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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0324100 |
| Transcript ID | LotjaGi5g1v0324100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein family; TAIR: AT1G12300.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q0WKV3|PPR36_ARATH Pentatricopeptide repeat-containing protein At1g12300, mitochondrial; TrEMBL-Plants: tr|A0A072TIZ9|A0A072TIZ9_MEDTR Pentatricopeptide (PPR) repeat protein; Found in the gene: LotjaGi5g1v0324100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:64235920..64241109) extracted from Lotus japonicus Gifu genome v1.2.
ACTTTTTAAAACAGTGGTTATTTTATTAATATTTGTGAATGGTCAATTTCAGATTCATAATGCTCCATATTTTGTGAAGA GAGCACAACCACAACATAATATAGATATATTCACTGTTTTGTCGCAAACAGCAACCAATTCTGTCGGGAAACAACCACTC ACCATGTCGTCATTTTTAAGGTTAAAGAACTCTCTGCCTCCTTCCATTCGCAATGCTGATGATGCTGTCTCCATCTTCAA TCGCTTGCTCCGAATGAGTCCTACCCCACCCATCATCGAGTTCAACAAGATTTTAACATCCCTCGTGAAGATGAAGCATT ACCCCACTGCAATTTCCCTTTCTCACCAATTGGACTTCACTGGAATTTCTCCTGACATTTTCACTCTCACCATCTTGATC AATTGTTATTGCAATCAAGCTCAAATTACTTCCGCTTTTTCTGTACTCGCCAAAATTCTCAAGAGGGGTTATCGCCCAGA TACCATCACCTTCACGACACTTATGAAAGGCCTCTGTCTTAATGGTCAGGTTCAGACAGCACTGCAATTTCATGATCATG TGGTGGCACAGGGATTTCGGCTGGATCAAGTTACTTACCGTATCTTGATCAACGGGTTATGTAAGATGGGGCAAACAAGA GCTGCATTGCAATTAATGAGACAGATTCAGGGGCAATTGGTTAAGCCTGATGTGGAAATGTACACAATCATCATTCATAG CTTCTGCAAAGACAAACTTGTAAGTGATGCTTACAATTTATATTCTGAAATGCTTGCCAGGAGAGTTTTACCTGATGTTT TCACTTACAATGCTTTAATATATGGCTTTTGCATTGTCAGTCAATTGAAAGAAGCAACTAAGTTGTTGGATGAAATGGTG ACAAAAAACATCCACCCGGATGCTTATACTTTTAATATACTGGTCGATGCTTTAGGTAAAGAAGGAAATGTGAAAGAAGC TAAAACTGTGTTAGCTGTGATGATGAAACAAGGTGTGAAACCTGATATTATTACTTATAATTCTTTAATGGATGGGTATT GCCTAGTTAGTGAAGTAAACAAGGCCAAAGACATATTCAACTCCATGCCTCAAAGGGGAATTGCTCCTAATGTTCACAGC TACAGTATTATGATTAATGGACTATGCAAGACTAAAAAGGTGGATGAAGCTTTGAATCTCCTTGCAGAAATGGACTGCAA AAACATTATTCCTGATACAGTAACATACAGTTCTCTTATCGATGGTTTATGCAAATCAGGAAGAGTATCTCATGCTTGGG AGCTTGTTGATGAGATGCACGTTAAAGGTCAACCAGCCAATATAATCACCTACAATTCTTTATTGGATGTCTTATGCAAA AGCCATCAAGTTGACAAGGCAATTGCTTTAATCCAGAAAATTAAAGGCCATGGTATTCAGCCAGATGTGCACACATACAG