Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0311200 |
| Transcript ID | LotjaGi5g1v0311200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Leucine-rich repeat protein kinase family protein; TAIR: AT3G22800.1 Leucine-rich repeat (LRR) family protein; Swiss-Prot: sp|Q9LUI1|LRX6_ARATH Leucine-rich repeat extensin-like protein 6; TrEMBL-Plants: tr|A0A151U6P3|A0A151U6P3_CAJCA Uncharacterized protein family; Found in the gene: LotjaGi5g1v0311200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:62921950..62923641) extracted from Lotus japonicus Gifu genome v1.2.
CTAAAAAAAGCATAATCATGCATGATTTTATTTGAAAAATGTCAACTTGCAATCCACCAAACTTCCAAAACTTCTTCAAC AACATGCACCATTTATATAAATCCAAGTTCCCATATGACACAAAATCAAACTCACAACCTCTAATGGCCTCTATCTATTC CCTCAAAACAGAAGTCCCTTACAGAATTACACCATTCTTGATCATCCTCATTGTCCTTCTTATCTCCATCAACCCCTCAC ACCAAACTAAAAACCACTCTTCCCCACTCACCCAACTAAACCCAAGGCTCTCAAAAGCTTACATAGCTCTCCAAGCATGG AAGCACTTCATCACCTCTGACCCAAAAAACTTCACCTCCAACTGGCATGGCCCCTATGTCTGCAACTACACTGGAATCTT CTGTGCACCAGCACCAGACAACCCTCACATCTACACCGTCGCCGGAATAGACCTCAACCACGCCGGAATCGCCGGTTCAT TAACGGAAGAACTAGGCCTCTTAACTGACTTAGCTCTCTTACACATAAACTCAAACTCCTTCTATGGCTCCCTCCCTCAC ACCTTCTCCAACCTCCACCTCCTCTTCGAACTCGACATCAGCAACAACAAATTCGCAGGAAAATTCCCAGCAACTCTCCT CTGCCTCCCTTCACTGAAATTCCTCGACATCAGATTCAACAGCTTCCATGGTAACATCCCTTCACGACTCTTCGATCTCA AACTCGATGCTCTGTTCATCAACAACAACAAATTCCAATTCTCGTTACCGGAGAATTTTGCCAACACACCTGCTTCTGTT CTTGTGTTCGCGAACAATGACATCAAGGGTTGTTTGCCGGCGAACTTGGGGAAGATGAAGGGTACGTTGAACGAGATTAT CATCACGAACGGTGGTTTAACCGGTTGTTTGCCGGAGGAGATTGGGGAGCTGGTGAATGTGACGGTGTTTGATGTGAGTT TCAATAGGTTGGTTGGGGAGTTGCCGGAGAGTGTTGGAGAGATGAAGGGGTTGGAGCAGTTGAATGTGGCGGGGAATAAA TTTTCCGGTGAGGTTCCGGCGAGTGTGTGTGGGTTGCCGCGGTTGGAGAATTTTACGTATTCGTTTAACTACTTTTGCAG TGAATCGGAAGCGTGTTTGAAGCTGCGTGAGAAGGATGATCGGAAGAATTGTATTCCGTTTAGGCCGTTGCAGAGGTCGG AGATGGAGTGTAAAGCTTTTTATGCACATCCTGTTGATTGTAGTGCCTTTGGTTGTTCCGTTACAACTGCATCGCCACCA CCACCACCGCCTCCGCCCCCTCCACCGCCGCCTCCCCCTCCGCCTCCTCCTCCACCACCGCCTCCTCCCCCAGCTTACTA TGGTCACTATCTATAATTAGAGCTTGTGATATTTTAGTTTCTTATTTTACCAAAAATTGTCATTTGAATTTTTTTTTGGA GGTATGATTCATCCTCAGGCTTAGTGACTGACATTGTAAAAAAAAACATTTGGAAATGGATTGCTATTTAATTTGTTGAA TAGAAGATTAATTGCTTAAGGAAGATTATCTTTTTCATCAATAACCCTTTGTTCAAATGAGGGTATTTTAATAGATAGTT GAGTTTCTTAAGTATCTAGTTCAGAAATCGATTCATAAGCTGTGCGTATATAAAAAATATTTGTTGAAAAAAAGACTACC AACTTAATATGA
