCTTTCTCATACACCTGAGATTCAAAGAAACTGTGTAGATTCTGTTCCTTCAGAGATGCTTTG CCCCGTCACTTGTAGTCCATTTCCATCCATGGCAATTCCTCTATGCACCTGCAATGATGGTTCATGTCCATCGTTTGAGC CCCGAGAAGCAGAAACACAAGATGGATCACCTCGTCATTCCCAAGCATCAACAACGGATCAAGATAAAATTGAAGGGCCG AGACTCGATAAAACAACCTGCTCAAGCATGTTTTGGGGTAGAAGGAGTTGCAGCAGGGAACACCAATGCAATTCAGAAAT AAATGCTTGA
Download Genomic Sequence

CDS sequence (LotjaGi5g1v0303400.3) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCTGCGTTAAATGGATACTTGGATTGTGTACAGCTGCTGCTTGATCTTAATGCAAATTTGTCTGCTGTGACATATCA TTATGGAACATCAATGGATTTAATAGGGGCTGGAAGCACTCCATTGCATTATGCTGCTTGTGGGGGCAATTTAAAATGCT GTCAGATCCTCCTTTCAAGAGGTGCAAGTCGGATGGCTTTGAATTGCAATGGGTGGCTTCCTCTTGATATTGCAAGGATG TGGGGTCGTCATTGGCTTGAACCACTACTTGCACCCAGTTCTGATGCCACAGTACCTGCATTCCCTCATTCAAGTTACTT GTCCTTGCCTCTCATGAGTGTGCTCAACATAGCCAGAGAATGTGGCTTGCAGTCATCTACAGCCTCCTCTGATGAGATTG ATTTTTGTGCGGTATGCCTGGAGAGGCCGTGTTCAGTGGCTGCAGAAGGATGCAGGCATGAGCTTTGTGTGAGATGTGCA CTTTATCTTTGTTCAACAAACAATGTTTCTTCTGAAACACTTTGCACTCCGGGCTCTATCCCTTGCCCCCTTTGTAGACA TGGAATTGTCTCTTTTGTTAAGTTACCAGGTTCCCAAACAAAAGAAAATAAATTAAACATGTCTCTTGGCCTGTGTACCC CTTGCATCCTTCATCAGCCATCTCTTTCTCATACACCTGAGATTCAAAGAAACTGTGTAGATTCTGTTCCTTCAGAGATG CTTTGCCCCGTCACTTGTAGTCCATTTCCATCCATGGCAATTCCTCTATGCACCTGCAATGATGGTTCATGTCCATCGTT TGAGCCCCGAGAAGCAGAAACACAAGATGGATCACCTCGTCATTCCCAAGCATCAACAACGGATCAAGATAAAATTGAAG GGCCGAGACTCGATAAAACAACCTGCTCAAGCATGTTTTGGGGTAGAAGGAGTTGCAGCAGGGAACACCAATGCAATTCA GAAATAAATGCTTGA
Download CDS Sequence

Protein sequence (LotjaGi5g1v0303400.3) extracted from Lotus japonicus Gifu v1.2 Proteins.

MAALNGYLDCVQLLLDLNANLSAVTYHYGTSMDLIGAGSTPLHYAACGGNLKCCQILLSRGASRMALNCNGWLPLDIARM WGRHWLEPLLAPSSDATVPAFPHSSYLSLPLMSVLNIARECGLQSSTASSDEIDFCAVCLERPCSVAAEGCRHELCVRCA LYLCSTNNVSSETLCTPGSIPCPLCRHGIVSFVKLPGSQTKENKLNMSLGLCTPCILHQPSLSHTPEIQRNCVDSVPSEM LCPVTCSPFPSMAIPLCTCNDGSCPSFEPREAETQDGSPRHSQASTTDQDKIEGPRLDKTTCSSMFWGRRSCSREHQCNS EINA
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
SMART
SM00248
1 23 23 1900.0
IPR002110
PANTHER
PTHR24128:SF35
1 324 324 8.4E-180 –
Gene3D
G3DSA:1.25.40.20
1 91 91 1.3E-17
IPR036770
PANTHER
PTHR24128
1 324 324 8.4E-180 –
ProSiteProfiles
PS50297
1 78 78 16.6
IPR020683
Pfam
PF12796
2 84 83 7.2E-11
IPR020683
SUPERFAMILY
SSF48403
2 90 89 8.78E-18
IPR036770
SMART
SM00248
37 66 30 2.2E-4
IPR002110
ProSiteProfiles
PS50088
37 69 33 11.114
IPR002110
Gene3D
G3DSA:3.30.40.10
119 208 90 9.9E-6
IPR013083
SUPERFAMILY
SSF57850
135 192 58 3.58E-7 –
ProSiteProfiles
PS50089
136 186 51 9.258
IPR001841
ProSitePatterns
PS00518
151 160 10 -
IPR017907
MobiDBLite
mobidb-lite
270 298 29 - –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005515
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi5g1v0303400.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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