TGTCATTATGGATGGACTGTGCAAAGAAGGAAGACTTAAGAATGCACAAGAGATTTTTCAAGATCTTTTAACTAAAGGCT ATTCTGTAACTGTCCAAACATATACTATTATGATCAATGGGTTTTGTAAAGAGGGTTTGTTTGACGAAGCATTGACCTTG CTGTCAAAAATGGAAGACAACGGTTGCATTCCTAATGCTATAACTTTTGAAACAATCATTCGTTCACTTTTTGAAAAGGG TGAGAATTATAAGGCAGAGAAACTTCTACGTGAAATGATGGTGAGAGGTCTATTGAAAAAGTAAAACTAGGTAAGATGCT TTCTAGTTACACATTATGTTATTCATAATTTTTATGATGACCATCTTATATTTATTTATTTTGTAGGTGCGCACAAAAAG GAAGATGGACTACACAACGGACTCACTATCACTTTAGCCATGACAAAAGCCATAAGTTACTTGGTTCATTTTAACATTGT CATGATATCAATGGTCCATTTTTTTATATAACTGTCCTTCTTCCTCTTCCTCATTTTCTACTGTTTTTTAGCTTCAGCTA CTACCGTGGTTCTTCCAGCAGCTTTGCACTGAACTTTTCCTACTCTTTCAGCAGATCAAGTGTATAATCCCTTCTTGGGA AATGAAAATGCCTTTCTTGCTCGTTGTTATTTCCATCCCAAGAAATTACTTGTAGTGTCCAAAGTCTTTTGCCTGTATTT CTTCTTGAAAGCTGACATTAAGTTTCTGAATTCCATGGGGATTATTACCAATAGTAATTATTTCATCAACATAAACAATG AGAACTACTTTCTTCCCATTTTCATTTTGTTTAATAAATAGGGTGCCATCTGTTAGAGACAGCTTAAAGATTTCCTATTC AGGGAAATGATTATCAAAGAAGATTTATATTGAGATGTTTAGTTTTAAATAAGTTTAAAGATGTAAAGATTACAGAAAGA AAATTTGAATGCAATATATAGATAAAATTATCAATGATGTGAACAAGGACATATACAGTTTTTGCCACTGTATATGTACT TTCACTTCAACTGTGTTGTTTTCAGAGTTTCCCAACCAACCAGCCATTGTTTTATGTAAATTCAAAGGGCGAGTAGAGCT CAATCTGTCTATTTTGAGACAGTCATTGTTTGATATATTACCAAGTATGTGTGTGGTCAGATTTTGGGTACTTGCCTCTT CAAATCAGGTTTTATATATGATCACCTGTTGGTTGATTCTTTCTGTCGCTTTAACATATTGTCATGTATCCTGACTGAGC AGTATGAATGCACCTGTCATGGTGGAGTTGGAAGGGGTGACTGGTTCACTTGAGGTACCAGAACATTTCCTTCTGCTTAC TCATGATTTTTTCTTTCATGTAATGTTACTGAATTTAAGCGCACATTTGTTGGTCGTTTATACATGTCTCTCCCGATCAT TTTATGTCAGTATCATATTTCTAAATATATATCCGTATGGCTAGATGCCCTTCATGTGAAATGGATTAAAAGGTTTCTTT TAAGACGCCTCCTAACTTTGACCACATTAGTCATTTAGTACCCTCATGTTGAATGAAGTGCCTTGACTTGCTTACTACGG ATCATGTGAGAATTGTATGTAACTATTTACACTGTATTTCCCTTAGCTCTCATTTGTATGTTTAACTTTAGCAACGTTTA AATGCCCATAGTTCATGTTTCCTTGACCCTGATGCCTGTAAAGAAAAGGTCATGGCCATTAAAGCTTTAGTTGGAAAGCT AGGAAATCTCAAGATTCCACGTGAAATTGCCAAGGTTTCACGTGGAAAACTCAAGTTTCCACGTGAAACAGCCCAAGTTC CACGTGAAAAGCTTGGAAATCTCAGGATTCCACGTGAAGTTCACTACCTCACTTTGACCATGCTGCTCTTTTTAATATTC CAATGATGTTTCAAACTTTTTTTTAAGATATGACAAGATGTTCATAAAAAACAACTGATTAGTTCTATGAAATTTTGCAC