Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
Field | Value |
---|---|
Gene ID | LotjaGi5g1v0314000 |
Transcript ID | LotjaGi5g1v0314000.1 |
Lotus japonicus genome version | Gifu v1.2 |
Description | Pentatricopeptide repeat-containing protein; TAIR: AT2G22070.1 pentatricopeptide (PPR) repeat-containing protein; Swiss-Prot: sp|Q9SHZ8|PP168_ARATH Pentatricopeptide repeat-containing protein At2g22070; TrEMBL-Plants: tr|K7K7U2|K7K7U2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0314000 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:63228955..63232945) extracted from Lotus japonicus Gifu genome v1.2.
CTCAAACTGCCAGTAACGAACACTTGATGTTGGTGCAAGCTTCAGGCGCCAATTCAACACACCCTGTTCGTGTTGATGGA GTTCCCAAAACCTCCCTCCCATTCGGAACTATACGTCAATCTTCTCCAATCTGCCATCAAATCCAGAGACCCATTCGTCG GAAGACCCATTCACGCTCAAATCATCAAACACGGCCTCTGCATTGGCAGTGTCTTCTTGATGAACAACCTCCTCAACTTC TATGCACAAACCGGCTCCTTCTCCGATGCTCACCGAGTGTTCGATGAAATGCCACTAAAGACCACCCATTCTTGGAACAC CATTCTCTCCGCTTATGCCAAAGGGGGCCACATGGATACTGCACGCCGCGTGTTTGACGAAATTCCTCAACCGGATTCTG TGTCGTGGACCACGATGATTGTCGGGTATAACCGCGTGGGCCTCTTTAACGTTGCCATTCGGATGTTTCTCAACATGATT TCCTCTGGAGTTTCGCCGACCCAGTTCACTTTTACTAATGTTCTTGCCTCCTGTGCTGCAACTGAAGCATTGGGTATTGG TAGGAAGCTGCATTCCTTCATTGTGAAACTGGGGCAAGCCGGTGTTGTTCCAGTTGCGAATTCGCTGCTTAACATGTATG CTAAGTCAGGTGATTCGGTAATGGCGAATGTTGTTTTCGACCGGATGAGGATCAAAGATAAATCAACTTGGAATAGTATG ATTTCAATGCATATGCAGTTTGGTCGACTTGACCTTGCAGCTGCCCTCTTTGACCAAATGACTGATCGAGATACTGTCTC TTGGAATTCCATTATCACAGGTTACAGCCGTCAGGGATGTGACATCGAGGCCTTGGAAACATTTTCTAGTATGCTTAGGA GTTCATCCTTAAAGCCAGATAATTTTACACTGGGGAGTGTTCTGTCAGCTTGTGCCCATCTTGAAAACTTGAAACTTGGG AAACAAATCCATGCATATATTATAAGAGCCAATATTGACATCTCTGAGGCAGTACAAAATGCGCTGATCTCAATGTATGC AAAATCAGGTGCTGTTGAGATAGCTCTAAGGATAGTAAAACTAACCGGTACTTCGAGTATTAATTTTATAGCACTCACAT CACTGTTGGATGGTTATGTCAAAATTGGGGATGTAATCCTGGCAAGAGAGATATTTGACTCATTAAAACGTCGTGATGTA GTTGTATGGACTGCAATGATTGTAGGTTACACACAGAATGGCTTAATCAGTGATGCTTTGGCGTTCTTTAGGACAATGAT TGGAGAAGGACCAAAGCCGAACAGTCACACCCTGGCAGCGGTATTAAGTGCCTTGGCTTCTCTAGAGCATGGTAAGCAGC