Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0306000 |
| Transcript ID | LotjaGi5g1v0306000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein family; TAIR: AT3G14330.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q9LUL5|PP229_ARATH Pentatricopeptide repeat-containing protein At3g14330; TrEMBL-Plants: tr|A0A0R0J3I8|A0A0R0J3I8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0306000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:62408321..62410544) extracted from Lotus japonicus Gifu genome v1.2.
CTTATGCAAGCACTACTGACCACCCTTTATTTATCGAAGACATTTGTTTGGACATCTATGTTGAATACCATAAAACATCC TTATGCTTATCATTTCACATGGTGGGTAACATGAACATCACATCCAAAATGGCTAAGTTAACATAGCATCTTCTGTTGCA AAAATCAAATCTCACAAATGGGTCACAACTTAATTTGTTAAGAAAACCCATTCATTCCCTCCATCATGTTCCCCGCCATT TCTCTTCCAACCAACATAACTGTCAAAACCACCATAACCGCCACCGCCACAAACAGTCACCACAACCACAAACCACCACC TCTCAACCCAACCTTGAAATCTCTCTGCAAATCAGGCAAATTGGAAGAAGCTCTTCGCTTGATCGAATCATCAACCCCCA CACCTTACCAAGATGAAGATATCTCCCAGCTCCTCCATCTCTGCATCTCCAGAAAATCCTTGGAACATGGCCAGAAGCTC CACCACCACCTGCTTCACTCTAAAGGAAGAGTCATTGAGAACCCCACCTTGAAAAGCAAGCTCATCACGCTCTACTCCGT TTGCGGCAGACTCGACGAGGCTCGCCGTGTTTTCCAAGACGAGGAGAAGGATCCTCCAGAATCGGTGTGGGTAGCTATGG CTATTGGGTACTCGAGAAACGGGTTATCCAAGGAAGCATTGCTTCTTTACCGCGACATGTTGTCGCGGTCCGTGGAGCCA GGGAATTTCGCGTTTTCCGTGGCCCTCAAGGCGTGTACTGATGTGGGTGATTCGCGGGTCGGGAGAGCAATCCATGCTCA ACTCGCGAAGCGCGATGAAGAGGCTGATCAAGTGGTGAACAATGCGCTTTTGAGATTCTATGTGGAGTGTGGTTGCTCTG GTGATGTCCTTAGGGTGTTTGAGGTAATGCCTCAACGAAATGTGGTGTCGTGGAACACTTTAATTGCGGGTTTTTCTGGT CAAGGTAAAGTGTTTGAGACACTTGATGCTTTTAGAGCTATGCAGCTGAAAGAGGGAATGGGGTTCAGTTGGATTACCCT TACAACTGTGTTGCCGATATGTGCTCAACTTACTGCACTTCATAGTGGTAAGGAGATTCATGGGCAGATTGTGAAGTCCG GGAAGAAAGCTGATAGGCCTTTACTTAATGCACTGATGGACATGTATGCCAAATGTGGATCAATTGGTTATTGTAAAAAA GTGTTTGATGGAATGGAGAGCAAGGATTTGACATCATGGAATACAATGTTGGCTGGATATTCAATCAATGGGCAAATAGA AAAAGCTATAGATTTGTTTGATGAGATGATAAGGTCTAACATTAGACCAGATGGTATTACCTTTGTTTCCTTGCTGTCAG GTTGTAGCCATTCAGGACTTACCAGTGAGGGGCAAAAATTCTTCAATTTGATGCAGGATTATGGGGTGCAACCATCTTTA GAGCATTATGCTTGTTTGGTTGACATATTAGGCAGATCAGGGAAACTTGATGAGGCATTAACTGTGGCAAGAAACATGCC AATGAAACTCAGTGGAAGCATTTGGGGATCATTGCTTAACTCATGCCGGCTTGATGGTAATGTTTCTCTAGCGGAAACAG CTGCGGAGCGGTTGTTTGAGATTGAACCTAACAATGCAGGAAATTACGTGATGCTTTCAAACATATATGCTGATGCAGGA ATGTGGGAAGGTGTGAAGAGAGTTAGAGAAATGATGGCTATAAGGGGGATAAAGAAAGATGCTGGATGCAGTTGGATACA