CTCAAAACTACATTTATGCTTCTGTGACACTGTTGAATCTATAAAACTTTGATTAAGGATTTAAAATACCTCGTACTACA TATTAATTCCAAGTTGGGTTTTAATGGTTTAATATAGTTCTCAATTTCTTTAATTTGGTGAAGAACTCCGCAGTTTATGC TCAGAATGAAAATTTGATCATTTATTAATTCTATGAATTCTGGAAGTCCATAAGAACCACTTTCAATATTCCTTTTTCAT GCTAAGGCTGGGCTTTGGACTTTGTAGCACATTCACTTGCCTTAAATACATCATGCTTAATTTTCTTTTTTTAATATTTA ACCTCTTTCATGTTCTATTTTCTAACCTGTTATTTTCAATATCTTTATATTTAAGATCAGCTTCAGGATACATGTTTTAT ATTTTAGTTCTATGTTATATTCATTTTTAATGTATTAGTTGTGTGATAACAATAGCTTTGCATTCATTTGAAATTACAAT GCACGTACCTATCCAAAACATTGACAAAACAATTCATGAGTATCTGAGTACACCTAGCCAAAATTTGTCAGCACTTATCG TTTTTTAAGACTCTGTTTGTGTATGTATCATTTAGTGTGTCTGTTTTAGTGTAGGAGTGTGGTTCAACATACCTTCTCCC CCAGCAACAAATTTTTGCTTCTTTGTCTTTGTGCTTTGCAACTTTTCCTAAAATGCAAACAAACATAGCCTGAACCATTT GATATTTATCTAGACTCAATATCTGATATCTTGTTCTCCCAATGTCCTGATTGCTTTGGAGGAGCTTCAAGGGCGGAAGA TACCCTTTAGCATCTGTTGCTAACCATCTTGTTCATTTCTTTTGTCATTTGCATGTGTTTATGGCAACATGGTGATACAA TTCTAGCACTATTTTAGCTCTGCTAAGTCAATAGAAAGGTAAAAAATCTGGAATGTAAATTGGCTTACACGGTTTGGTGC AGCAAAACTAAGATTTTACCAACACAACAGATGGCGGAATTACTTTGTAAAAATGGGGGTAGTCGCTCTCCAAAAGTTTT TGTTAAAAAAATAAATAGAATTGTATTCAAATGTTCTGTTTTCTCTCTTTTAAATTTTAATATTGCTTAGCCATTTAATT TTTTTTCTTTCTATTATCTCTTTTTTCTGGCTCCGTTCCTAAACACAACTAACCTTACCTTGAGTTCAGAAACAGAATGA CTGCCTTTGTTTACAGCAATTAATAATTGTATATTTTGTGGCCAGGTTTTGCAGTTTAGAAAATCTTACAGTCTTACAGG ACTTAGCTTCTTTTGATAACTTAGTTTTACAAATATTATGTTTTTATTTATTTATTGGTAAATGTTTGATGTCGTTTATC TTTTATGCTGGCAGCTGAAATGGATAAATGCAGATATGCAAAAGATACAATCAACATCTGGGGAGAAAAAGTACAAACCC AGAAATCCATCCAACCCCAAACTAGCAAACCCAACCCAAACTGCAAGACAAGTTTCATTGCTTATATATATGAGAATACT GTTTTTATGAAATGTGCTGAATTGTATCTTATTACTGGAATCCTAATTTTTTAGCCTAGTTAAATTGGCTTACCAAATTC TTGCTTTTGGAGCCTGATTTGCTAGTGAAATTCAATATGACTAGATATATAGAGCTAGGATAGTAGAACTGCAGTTTCTC ACTTGTGCTTAATGTGCTTTGGGGAGAGGTCCGTGATTAGTCTCTTTGTCTGGAAGGGTCTTTATTCCAG
CDS sequence (LotjaGi5g1v0324100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCGTCATTTTTAAGGTTAAAGAACTCTCTGCCTCCTTCCATTCGCAATGCTGATGATGCTGTCTCCATCTTCAATCG CTTGCTCCGAATGAGTCCTACCCCACCCATCATCGAGTTCAACAAGATTTTAACATCCCTCGTGAAGATGAAGCATTACC CCACTGCAATTTCCCTTTCTCACCAATTGGACTTCACTGGAATTTCTCCTGACATTTTCACTCTCACCATCTTGATCAAT