TTCATGCAACTGCAATAAGATTGGGAGAAGTATCATCTGTTTCCGTGGGTAATGCTTTAATTACCATGTACTCAAGATCT GGAAGCATCAATGATGCAAGAAAAGTATTTGCACAGATATGCTCCAACAGGGATACAGTGACTTGGGCTTCTATGATTAT TGCTCTTGCTCAACATGGTCTTGGAAACGAGGCAATAGAACTGTTTGAAATGATGCTAAAATCTAACTTAAAGCCTGATC ACATAACTTATGTAGGTGTGCTGTCTGCCTGCACACATGTGGGACTGGTAGAGCAGGGTAAATATTACTTTAATTTGATG AAAATTGTTCATCACATTCAACCCACCCCTAGCCACTATGCATGCATGGTTGACCTATTTGGACGTGCTGGATTGCTTGA AGAAGCATATAATTTTATAAGAAGTATGCCTATTGAACCAGATGTTATAGCTTGGGGTTCACTTTTGTCTTCTTGTAGGA GTCATAAAAATGTGGATTTGGCTAAAGTGGCAGCTGAAAATTTGCTTCTTATTGATCCTAACAATAGTGGGGCTTACTCG GCGCTTGCTAATACACTTTCAGCCTGTGGTAAGTGGGAGGATGCTGCAAAGATTAGGAAGTCAATGAAAGACAGAGCAGT GAAGAAAGAACAAGGAGTCAGTTGGGTTCAAATCCAGAACAAAGTCCATATTTTTGGGGCTGGAGATGCACTTCACCCGC AAAGAGATGCAATCTACAGTATGATTTCGAAAGTATGGAAGGAGATAAAGAAAATGGGCTACACTCCGGACACTGATTCT GTATTGCATGACCTAGAGCAAGAAGTGAAGGAACAAATCCTTAAACATCATAGTGAAAAACTCGCCATTGCATTTGCATT AATAAATACTCCAAAATATACTACGCTGAGGATCATGAAGAACCTTAGAGTTTGTAATGACTGCCATTCCGCCATAAAAT ATATCTCTATGCTTATGGGAAGAGAAATTATAGTAAGAGATGCCACGCGTTTTCATCATTTCAAGGATGGTTTCTGTTCC TGTCAGGATTACTGGTAGAAGAAACAAGTAATGTACATGTATATTCACCTGAGAATAATATAAACACTGACAGGAGCATA AATTTGCCATCACTTCCTATCTGAGTTGACTTTTGACCTTAGGTTTGGCTTCAAATGAATGAGTACAAGAATGTTTATGA GTCCATCAATTGCTTTTATGAACTCCTTTCTATGTATCTTGGAGATGAAATCCTATGTTACCAAATTGGACATATTCAAG AACTCTGGATTTGAGCATATCACTTCAGATAATGCAGCCCTCTGCAAAGGTTACAACTGCTGTCCGTTCATGTTTATTTA TGCCCTATAGTTGACTTTCGATTTCTTTAGTTGCTAGTCTACTAGTGGTAGGCTCGAGGGGAATTTGTTCTATAAGGAGC GCAAGAGCATTTTGGGGGCATAAAAACATGTATTGCTGTCGGTGTGTTGATTCTTTCTGTAAAGTATACAAAGCGATAAG CTGGAAATGTACAACTTCTATATAATACACACATTTTATCTTTAATGTCATTTTCACTCAAATTTTCTTCCTAATCCTAT CTCTCCTATTTTCTGTCATATCACCCATCATATTTCTCACTTCTTTCTTTATTACTATCTCTCTAGGTGTAGGTGGAACA AGCGTGCACACGTTGTTTTCCCAACTAATGTGGATGGTTCAGTAGGAGAGATACAAATAGTGCATGCTACTGCTATGGAG ATCTCTTGCGCAAAGGGGCGAGTGAGTTCATCCGCAATTTTCATCTTAATGACAGTTCAGTTGTGGACTGATGGTGGGTC TTCAGATGCCAAAGTAGATTCAAGTGGACAAATTGAAAGTGGAGTTGGATTCACAAATGGCCCTTAATTTGGTTCGGAAG GATGTCCTCCATTGTTATGCTTTGGTTGGAAATATTAGATTGCTGCTGGAGTCATTGTATTGGGTCATTGTTCTCACTCA