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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0331000 |
| Transcript ID | LotjaGi5g1v0331000.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box protein family; TAIR: AT3G06240.1 F-box family protein; Swiss-Prot: sp|Q8GXC7|FBK50_ARATH F-box/kelch-repeat protein At3g06240; TrEMBL-Plants: tr|I3SJH1|I3SJH1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0331000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:64806828..64814473) extracted from Lotus japonicus Gifu genome v1.2.
AACTAGATTATTATTTGTTGTCTGATTTGATTATTTTTATGAATTACTCCCTCCGTTCCTTATTAACTGTCTACTTTGAA GAAAAAAATTTGTTCCTATATATCTGTCCACTTAGAGTTTCAAGAGAGCATTAAATGATGTTTTTCCAAGAAATGCCCTT GTAGGAACAATAAATGAGGAAAGATAATATACATTTTAAAGGGTGCAATAGGAAATCAAATAATACTTTTATGAAAAGTA ACAAAATTAATTGCACTCCTTAATATGTATGTTTCTTCTCTTACTGGACAGTTAAATAGGAACGGAGGGAGCATGTTTTT TAAATTTATATGGTTTTTTATTTGCTGCCTGATTTAATTATTTTTAAGAATTATGTGTTATTGGTTTTATTGTTTTGGAG CGAATTTGGATGATATGGGGGTGCCACGTGTCAGAACATCCTAGAAAAAAAACATTCTTTTAATATATTAGATATAGATA TAGATATAGATAAATAGATTGATACTTAAGCCTAAACTAATCAAATCACTCTAATCTTGACTCTCTATTCTTTTAAATTT TAATAGATACTTTGCCATCTAAAAAAAAAAGATAGATAGAGATGAGAATAAAAAATTGAAAATGTGGGCTTAAGCCTTAA GTCCTATTTTATTATAAGAAAAATAAAAAAAATGAAATGTTGAAGTTTTAATTTGAAAAAATTAGGCAACCACGTCGTTC TGTTGCTCTGCGTTTTAGAAATATTGATTAGGTTTTCCTTTTCCTCCGTTTTGGGTTTGGATTTCGCTCCGCCGTCCTTT CACTCGCTCAGTCCGCGCCTTTCCTCCACAGTTCTCGCCGCCGGCAACCGTGCGTGACGACTCTGTTCGAGTGACTCCCG TTGAGGTAAGCCAGAAATTGAAGCAAACTTGTCATTCCATATTTTGACTCTCAAATCACTATTGATTTTTCAATATAATT TGCTACTTTTGCTCACCATGAATAACAATATGCATGTCTTGTATTGAATTTGGAAGTTTGGAACAGAGTGTATAGTAACC TTAATTGCCTTTAATATTGTTTTTCTTTTTATCCCAACCCATCTTTTATTTTATTAAAATAGTTAGTTTAGTGATTTAGC ATTGTGATGCAGAGCAGGACTCTCAAGTCAAATGTGATGATTTGCTTCCCACCATCTTTACCTAAATATGCATGAGCATG ACCATTGGTTTTGAGTTGTGATGCAGAGCATGACTTTTGGTTTTGAAGATTGAAGCCCAACATCTCCCTTTCTCTTTCAA TTTTCCCTATATTTTGTCTTTTTTCTCAAGCATGAAGACTGAAGCCCAACATCTCCCTCAAGATTTGATAACTGAAATTT TATTGAGGTTGCCAGTGAAGTCTCTTATACGCTTCAAGGCTGTGTGCAAGTTTTGGCGGTCTCTCATATCGGATCCCCTT TTTGCAAACTCACATTTTGAACTTGCTACTCCTAGACTCGTGTTCACTACTGATTCTGATTATGACATTCAAACCATCGA CTTAGATGGACGGCTTCACTCTAATCCTTTTTTTGAACCAATAAATCTTGACTTTTTGCACAGCTTTTTTACTTTTATTG AAGGTTCGTGTAGAGGCTTTCTTCTACTGCGCTATTATGAAAGCCTCCACTTGTGGAATCCAGCCACACGTGTCCACAGA CCGATACCTTCAATTTCTGCAATCGAAGACCCGGGTTGTCAATTTGGTTTTGGGTATGATTCATCCAAAGATGACTACTT GGTGGTTATAGTGTCTAATCATGTAACACCTGTGCAGTTTTTCTCATTAAGAGCTAATGTGTGGAAATATATTCAGAGTA CCGATTTACCTCCCTTGAACCTTTGTTATAATCATAGACCCGGGTTGCTCTTGAACGAGGCCATTCACTGGTTGGCTTGT GGCCATGATAAAACAAAGAATGTTATTGTTGCTTTTGATTTATTGGAAAGAAGACTTCTAGAGATACCCCTACCAGATGA TCTTGCCTGTAATCTTAAATCTTGTGCATTGTTGGCGCATGGAGGACTTTTGAGTGTTTATGTTAAGAGAAGTGACACAC TTGAAATATTTGTTATGGAAAAATACAAAATACAGTCTTCTTGGACCAAGACCATTGTTGTATCTTTGAGTGGTACTGAC ATTTTCTCAATATGCTCTACAAAAAGTGGTGATATTGTTATGCATAGTATGACAGGACTTGAGAAGTATACTGATAAAGG