TGTTATTGCAATCAAGCTCAAATTACTTCCGCTTTTTCTGTACTCGCCAAAATTCTCAAGAGGGGTTATCGCCCAGATAC CATCACCTTCACGACACTTATGAAAGGCCTCTGTCTTAATGGTCAGGTTCAGACAGCACTGCAATTTCATGATCATGTGG TGGCACAGGGATTTCGGCTGGATCAAGTTACTTACCGTATCTTGATCAACGGGTTATGTAAGATGGGGCAAACAAGAGCT GCATTGCAATTAATGAGACAGATTCAGGGGCAATTGGTTAAGCCTGATGTGGAAATGTACACAATCATCATTCATAGCTT CTGCAAAGACAAACTTGTAAGTGATGCTTACAATTTATATTCTGAAATGCTTGCCAGGAGAGTTTTACCTGATGTTTTCA CTTACAATGCTTTAATATATGGCTTTTGCATTGTCAGTCAATTGAAAGAAGCAACTAAGTTGTTGGATGAAATGGTGACA AAAAACATCCACCCGGATGCTTATACTTTTAATATACTGGTCGATGCTTTAGGTAAAGAAGGAAATGTGAAAGAAGCTAA AACTGTGTTAGCTGTGATGATGAAACAAGGTGTGAAACCTGATATTATTACTTATAATTCTTTAATGGATGGGTATTGCC TAGTTAGTGAAGTAAACAAGGCCAAAGACATATTCAACTCCATGCCTCAAAGGGGAATTGCTCCTAATGTTCACAGCTAC AGTATTATGATTAATGGACTATGCAAGACTAAAAAGGTGGATGAAGCTTTGAATCTCCTTGCAGAAATGGACTGCAAAAA CATTATTCCTGATACAGTAACATACAGTTCTCTTATCGATGGTTTATGCAAATCAGGAAGAGTATCTCATGCTTGGGAGC TTGTTGATGAGATGCACGTTAAAGGTCAACCAGCCAATATAATCACCTACAATTCTTTATTGGATGTCTTATGCAAAAGC CATCAAGTTGACAAGGCAATTGCTTTAATCCAGAAAATTAAAGGCCATGGTATTCAGCCAGATGTGCACACATACAGTGT CATTATGGATGGACTGTGCAAAGAAGGAAGACTTAAGAATGCACAAGAGATTTTTCAAGATCTTTTAACTAAAGGCTATT CTGTAACTGTCCAAACATATACTATTATGATCAATGGGTTTTGTAAAGAGGGTTTGTTTGACGAAGCATTGACCTTGCTG TCAAAAATGGAAGACAACGGTTGCATTCCTAATGCTATAACTTTTGAAACAATCATTCGTTCACTTTTTGAAAAGGGTGA GAATTATAAGGCAGAGAAACTTCTACGTGAAATGATGGTGAGAGGTCTATTGAAAAAGTAA
Protein sequence (LotjaGi5g1v0324100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSSFLRLKNSLPPSIRNADDAVSIFNRLLRMSPTPPIIEFNKILTSLVKMKHYPTAISLSHQLDFTGISPDIFTLTILIN CYCNQAQITSAFSVLAKILKRGYRPDTITFTTLMKGLCLNGQVQTALQFHDHVVAQGFRLDQVTYRILINGLCKMGQTRA ALQLMRQIQGQLVKPDVEMYTIIIHSFCKDKLVSDAYNLYSEMLARRVLPDVFTYNALIYGFCIVSQLKEATKLLDEMVT KNIHPDAYTFNILVDALGKEGNVKEAKTVLAVMMKQGVKPDIITYNSLMDGYCLVSEVNKAKDIFNSMPQRGIAPNVHSY SIMINGLCKTKKVDEALNLLAEMDCKNIIPDTVTYSSLIDGLCKSGRVSHAWELVDEMHVKGQPANIITYNSLLDVLCKS HQVDKAIALIQKIKGHGIQPDVHTYSVIMDGLCKEGRLKNAQEIFQDLLTKGYSVTVQTYTIMINGFCKEGLFDEALTLL SKMEDNGCIPNAITFETIIRSLFEKGENYKAEKLLREMMVRGLLKK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 15 | 169 | 155 | 3.4E-33 | ||