AATAAAGCAGAGGATCCATACATTTGTTGCCGGAGGGAGCTCTGATTTTCGTAGTTCTGCTGAGTATTTAAAAATCTGGA ACGCGTTGTCAAATGCAATTAAGGACTCAGGATATATCCCAAACACTGATGTTGTTCTTCATGATATAAATGAGGAGATG AAGGTAATGTGGGTTTGTGGGCACAGTGAAAGACTTGCAGCAGTTTTTGCACTGATTCACACTGGTGCCGGAATGCCAAT TAGGATTACAAAGAATCTCCGGGTTTGTGTTGATTGTCACTCCTGGATGAAGGCTGTTTCAAGAGTTACAAGGAGACTAA TTGTATTAAGAGATACAAACAGGTTCCACCATTTTGAAAATGGTACTTGTTCCTGTATGGACCACTGGTGATCACCATCA CCATACTGTATTTCACTAATCAATGTCATCAACTATTTATATAGGTTAACATGTTCAAATTTTC
CDS sequence (LotjaGi5g1v0306000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTCCCCGCCATTTCTCTTCCAACCAACATAACTGTCAAAACCACCATAACCGCCACCGCCACAAACAGTCACCACAA CCACAAACCACCACCTCTCAACCCAACCTTGAAATCTCTCTGCAAATCAGGCAAATTGGAAGAAGCTCTTCGCTTGATCG AATCATCAACCCCCACACCTTACCAAGATGAAGATATCTCCCAGCTCCTCCATCTCTGCATCTCCAGAAAATCCTTGGAA CATGGCCAGAAGCTCCACCACCACCTGCTTCACTCTAAAGGAAGAGTCATTGAGAACCCCACCTTGAAAAGCAAGCTCAT CACGCTCTACTCCGTTTGCGGCAGACTCGACGAGGCTCGCCGTGTTTTCCAAGACGAGGAGAAGGATCCTCCAGAATCGG TGTGGGTAGCTATGGCTATTGGGTACTCGAGAAACGGGTTATCCAAGGAAGCATTGCTTCTTTACCGCGACATGTTGTCG CGGTCCGTGGAGCCAGGGAATTTCGCGTTTTCCGTGGCCCTCAAGGCGTGTACTGATGTGGGTGATTCGCGGGTCGGGAG AGCAATCCATGCTCAACTCGCGAAGCGCGATGAAGAGGCTGATCAAGTGGTGAACAATGCGCTTTTGAGATTCTATGTGG AGTGTGGTTGCTCTGGTGATGTCCTTAGGGTGTTTGAGGTAATGCCTCAACGAAATGTGGTGTCGTGGAACACTTTAATT GCGGGTTTTTCTGGTCAAGGTAAAGTGTTTGAGACACTTGATGCTTTTAGAGCTATGCAGCTGAAAGAGGGAATGGGGTT CAGTTGGATTACCCTTACAACTGTGTTGCCGATATGTGCTCAACTTACTGCACTTCATAGTGGTAAGGAGATTCATGGGC AGATTGTGAAGTCCGGGAAGAAAGCTGATAGGCCTTTACTTAATGCACTGATGGACATGTATGCCAAATGTGGATCAATT GGTTATTGTAAAAAAGTGTTTGATGGAATGGAGAGCAAGGATTTGACATCATGGAATACAATGTTGGCTGGATATTCAAT CAATGGGCAAATAGAAAAAGCTATAGATTTGTTTGATGAGATGATAAGGTCTAACATTAGACCAGATGGTATTACCTTTG TTTCCTTGCTGTCAGGTTGTAGCCATTCAGGACTTACCAGTGAGGGGCAAAAATTCTTCAATTTGATGCAGGATTATGGG GTGCAACCATCTTTAGAGCATTATGCTTGTTTGGTTGACATATTAGGCAGATCAGGGAAACTTGATGAGGCATTAACTGT GGCAAGAAACATGCCAATGAAACTCAGTGGAAGCATTTGGGGATCATTGCTTAACTCATGCCGGCTTGATGGTAATGTTT CTCTAGCGGAAACAGCTGCGGAGCGGTTGTTTGAGATTGAACCTAACAATGCAGGAAATTACGTGATGCTTTCAAACATA TATGCTGATGCAGGAATGTGGGAAGGTGTGAAGAGAGTTAGAGAAATGATGGCTATAAGGGGGATAAAGAAAGATGCTGG ATGCAGTTGGATACAAATAAAGCAGAGGATCCATACATTTGTTGCCGGAGGGAGCTCTGATTTTCGTAGTTCTGCTGAGT ATTTAAAAATCTGGAACGCGTTGTCAAATGCAATTAAGGACTCAGGATATATCCCAAACACTGATGTTGTTCTTCATGAT ATAAATGAGGAGATGAAGGTAATGTGGGTTTGTGGGCACAGTGAAAGACTTGCAGCAGTTTTTGCACTGATTCACACTGG TGCCGGAATGCCAATTAGGATTACAAAGAATCTCCGGGTTTGTGTTGATTGTCACTCCTGGATGAAGGCTGTTTCAAGAG TTACAAGGAGACTAATTGTATTAAGAGATACAAACAGGTTCCACCATTTTGAAAATGGTACTTGTTCCTGTATGGACCAC TGGTGA