AGACTACCATGAAGGAAATTGTGCAAACCCTTTAGTTAGCTTCAGAGAGTCACTTTTTTGCTTGTCACTTCTAAACTGAG CTCTTATCTTCTCTTCACTCACTGCTCAAGTAAACAACATCTAGCACTTTCTCTTTAAAAGGACCTATCCCAAGTGGCAC ACTTCAACGGAAAAGGGACCTATCTCATGTGCAGTAAATCATAAACAACAAAGTTCCTTTAAACCTTTCCCAGACTAATG GGTTTGTTTGGCCACTAAAATTTTCACATCCTTGAAATATCTATTTATATGGCAACGGTATTATTTCTGGGTCAATATCT TATCCACGTCCTTGAAATATCTACCAACTTGACCTCGACTCTACTCTCTAGGGTATGCAGCAGCAAAATCACATGGCGCC GTATTTATGTGCAAGAGTTCATATTTGCCGAACAATGAACGTCATGCCAAAAGATGGACCATTTCTTCATAGCTCCTTTA AAATTCCCACGCAGAGGTCTCAGAGGGGTCATACTTGGTGGTATCGATCAAAATGGAGAACATGAGGGAAGTGGTCCCAC ATTTATGCAATATATACCTCAAATTGACTAAGGTATATATCTCACATCAGAGCTTTTTAGATATCCCCCCC
CDS sequence (LotjaGi5g1v0314000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGTTCCCAAAACCTCCCTCCCATTCGGAACTATACGTCAATCTTCTCCAATCTGCCATCAAATCCAGAGACCCATT CGTCGGAAGACCCATTCACGCTCAAATCATCAAACACGGCCTCTGCATTGGCAGTGTCTTCTTGATGAACAACCTCCTCA ACTTCTATGCACAAACCGGCTCCTTCTCCGATGCTCACCGAGTGTTCGATGAAATGCCACTAAAGACCACCCATTCTTGG AACACCATTCTCTCCGCTTATGCCAAAGGGGGCCACATGGATACTGCACGCCGCGTGTTTGACGAAATTCCTCAACCGGA TTCTGTGTCGTGGACCACGATGATTGTCGGGTATAACCGCGTGGGCCTCTTTAACGTTGCCATTCGGATGTTTCTCAACA TGATTTCCTCTGGAGTTTCGCCGACCCAGTTCACTTTTACTAATGTTCTTGCCTCCTGTGCTGCAACTGAAGCATTGGGT ATTGGTAGGAAGCTGCATTCCTTCATTGTGAAACTGGGGCAAGCCGGTGTTGTTCCAGTTGCGAATTCGCTGCTTAACAT GTATGCTAAGTCAGGTGATTCGGTAATGGCGAATGTTGTTTTCGACCGGATGAGGATCAAAGATAAATCAACTTGGAATA GTATGATTTCAATGCATATGCAGTTTGGTCGACTTGACCTTGCAGCTGCCCTCTTTGACCAAATGACTGATCGAGATACT GTCTCTTGGAATTCCATTATCACAGGTTACAGCCGTCAGGGATGTGACATCGAGGCCTTGGAAACATTTTCTAGTATGCT TAGGAGTTCATCCTTAAAGCCAGATAATTTTACACTGGGGAGTGTTCTGTCAGCTTGTGCCCATCTTGAAAACTTGAAAC TTGGGAAACAAATCCATGCATATATTATAAGAGCCAATATTGACATCTCTGAGGCAGTACAAAATGCGCTGATCTCAATG TATGCAAAATCAGGTGCTGTTGAGATAGCTCTAAGGATAGTAAAACTAACCGGTACTTCGAGTATTAATTTTATAGCACT CACATCACTGTTGGATGGTTATGTCAAAATTGGGGATGTAATCCTGGCAAGAGAGATATTTGACTCATTAAAACGTCGTG ATGTAGTTGTATGGACTGCAATGATTGTAGGTTACACACAGAATGGCTTAATCAGTGATGCTTTGGCGTTCTTTAGGACA ATGATTGGAGAAGGACCAAAGCCGAACAGTCACACCCTGGCAGCGGTATTAAGTGCCTTGGCTTCTCTAGAGCATGGTAA