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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0330900 |
| Transcript ID | LotjaGi5g1v0330900.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box protein family; TAIR: AT3G06240.1 F-box family protein; Swiss-Prot: sp|Q8GXC7|FBK50_ARATH F-box/kelch-repeat protein At3g06240; TrEMBL-Plants: tr|I3SJH1|I3SJH1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0330900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:64804048..64806775) extracted from Lotus japonicus Gifu genome v1.2.
CATAGACATAGTGAAGCCATGAAACTGAAACATACAAAGAAAATAGAAGCAAATGAAATGCCTTCATTCCTCGCTGAAAC CCTAATCCCAATTTTGCTGCCTGAAGGCTCTCGACGCCGCCCAGTTTGTCGCAACTAGCGCCGCGCCGCCGTCCTTTCAC TCGCTCGGTGCCGGCAGCCGCGTGCAACGCCTCTGTGTCGTCAGTTGGAGTGTCTCCCGTCGAGGTAAAGCGAACTCACT CCCTCCAATCTCCATGAATAGTAGCAATACACGTTTAATACACACATACTATTGAATACTGATTAACACACACACACACT CAATCAGAAACTGAAACAAACTTAACATTCAAATCATTATTGATTTTTTAATATTATTTGCTGCTTGCTGTAAACTACTG TGGTGACCATGATTAGAATGAATTTCTGATTGAATTCATAGTGATGAATCAATGATAATCACAATTTATTATTTATCTTA ATCATAACCAAACCCTAATATTCATTGTTGCTTTCTCTATCTCACTTTCTGTTTCTATATTTCCTTATTTTCTCAAGCAT GGACAATGAATCCAAGCATCTGCCTCAAGATTTGATAACTAGAATCCTGCTTAGGTTGCCGGTGAAGTCTCTTTTACGCT TCAAGTGTGTGTGCAAGTTTTGGCGGTCCCTCATATCCGAACCCGATTTTGCAAGATCTCATTTTGAACTTGCTACTCCT CGACTCGTGTTCAATGCCGGTCTTGGTGTTCGAACCATGGACTTTGAGGGATCGCTTCACTCTAATCCTATTTCCGAACC AATAAAGGTTGACTTTTTGCCTACCCCATCTCATACTCCAATTTTAGGTCCAAATGACTTTTTGTCTGCCCGCCCTCGTT TTCAAATTGTAGGTTCATGTAGAGGTTTTCTGCTGTTGAATTCTAATGAAAGCCTCTACTTGTGGAACCCATCCACACGT GTCCATAAACCAATACCTTCATCGCCTTTTTACACCAACGTTCATGGTTATCTGTATGGTTTTGGGTATGATTCATCAAA AGATGACTACTTAGTGGTTCAAGTGCCCATTGCACCAAGTTCCTCCTCACCTAGATGTTTAGAACGTGTGCAGTTTTTCT CTATGAGAACTAATATGTGGAAATATATTGAGGGTATCAATTCACGTCCGTGGGACCACTCTAGGAGTGCTCGACCTGGG TTGCTCTTCAATGGGGCCGTTCACTGGTTGGCTTATGATCATGATAAATCAAGGGAGGTTATTATTGCCTTTGATTTAAT GGAGAAGAAACTTTTACAGATACCCCAGCCAAAGGATCTCTGGTATGATCTTTCATATTGTGATTTGTGGGTGCATGGAA GTTTTTTGAGTCTAATGATGAATGGGAGCGATACACTTGAAATATGGGTTATGGAAAAATACAAAATACAATCATCTTGG ACTGAGACTAGTCTATTTCGTAATGGCATTTACTACCTTTCCCCATTATGCTCTACAAAAAGTGGTGATCTTGTTATGAA TAGTGCACCAGAACTTGTGAAGTATTTTTATAAGGCAGATCAGCTAGAGAAGCGCGATTATCAAGGTTCTGGTTCGTTAC AATACACAGTGCCGATGTATACAGAGTCTATCTTTTCACTACCCGGTGTAGGTGAGCAAAGCTAAAAAAGTTGGCTGACA ATAACAAATGAGAATGATTTTAGTTAAGTTGGATGTAAAAGTTCATTCATCCTATGTAACTCTTTTGTGTCTTCAAGAAA ATGTGATTTGTTTTACATTCTAATGTGTGCTAATGTGGGTTGGAAGTTTTTCCAAACATACTCGTAGACTAACAAAATTG CCTGGAAAGAGAATAATAAGAGTTCGTATGAAATTGTAGGAGTCTTCTTGGCATCTTTTCCTTACTTCATCGTTATTTTT AACTTTTCTATGCACTCTATCTCTAAATTTTTTTCCTTGTTATCACGAGTAATTCTCCAAATATTTTGTAGATTCTTAAT CTAACCCCCAATTATCATGAAGGTTTATTGTTTCCAACAAAATCAAATTAAACTGATATTTGAAATAAATAAATAATTTA TCAAATTTATCAAACACCCCTCTTGTGCAATAAATACTAGACCAGTAGACCATACAGCATAAAAATAAATCCATGAAGAA AATGGGGATTTAAACACCTTTTTTTTACAGGGGGATTTAAACACCTTACACATGTGAGGATGAGGTTTAAAATCCCAAAA