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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0303400 |
| Transcript ID | LotjaGi5g1v0303400.5 |
| Related isoforms 6 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ankyrin repeat-containing protein, putative; TAIR: AT5G07270.1 hypothetical protein; Swiss-Prot: sp|Q4FE45|XB33_ARATH E3 ubiquitin-protein ligase XBAT33; TrEMBL-Plants: tr|A0A072VPZ6|A0A072VPZ6_MEDTR E3 ubiquitin-protein ligase XBOS33, putative; Found in the gene: LotjaGi5g1v0303400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:62132686..62136585) extracted from Lotus japonicus Gifu genome v1.2.
ATGGGAAATTCGTTTGGATGCTCAGCCTCCGGTGAGAGGCTGGTGTCGGCGGCGAGGGACGGCGACTTTGTGGAGGCGAA GATGCTTCTGAACTGCAACCCTTGTCTCGCCAAGTACTCCACCTTTGGTGGCCTCAATTCGCCTCTCCATTTTGCTGCTG CCAAGGGCCACAACGAGGTTGGTTTTTCTCTATTGCCCATTTTCTCTTCTACCTTCGTTTCGCCAAATTTTGTATCTTTT TTCATTTTTGCCATCTGGGTTTCCATTAGATTGTGGCGTTGTTGCTAGAGAATGGAGCTGATGTGAATTCAAGAAATTAT TCTGGACAGGTATGGCTCTCTCTCTCTCTCTCTCTCTCATGTTATGATCATTCGTTTTGAATTGATGAATAAATTGTATG ATATGATTAAAAATGGGTGAGTGAGATGAGATGATTATAGTTGCTGGTCAATTTGCAATACTGGAAGTTTTTTTTTTTGT ATTTGAAATTAGGTGTGTGTTGTCCATTTTGGGTATGATTCTATTCCATGAGGCAAATTGCTGCCTGTTGATTGATGGAT CTGGTGTCAATTTAGTAGATTCCAGCTCAATTGGGTTTCTGGTACATGTGCTGGCTGTACTAATGTGAGAACATGGTTTG CTTTGATACTTGATTTTGCAGACGGCCTTGATGCAAGCTTGTAGATATGGGCACTGGGAAGTTGTACAGACACTTATACT TTACAAATGCAATGTGAGTCCTGTTATTCTTTCAACCATTTCTATCTAAATTGTTTTTCAGTTTCACCAGAACTTTGTAT TTACTATATAGCATGGAGACCATGTGTCATAGGGTTGATTTGAGTCTGAGAAACTACCTACTAAGTGGGAATTCATTACT CTGTTAATGTGCATGTTTTCTTCTGTTCATTGTAAACATTGATATCGAGAATAATAGAGGATATTCTTTAAATGAACAGG TTATGAGAGCAGATTACCTCAGTGGGAGGACAGCTCTTCACTTTGCAGCTGTGAATGGGCATGTAAGATGTATTAGACTT GTTGTGGCTGACTTTGTTCCAAGTGCTCCTTATGAAGCTCTACATGCAGATTCTAACAAGGGTGCTGGATCAAATGTGGG AGGCAAACATGAACATAGGTACCCCTTTCCTTTTCATTATGCATTTCACAAAGCAACATACAATTGCAGACTTGCAGTGA ATTTCATGTGTTATATTCGTTTGGCTAATGGGGTTATGTCACTGGTATACTTTTTCTGTCTGTCGTATGCTTGTAATTAA AAATTATTTTCATTGATTTCATCATCAGTATAGTATTTAATTTGTTGCTCACTTTAGTTTTTCTAATGTGTCTTACATGT GCAATTTTATACTAAGGCACTTCCTACATGAATAAATATTTGGTAAAATTATTAGTTGCAAAAACTTTGCATAGTTTTGT TGAGAGAATGATGGTTGACATTGAGATTTCATTTGCTGTTATTTTTTATGGAGTATGTTTCACAGCCTGACTTAACTAGA GTTTCTATTCTTTTATGTTATATTATTGTAATTTATTTACTTTATTCCAGTGCAGTGCCCTGTCCAAGTTCGTAAATAAA