GCAGCTTCATGCAACTGCAATAAGATTGGGAGAAGTATCATCTGTTTCCGTGGGTAATGCTTTAATTACCATGTACTCAA GATCTGGAAGCATCAATGATGCAAGAAAAGTATTTGCACAGATATGCTCCAACAGGGATACAGTGACTTGGGCTTCTATG ATTATTGCTCTTGCTCAACATGGTCTTGGAAACGAGGCAATAGAACTGTTTGAAATGATGCTAAAATCTAACTTAAAGCC TGATCACATAACTTATGTAGGTGTGCTGTCTGCCTGCACACATGTGGGACTGGTAGAGCAGGGTAAATATTACTTTAATT TGATGAAAATTGTTCATCACATTCAACCCACCCCTAGCCACTATGCATGCATGGTTGACCTATTTGGACGTGCTGGATTG CTTGAAGAAGCATATAATTTTATAAGAAGTATGCCTATTGAACCAGATGTTATAGCTTGGGGTTCACTTTTGTCTTCTTG TAGGAGTCATAAAAATGTGGATTTGGCTAAAGTGGCAGCTGAAAATTTGCTTCTTATTGATCCTAACAATAGTGGGGCTT ACTCGGCGCTTGCTAATACACTTTCAGCCTGTGGTAAGTGGGAGGATGCTGCAAAGATTAGGAAGTCAATGAAAGACAGA GCAGTGAAGAAAGAACAAGGAGTCAGTTGGGTTCAAATCCAGAACAAAGTCCATATTTTTGGGGCTGGAGATGCACTTCA CCCGCAAAGAGATGCAATCTACAGTATGATTTCGAAAGTATGGAAGGAGATAAAGAAAATGGGCTACACTCCGGACACTG ATTCTGTATTGCATGACCTAGAGCAAGAAGTGAAGGAACAAATCCTTAAACATCATAGTGAAAAACTCGCCATTGCATTT GCATTAATAAATACTCCAAAATATACTACGCTGAGGATCATGAAGAACCTTAGAGTTTGTAATGACTGCCATTCCGCCAT AAAATATATCTCTATGCTTATGGGAAGAGAAATTATAGTAAGAGATGCCACGCGTTTTCATCATTTCAAGGATGGTTTCT GTTCCTGTCAGGATTACTGGTAG
Protein sequence (LotjaGi5g1v0314000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEFPKPPSHSELYVNLLQSAIKSRDPFVGRPIHAQIIKHGLCIGSVFLMNNLLNFYAQTGSFSDAHRVFDEMPLKTTHSW NTILSAYAKGGHMDTARRVFDEIPQPDSVSWTTMIVGYNRVGLFNVAIRMFLNMISSGVSPTQFTFTNVLASCAATEALG IGRKLHSFIVKLGQAGVVPVANSLLNMYAKSGDSVMANVVFDRMRIKDKSTWNSMISMHMQFGRLDLAAALFDQMTDRDT VSWNSIITGYSRQGCDIEALETFSSMLRSSSLKPDNFTLGSVLSACAHLENLKLGKQIHAYIIRANIDISEAVQNALISM YAKSGAVEIALRIVKLTGTSSINFIALTSLLDGYVKIGDVILAREIFDSLKRRDVVVWTAMIVGYTQNGLISDALAFFRT MIGEGPKPNSHTLAAVLSALASLEHGKQLHATAIRLGEVSSVSVGNALITMYSRSGSINDARKVFAQICSNRDTVTWASM IIALAQHGLGNEAIELFEMMLKSNLKPDHITYVGVLSACTHVGLVEQGKYYFNLMKIVHHIQPTPSHYACMVDLFGRAGL LEEAYNFIRSMPIEPDVIAWGSLLSSCRSHKNVDLAKVAAENLLLIDPNNSGAYSALANTLSACGKWEDAAKIRKSMKDR AVKKEQGVSWVQIQNKVHIFGAGDALHPQRDAIYSMISKVWKEIKKMGYTPDTDSVLHDLEQEVKEQILKHHSEKLAIAF ALINTPKYTTLRIMKNLRVCNDCHSAIKYISMLMGREIIVRDATRFHHFKDGFCSCQDYW
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 23 | 109 | 87 | 1.5E-128 | – | |