CTCAAGTCCACCGTCAAGTTTAGAACAATAAAAATTATCCCACTTGAACCAATGAATACCTTGTCACGAAGTATAACAAC TCCAAAAAAATAATATCACTCACTATTTCATGATTTCATCACATATATCATCTGGTAAGATATGAAACTTATAAAACATG ACATTATGCAGGTCAAAAAATAGCTTGTGTGTCACTGGTTTAATCGAAACCTCCCATCCTGCACGAAAAAGAGGCTGCTC CTTCTAACTTTTGTGTTTCTTACAAACCCGCTTCTTGAAAAAAAAAAACTACTTGCATCTTTGACTTTCCAATGGTCGTA AGACCCAAATTTAATGTGACAAAAATTAGTGGAAATAGTATTTTTGTTTTGGAGGGAAATAAAATGATATAGGGGTGACA TGTGGCATAAGCTTCGAGAAAAAAACTTTGGTCTATTATTTCGTGAAAATATATACATGAGCATTATACTTTTAGCTATA GATCCCAA
CDS sequence (LotjaGi5g1v0330900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGACAATGAATCCAAGCATCTGCCTCAAGATTTGATAACTAGAATCCTGCTTAGGTTGCCGGTGAAGTCTCTTTTACG CTTCAAGTGTGTGTGCAAGTTTTGGCGGTCCCTCATATCCGAACCCGATTTTGCAAGATCTCATTTTGAACTTGCTACTC CTCGACTCGTGTTCAATGCCGGTCTTGGTGTTCGAACCATGGACTTTGAGGGATCGCTTCACTCTAATCCTATTTCCGAA CCAATAAAGGTTGACTTTTTGCCTACCCCATCTCATACTCCAATTTTAGGTCCAAATGACTTTTTGTCTGCCCGCCCTCG TTTTCAAATTGTAGGTTCATGTAGAGGTTTTCTGCTGTTGAATTCTAATGAAAGCCTCTACTTGTGGAACCCATCCACAC GTGTCCATAAACCAATACCTTCATCGCCTTTTTACACCAACGTTCATGGTTATCTGTATGGTTTTGGGTATGATTCATCA AAAGATGACTACTTAGTGGTTCAAGTGCCCATTGCACCAAGTTCCTCCTCACCTAGATGTTTAGAACGTGTGCAGTTTTT CTCTATGAGAACTAATATGTGGAAATATATTGAGGGTATCAATTCACGTCCGTGGGACCACTCTAGGAGTGCTCGACCTG GGTTGCTCTTCAATGGGGCCGTTCACTGGTTGGCTTATGATCATGATAAATCAAGGGAGGTTATTATTGCCTTTGATTTA ATGGAGAAGAAACTTTTACAGATACCCCAGCCAAAGGATCTCTGGTATGATCTTTCATATTGTGATTTGTGGGTGCATGG AAGTTTTTTGAGTCTAATGATGAATGGGAGCGATACACTTGAAATATGGGTTATGGAAAAATACAAAATACAATCATCTT GGACTGAGACTAGTCTATTTCGTAATGGCATTTACTACCTTTCCCCATTATGCTCTACAAAAAGTGGTGATCTTGTTATG AATAGTGCACCAGAACTTGTGAAGTATTTTTATAAGGCAGATCAGCTAGAGAAGCGCGATTATCAAGGTTCTGGTTCGTT ACAATACACAGTGCCGATGTATACAGAGTCTATCTTTTCACTACCCGGTGTAGGTGAGCAAAGCTAA
Protein sequence (LotjaGi5g1v0330900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDNESKHLPQDLITRILLRLPVKSLLRFKCVCKFWRSLISEPDFARSHFELATPRLVFNAGLGVRTMDFEGSLHSNPISE PIKVDFLPTPSHTPILGPNDFLSARPRFQIVGSCRGFLLLNSNESLYLWNPSTRVHKPIPSSPFYTNVHGYLYGFGYDSS KDDYLVVQVPIAPSSSSPRCLERVQFFSMRTNMWKYIEGINSRPWDHSRSARPGLLFNGAVHWLAYDHDKSREVIIAFDL MEKKLLQIPQPKDLWYDLSYCDLWVHGSFLSLMMNGSDTLEIWVMEKYKIQSSWTETSLFRNGIYYLSPLCSTKSGDLVM NSAPELVKYFYKADQLEKRDYQGSGSLQYTVPMYTESIFSLPGVGEQS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| ProSiteProfiles | 2 | 48 | 47 | 10.266 | ||
| PANTHER | 3 | 358 | 356 | 1.0E-94 | – | |
| PANTHER | 3 | 358 | 356 | 1.0E-94 | – | |
| Gene3D | 3 | 93 | 91 | 8.4E-10 | – | |
| SUPERFAMILY | 7 | 68 | 62 | 1.57E-14 | ||
| SMART | 8 | 48 | 41 | 4.3E-8 | ||
| Pfam | 8 | 44 | 37 | 1.2E-8 | ||
| TIGRFAM | 112 | 301 | 190 | 8.2E-27 | ||
| SUPERFAMILY | 113 | 296 | 184 | 1.28E-5 | ||
| Pfam | 215 | 297 | 83 | 5.1E-6 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi5g1v0330900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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