GCAGCTGACGGTGGTATCACTGCCCTTCATATGGCTGCGTTAAATGGATACTTGGATTGTGTACAGCTGCTGCTTGATCT TAATGCAAATTTGTCTGCTGTGACATATCATTATGGAACATCAATGGATTTAATAGGTATGTCTTTTGCAATTTTGTGTA ATATGCTAAATATCCCTGAAGGTTGATTTCCCCTTCGACATGACTAAAGTAATTTAATGTAGGGGCTGGAAGCACTCCAT TGCATTATGCTGCTTGTGGGGGCAATTTAAAATGCTGTCAGGCAAGAATTTCTTTAGTTTTGATGTATGATAGTCCTTTG TGAATCTTTCCTTTGAATCTGACAATATTTGTATTCTTTTTCAGATCCTCCTTTCAAGAGGTGCAAGTCGGATGGCTTTG AATTGCAATGGGTAAGATATTGTTAATGTGTATTTTAGTGCAACATATCACATGCTTTATAACATGAGATAAATTTGAAT TCCCCCCCTAGGTGGCTTCCTCTTGATATTGCAAGGATGTGGGGTCGTCATTGGCTTGAACCACTACTTGCACCCAGTTC TGATGCCACAGTACCTGCATTCCCTCATTCAAGTTACTTGTCCTTGCCTCTCATGAGTGTGCTCAACATAGCCAGGTATT TTGCCATTCACTGTCTGTTTCTGCATGTCAACCCAACCTTTTTCCATGTGAAAAATCTATGTAAAAAAATGGTAGAATTT CCTCTGTAGCTACCAGTGGCCGTGGGAAATATTTTTGAAAAAGAATGTTTGAGGGGCTTTATAATGTAAACGATAAAAGT ACTTGAGTTAAACAAGCTATGAAAAGTAAAAGAATAGCTGATTCATGAATGCTGAATGGTAAGCCAATTGAAATGGGGGT AATTATTAGAAAATGAACTCTACATTGGAAATCTGTTTTCCTTTTTTTTGGTTTGTCAGTTTCGTGAGTGAACCTAGAAG TAAGGGAGAAGAACACGGACTAATGGCTGACTGGCTTTCCATTGGTCAATAGGTATCTTTTGAAAATAACAAGACATATA GCTATAGGCTGTTGTAGTTGGCATTTGATGCACCGTCTGTGTATGTTATCTTTTTTATTAATGATATAAGAATATTGAAA GTGAAATGAAAAGTTGATTTCCTTGTTTATGGAATGTGTGCAGTTCACTTTTTTTTTGTAAAATACTAAAATTTTCTACA ACTAAATCCATATTGCTGTCGGGCTACTTGTTGACTTAAGATGTTAGCTCAGGTATATTTTCTAGTAAAATGTTAAGATC ACATACATATGTTGAAAATGGGACTAAGATTGATTTGAAATAAATGCAGAGAATGTGGCTTGCAGTCATCTACAGCCTCC TCTGATGAGATTGATTTTTGTGCGGTATGCCTGGAGAGGCCGTGTTCAGTGGCTGCAGAAGGTACAAGATTCTTTATCTT TTGAATATTGTGTGTTTGCCACCTTGCTTGCTTCTGCAAGCGAATATTTAATAAACTGCAGTAGTTAAATATAGGAACCC ATATCCTAACTATTAGTAATTCTGTCAGGACTACTTTCCATAGTCCAAAAAATACAGTCAAAACTAAAATATGTTATTCT AAGAGATCAATAAGTTGCCATCCCATTGCATGTGACCTCCGGAGGGAGGTGGTTTGGGTTATTGTCCTTTGTGAATATGC TTTCTGCCACCTGTCTTTGACGCATTAGAATTTGAAGACCTTATTTAACATTGCAAAACATTTTAAGTGATATCATTAAG TTTTTATATGCAGGATGCAGGCATGAGCTTTGTGTGAGATGTGCACTTTATCTTTGTTCAACAAACAATGTTTCTTCTGA AACACTTTGCACTCCGGGCTCTATCCCTTGCCCCCTTTGTAGACATGGAATTGTCTCTTTTGTTAAGTTACCAGGTTCCC AAACAAAAGAAAATAAATTAAACATGTCTCTTGGCCTGTGTACCCCTTGCATCCTTCATCAGCCATCTCTTTCTCATACA CCTGAGATTCAAAGAAACTGTGTAGATTCTGTTCCTTCAGAGATGCTTTGCCCCGTCACTTGTAGTCCATTTCCATCCAT GGCAATTCCTCTATGCACCTGCAATGATGGTTCATGTCCATCGTTTGAGCCCCGAGAAGCAGAAACACAAGATGGATCAC CTCGTCATTCCCAAGCATCAACAACGGATCAAGATAAAATTGAAGGGCCGAGACTCGATAAAACAACCTGCTCAAGCATG TTTTGGGGTAGAAGGAGTTGCAGCAGGGAACACCAATGCAATTCAGAAATAAATGCTTGA