| PANTHER | 16 | 242 | 227 | 1.4E-167 | – | |
| ProSiteProfiles | 36 | 70 | 35 | 6.38 | ||
| ProSiteProfiles | 71 | 105 | 35 | 10.468 | ||
| Pfam | 73 | 102 | 30 | 0.11 | ||
| TIGRFAM | 74 | 107 | 34 | 2.2E-5 | ||
| SUPERFAMILY | 81 | 307 | 227 | 5.23E-5 | – | |
| Pfam | 105 | 154 | 50 | 1.2E-11 | ||
| ProSiteProfiles | 106 | 140 | 35 | 10.271 | ||
| TIGRFAM | 108 | 141 | 34 | 5.8E-5 | ||
| PANTHER | 130 | 275 | 146 | 1.4E-167 | – | |
| ProSiteProfiles | 141 | 175 | 35 | 10.83 | ||
| TIGRFAM | 143 | 176 | 34 | 1.1E-5 | ||
| Gene3D | 170 | 240 | 71 | 3.1E-20 | ||
| Pfam | 173 | 203 | 31 | 3.4E-8 | ||
| ProSiteProfiles | 176 | 210 | 35 | 11.005 | ||
| TIGRFAM | 179 | 212 | 34 | 3.8E-7 | ||
| Pfam | 210 | 258 | 49 | 4.2E-16 | ||
| ProSiteProfiles | 211 | 245 | 35 | 12.079 | ||
| TIGRFAM | 213 | 247 | 35 | 2.3E-7 | ||
| Gene3D | 241 | 309 | 69 | 1.3E-21 | ||
| PANTHER | 242 | 445 | 204 | 1.4E-167 | – | |
| ProSiteProfiles | 246 | 280 | 35 | 12.386 | ||
| TIGRFAM | 248 | 282 | 35 | 4.5E-9 | ||
| Pfam | 280 | 329 | 50 | 1.4E-18 | ||
| ProSiteProfiles | 281 | 315 | 35 | 12.595 | ||
| TIGRFAM | 283 | 317 | 35 | 1.8E-9 | ||
| Gene3D | 310 | 380 | 71 | 4.7E-25 | ||
| ProSiteProfiles | 316 | 350 | 35 | 12.211 | ||
| TIGRFAM | 318 | 352 | 35 | 8.2E-9 | ||
| Pfam | 350 | 399 | 50 | 5.9E-16 | ||
| ProSiteProfiles | 351 | 385 | 35 | 12.595 | ||
| TIGRFAM | 353 | 382 | 30 | 3.8E-9 | ||
| Gene3D | 381 | 449 | 69 | 3.0E-21 | ||
| ProSiteProfiles | 386 | 420 | 35 | 12.025 | ||
| TIGRFAM | 388 | 422 | 35 | 1.7E-7 | ||
| PANTHER | 415 | 523 | 109 | 1.4E-167 | – | |
| Pfam | 417 | 446 | 30 | 9.4E-10 | ||
| ProSiteProfiles | 421 | 455 | 35 | 11.762 | ||
| TIGRFAM | 423 | 456 | 34 | 1.1E-4 | ||
| Gene3D | 450 | 521 | 72 | 1.1E-19 | ||
| ProSiteProfiles | 456 | 490 | 35 | 13.548 | ||
| Pfam | 458 | 502 | 45 | 2.0E-13 | ||
| TIGRFAM | 459 | 492 | 34 | 1.0E-11 | ||
| ProSiteProfiles | 491 | 525 | 35 | 9.087 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi5g1v0324100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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