CDS sequence (LotjaGi5g1v0311200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCAACTTGCAATCCACCAAACTTCCAAAACTTCTTCAACAACATGCACCATTTATATAAATCCAAGTTCCCATATGA CACAAAATCAAACTCACAACCTCTAATGGCCTCTATCTATTCCCTCAAAACAGAAGTCCCTTACAGAATTACACCATTCT TGATCATCCTCATTGTCCTTCTTATCTCCATCAACCCCTCACACCAAACTAAAAACCACTCTTCCCCACTCACCCAACTA AACCCAAGGCTCTCAAAAGCTTACATAGCTCTCCAAGCATGGAAGCACTTCATCACCTCTGACCCAAAAAACTTCACCTC CAACTGGCATGGCCCCTATGTCTGCAACTACACTGGAATCTTCTGTGCACCAGCACCAGACAACCCTCACATCTACACCG TCGCCGGAATAGACCTCAACCACGCCGGAATCGCCGGTTCATTAACGGAAGAACTAGGCCTCTTAACTGACTTAGCTCTC TTACACATAAACTCAAACTCCTTCTATGGCTCCCTCCCTCACACCTTCTCCAACCTCCACCTCCTCTTCGAACTCGACAT CAGCAACAACAAATTCGCAGGAAAATTCCCAGCAACTCTCCTCTGCCTCCCTTCACTGAAATTCCTCGACATCAGATTCA ACAGCTTCCATGGTAACATCCCTTCACGACTCTTCGATCTCAAACTCGATGCTCTGTTCATCAACAACAACAAATTCCAA TTCTCGTTACCGGAGAATTTTGCCAACACACCTGCTTCTGTTCTTGTGTTCGCGAACAATGACATCAAGGGTTGTTTGCC GGCGAACTTGGGGAAGATGAAGGGTACGTTGAACGAGATTATCATCACGAACGGTGGTTTAACCGGTTGTTTGCCGGAGG AGATTGGGGAGCTGGTGAATGTGACGGTGTTTGATGTGAGTTTCAATAGGTTGGTTGGGGAGTTGCCGGAGAGTGTTGGA GAGATGAAGGGGTTGGAGCAGTTGAATGTGGCGGGGAATAAATTTTCCGGTGAGGTTCCGGCGAGTGTGTGTGGGTTGCC GCGGTTGGAGAATTTTACGTATTCGTTTAACTACTTTTGCAGTGAATCGGAAGCGTGTTTGAAGCTGCGTGAGAAGGATG ATCGGAAGAATTGTATTCCGTTTAGGCCGTTGCAGAGGTCGGAGATGGAGTGTAAAGCTTTTTATGCACATCCTGTTGAT TGTAGTGCCTTTGGTTGTTCCGTTACAACTGCATCGCCACCACCACCACCGCCTCCGCCCCCTCCACCGCCGCCTCCCCC TCCGCCTCCTCCTCCACCACCGCCTCCTCCCCCAGCTTACTATGGTCACTATCTATAA
Protein sequence (LotjaGi5g1v0311200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSTCNPPNFQNFFNNMHHLYKSKFPYDTKSNSQPLMASIYSLKTEVPYRITPFLIILIVLLISINPSHQTKNHSSPLTQL NPRLSKAYIALQAWKHFITSDPKNFTSNWHGPYVCNYTGIFCAPAPDNPHIYTVAGIDLNHAGIAGSLTEELGLLTDLAL LHINSNSFYGSLPHTFSNLHLLFELDISNNKFAGKFPATLLCLPSLKFLDIRFNSFHGNIPSRLFDLKLDALFINNNKFQ FSLPENFANTPASVLVFANNDIKGCLPANLGKMKGTLNEIIITNGGLTGCLPEEIGELVNVTVFDVSFNRLVGELPESVG EMKGLEQLNVAGNKFSGEVPASVCGLPRLENFTYSFNYFCSESEACLKLREKDDRKNCIPFRPLQRSEMECKAFYAHPVD CSAFGCSVTTASPPPPPPPPPPPPPPPPPPPPPPPPPPAYYGHYL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 45 | 45 | - | – | |
| Phobius | 46 | 64 | 19 | - | – | |
| PANTHER | 60 | 422 | 363 | 7.0E-186 | – | |
| PANTHER | 60 | 422 | 363 | 7.0E-186 | – | |
| Phobius | 65 | 445 | 381 | - | – | |
| Gene3D | 84 | 251 | 168 | 1.1E-32 | ||
| SUPERFAMILY | 87 | 364 | 278 | 6.97E-49 | – | |
| Pfam | 90 | 122 | 33 | 7.8E-4 | ||
| Pfam | 158 | 215 | 58 | 4.3E-7 | ||
| Gene3D | 252 | 380 | 129 | 2.7E-22 | ||
| MobiDBLite | 409 | 445 | 37 | - | – | |
| MobiDBLite | 410 | 445 | 36 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi5g1v0311200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…