CDS sequence (LotjaGi5g1v0303400.5) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTGCGTTAAATGGATACTTGGATTGTGTACAGCTGCTGCTTGATCTTAATGCAAATTTGTCTGCTGTGACATATCA TTATGGAACATCAATGGATTTAATAGGGGCTGGAAGCACTCCATTGCATTATGCTGCTTGTGGGGGCAATTTAAAATGCT GTCAGATCCTCCTTTCAAGAGGTGCAAGTCGGATGGCTTTGAATTGCAATGGGTGGCTTCCTCTTGATATTGCAAGGATG TGGGGTCGTCATTGGCTTGAACCACTACTTGCACCCAGTTCTGATGCCACAGTACCTGCATTCCCTCATTCAAGTTACTT GTCCTTGCCTCTCATGAGTGTGCTCAACATAGCCAGAGAATGTGGCTTGCAGTCATCTACAGCCTCCTCTGATGAGATTG ATTTTTGTGCGGTATGCCTGGAGAGGCCGTGTTCAGTGGCTGCAGAAGGATGCAGGCATGAGCTTTGTGTGAGATGTGCA CTTTATCTTTGTTCAACAAACAATGTTTCTTCTGAAACACTTTGCACTCCGGGCTCTATCCCTTGCCCCCTTTGTAGACA TGGAATTGTCTCTTTTGTTAAGTTACCAGGTTCCCAAACAAAAGAAAATAAATTAAACATGTCTCTTGGCCTGTGTACCC CTTGCATCCTTCATCAGCCATCTCTTTCTCATACACCTGAGATTCAAAGAAACTGTGTAGATTCTGTTCCTTCAGAGATG CTTTGCCCCGTCACTTGTAGTCCATTTCCATCCATGGCAATTCCTCTATGCACCTGCAATGATGGTTCATGTCCATCGTT TGAGCCCCGAGAAGCAGAAACACAAGATGGATCACCTCGTCATTCCCAAGCATCAACAACGGATCAAGATAAAATTGAAG GGCCGAGACTCGATAAAACAACCTGCTCAAGCATGTTTTGGGGTAGAAGGAGTTGCAGCAGGGAACACCAATGCAATTCA GAAATAAATGCTTGA
Protein sequence (LotjaGi5g1v0303400.5) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAALNGYLDCVQLLLDLNANLSAVTYHYGTSMDLIGAGSTPLHYAACGGNLKCCQILLSRGASRMALNCNGWLPLDIARM WGRHWLEPLLAPSSDATVPAFPHSSYLSLPLMSVLNIARECGLQSSTASSDEIDFCAVCLERPCSVAAEGCRHELCVRCA LYLCSTNNVSSETLCTPGSIPCPLCRHGIVSFVKLPGSQTKENKLNMSLGLCTPCILHQPSLSHTPEIQRNCVDSVPSEM LCPVTCSPFPSMAIPLCTCNDGSCPSFEPREAETQDGSPRHSQASTTDQDKIEGPRLDKTTCSSMFWGRRSCSREHQCNS EINA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SMART | 1 | 23 | 23 | 1900.0 | ||
| PANTHER | 1 | 324 | 324 | 8.4E-180 | – | |
| Gene3D | 1 | 91 | 91 | 1.3E-17 | ||
| PANTHER | 1 | 324 | 324 | 8.4E-180 | – | |
| ProSiteProfiles | 1 | 78 | 78 | 16.6 | ||
| Pfam | 2 | 84 | 83 | 7.2E-11 | ||
| SUPERFAMILY | 2 | 90 | 89 | 8.78E-18 | ||
| SMART | 37 | 66 | 30 | 2.2E-4 | ||
| ProSiteProfiles | 37 | 69 | 33 | 11.114 | ||
| Gene3D | 119 | 208 | 90 | 9.9E-6 | ||
| SUPERFAMILY | 135 | 192 | 58 | 3.58E-7 | – | |
| ProSiteProfiles | 136 | 186 | 51 | 9.258 | ||
| ProSitePatterns | 151 | 160 | 10 | - | ||
| MobiDBLite | 270 | 298 | 29 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi5g1v0303400.5, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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