Protein sequence (LotjaGi5g1v0306000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MFPAISLPTNITVKTTITATATNSHHNHKPPPLNPTLKSLCKSGKLEEALRLIESSTPTPYQDEDISQLLHLCISRKSLE HGQKLHHHLLHSKGRVIENPTLKSKLITLYSVCGRLDEARRVFQDEEKDPPESVWVAMAIGYSRNGLSKEALLLYRDMLS RSVEPGNFAFSVALKACTDVGDSRVGRAIHAQLAKRDEEADQVVNNALLRFYVECGCSGDVLRVFEVMPQRNVVSWNTLI AGFSGQGKVFETLDAFRAMQLKEGMGFSWITLTTVLPICAQLTALHSGKEIHGQIVKSGKKADRPLLNALMDMYAKCGSI GYCKKVFDGMESKDLTSWNTMLAGYSINGQIEKAIDLFDEMIRSNIRPDGITFVSLLSGCSHSGLTSEGQKFFNLMQDYG VQPSLEHYACLVDILGRSGKLDEALTVARNMPMKLSGSIWGSLLNSCRLDGNVSLAETAAERLFEIEPNNAGNYVMLSNI YADAGMWEGVKRVREMMAIRGIKKDAGCSWIQIKQRIHTFVAGGSSDFRSSAEYLKIWNALSNAIKDSGYIPNTDVVLHD INEEMKVMWVCGHSERLAAVFALIHTGAGMPIRITKNLRVCVDCHSWMKAVSRVTRRLIVLRDTNRFHHFENGTCSCMDH W
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| ProSiteProfiles | 29 | 63 | 35 | 5.985 | ||
| Gene3D | 32 | 185 | 154 | 3.0E-17 | ||
| Pfam | 38 | 54 | 17 | 0.36 | ||
| PANTHER | 41 | 187 | 147 | 6.6E-95 | – | |
| ProSiteProfiles | 99 | 129 | 31 | 6.708 | ||
| Pfam | 106 | 124 | 19 | 1.2 | ||
| ProSiteProfiles | 131 | 165 | 35 | 9.58 | ||
| Pfam | 134 | 162 | 29 | 6.6E-4 | ||
| TIGRFAM | 134 | 165 | 32 | 5.7E-4 | ||
| SUPERFAMILY | 142 | 487 | 346 | 7.34E-5 | ||
| Gene3D | 186 | 287 | 102 | 1.1E-11 | ||
| PANTHER | 186 | 289 | 104 | 6.6E-95 | – | |
| ProSiteProfiles | 201 | 231 | 31 | 6.96 | ||
| ProSiteProfiles | 232 | 262 | 31 | 8.21 | ||
| Pfam | 234 | 260 | 27 | 0.015 | ||
| ProSiteProfiles | 268 | 302 | 35 | 5.053 | ||
| PANTHER | 271 | 497 | 227 | 6.6E-95 | – | |
| Gene3D | 288 | 384 | 97 | 6.7E-23 | ||
| ProSiteProfiles | 303 | 333 | 31 | 7.443 | ||
| ProSiteProfiles | 334 | 368 | 35 | 13.274 | ||
| Pfam | 334 | 381 | 48 | 2.1E-13 | ||
| TIGRFAM | 337 | 369 | 33 | 6.4E-10 | ||
| ProSiteProfiles | 369 | 403 | 35 | 10.523 | ||
| TIGRFAM | 371 | 404 | 34 | 0.0013 | ||
| Gene3D | 385 | 571 | 187 | 1.2E-15 | ||
| ProSiteProfiles | 404 | 434 | 31 | 7.432 | ||
| ProSiteProfiles | 470 | 504 | 35 | 7.399 | ||
| Pfam | 507 | 631 | 125 | 2.7E-33 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of LotjaGi5g1v0306000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…