Gene3D | 33 | 161 | 129 | 1.9E-27 | ||
ProSiteProfiles | 45 | 75 | 31 | 8.133 | ||
Pfam | 49 | 73 | 25 | 0.045 | ||
ProSiteProfiles | 76 | 106 | 31 | 9.251 | ||
TIGRFAM | 78 | 103 | 26 | 3.8E-5 | ||
Pfam | 79 | 103 | 25 | 2.0E-4 | ||
PANTHER | 85 | 165 | 81 | 1.5E-128 | – | |
Pfam | 106 | 154 | 49 | 3.7E-9 | ||
ProSiteProfiles | 107 | 141 | 35 | 11.345 | ||
TIGRFAM | 109 | 142 | 34 | 5.1E-6 | ||
PANTHER | 161 | 237 | 77 | 1.5E-128 | – | |
Gene3D | 162 | 299 | 138 | 1.1E-25 | ||
ProSiteProfiles | 177 | 207 | 31 | 6.39 | ||
Pfam | 182 | 205 | 24 | 0.014 | ||
ProSiteProfiles | 208 | 242 | 35 | 10.194 | ||
Pfam | 210 | 238 | 29 | 5.1E-5 | ||
TIGRFAM | 211 | 239 | 29 | 2.3E-4 | ||
Pfam | 239 | 287 | 49 | 7.3E-8 | ||
PANTHER | 240 | 295 | 56 | 1.5E-128 | – | |
TIGRFAM | 241 | 275 | 35 | 6.8E-5 | ||
ProSiteProfiles | 243 | 274 | 32 | 6.489 | ||
ProSiteProfiles | 275 | 309 | 35 | 6.204 | ||
PANTHER | 293 | 421 | 129 | 1.5E-128 | – | |
Gene3D | 303 | 423 | 121 | 5.9E-21 | ||
ProSiteProfiles | 310 | 340 | 31 | 5.821 | ||
ProSiteProfiles | 343 | 373 | 31 | 7.903 | ||
TIGRFAM | 347 | 376 | 30 | 0.0024 | ||
ProSiteProfiles | 374 | 408 | 35 | 11.213 | ||
Pfam | 374 | 421 | 48 | 1.9E-8 | ||
TIGRFAM | 376 | 409 | 34 | 4.9E-5 | ||
PANTHER | 412 | 638 | 227 | 1.5E-128 | – | |
Gene3D | 424 | 534 | 111 | 5.9E-24 | ||
ProSiteProfiles | 441 | 471 | 31 | 7.213 | ||
Pfam | 446 | 469 | 24 | 0.34 | ||
SUPERFAMILY | 452 | 633 | 182 | 9.49E-8 | ||
ProSiteProfiles | 473 | 507 | 35 | 11.959 | ||
Pfam | 473 | 519 | 47 | 2.4E-10 | ||
TIGRFAM | 475 | 508 | 34 | 1.3E-6 | ||
ProSiteProfiles | 508 | 542 | 35 | 6.018 | ||
Gene3D | 535 | 696 | 162 | 5.2E-16 | ||
ProSiteProfiles | 544 | 574 | 31 | 7.278 | ||
Pfam | 547 | 571 | 25 | 0.17 | ||
ProSiteProfiles | 610 | 644 | 35 | 9.01 | ||
Pfam | 613 | 640 | 28 | 0.9 | ||
Pfam | 647 | 770 | 124 | 9.9E-41 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of LotjaGi5g1v0314000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…