AGAACAACTACTGGAGCATTGCGTGGGTGGTGGTCTTCTAATTTCCCAAGTGTACATGTACACAGAGTCTATCCTTTCAC TCCCTGATGCCAAAGGGCAAAGCTGAAAAAATGCCTGACATTAACAAATGAGAATGAAATTTGTATTGTGAAATCTTGTG ACATTATGATGCATTGAACTAGGGGAAGTGATTTAGGTAGAATAATGAAACTACCTCGAATTTTTTTATTTTGTTACAAG AGGAAGACTTCTTGCATATTGCCTTGAAATTTGAGGACACTGGTTAGGAATTGCTTATGGGTACATGAATTTGGCTTCTT TGTTCTACGTCATTGTTATAAAAAAAATCCATTTTACGTACTTCATTTATTTTCTTGAGTTAATAATCATTTTGGTGCCT TTAAATGCAGTGAGGTTGGATTTGCATCCCTAGTCCGAATTTTTTTCCCACATTTTGCATATTGATTATCACACTCAACC CCAAACTGAAACAAACTAATCAATGCTCTCAAATCATTATTGATTTTTGAATATACCTTGCTGCTTGTTGTAACATGTAA GCTACCTGCCAATAAGCATGTTTGTATTCAACTTGGAAGTCTGGAACAGAGTGTTCATAAGCTTAATTGCCGTTACTATT GTTTCTTTAATAAAACAGTTAGTTTAGTAATTCAGGAAATGACTATTAGTTTTGAATTGTGATGCAGACCTTGACTCTCA AATGTAATGATTTGCTTCCCACCATCTTTACCTCAATATGCATGATTATTGATTTTGAATTGTTACAATTTCTGATTGCA TTCCTGGCAACACATCTAGATCATAATTTATCTTAAACATGACAAACATTCGGGTAATTACAACAAACCTTGGGTTAATT ATATCTTTAACTTGTGTTAATTATGTGATCACACTTCTAAGCCTATAAATTGCTACTTTGTCTATCTCACTTTGTGTTTC AATATTTCTCTATTTTCTCAAGCATGAAGATTGAAACCCAACCTTTGCCTCAAGATTTGATAACTGAATTTCTGTTGAAG TCTCTTGTTTGTTTAAAGATTGTGTGTAAGTTTTGGCGGTCTCTCATATCCGATATCCACTTTGCAAGATCACAGTTTGA ACTTGCTGCTCCTAAACTCGTGGTCAATACCTTTTTTCGCATTCTAACCATGGATTTTGATGATGGATCGCTTCACTTAA ATCCTCTTTTTGAACCAATAAGTGTTGACTTTTTGCCCACCGGCTCTCATATTTGAATTGTAGGTTCGTGTAGAGGCTTT CTCATATTGATGATATTGGACGGTAATGCAAGCCTCTACTTGTGGAATCCATCCACAAATGCCCACAAACCAATACCTTC ATCTTATTTTCACACCAACCTTCATGGTTATCTATATGGTTTTGGGTATGATTCATTAGAAGATGACCACTTGGTGGTTC AAGTACCCACTATACCAAGATCCTTCTCTTCTCACCTTGCTATTTAGCACGTGTGCAGTTTTTCTCAGTGAGAGCCAATA TGTCGAAATATATTGAGGATATTGATTGACCTCGCTTGAACCTCTCTACTAGGGATCGAAGTCTTGGGTTGGCATCTAGT ACACCGCGAGCATGATCTCCTCTATCTAGGATCCCAAGTGCCCATGTGTAGAGTCTATCTTATCACTCCATGGTGCCAGG GAGTGAAATTTTTATTGAATTGAATTTGCTCTAGGTCATCAACTTTTGATTCATTTGGCCAATATATTATCCCTTCATCC TAAAGTTTGTGGTTTAAATTTGCTTATATAAAATAAAATAAGAGCTGGAGCATTTATATTAGATGATAATTTACTATCTT GTTTATTATTATAAAAATATCAATTAGAGGATAATTTGTTTGAACTTATTATTTTGGTTACAAAACTTTGAAATTAAAAA TTTATCATCTCTTCGTTTTCCTTCGAAATTCATGCATCTTTTTATTTTTATTTTTATAGGATGCATCTTAATAATTTTAA AAATGATTTTTCATGTTGTACTTTTTTTTTACATCGGAAAGATAAATTGCACCCGCCAGAAATCGATCCTTGGACCTCCC TTAACCCATATGTCTCACAACTCCTACCGCATGAGCTATCCTGCAGGGACTCAGGTTGCGCTTTCATGCTTATATCGAAG AATTTCACCATGTGGTGGATTCTAAAACTAAAAAGCTAACCATTATCCAACCAATAAGTGACTAAATAAATAATCGTCAA TAATTAGTGTATGAGGAGTAATATAAAAATTAACAAATTTATAATTTGATTCTTCCTGTGATTGTATTTTTTAGAAAGTT CTAAGCAATTGATTTTATTAAGTGTATGAGTGAATTTGAGTAGAATCATCAACCTAGTATTTAATTTTTTTTATGCAATT GATATTTAAAAATATAAAATGTATTTAATATATTTATATTTCCCTCTTGTAACAAAAAAATATGTTATTAATATGTTTTT ATTTAATAAGAAGGCGAACTTGTTAACAATTTCTATAGTGCTCTGAACCTGAAGGAATTTTATACTTTTTGCCTTCATTC ATCGTGTTTTCTTTCATAATAAATTGTTATAATTTACAATCTAGTCCTTTTTATTCTAAAAAATAAACTGAAGGGTGTCA TACCGTCTCATACCTTCCCATTTTAAATGGATACCAGGGCAATGCCTGGACTTGTACAAGGACAAGAGTTATTCTTAATA TTAATATTATCCATTCTCCTCTTTTGGTTGTTTCTCCGCAAATCCACAGAAAGGCTTACCACATTAGTCCTAGGGCTTCC ACCTCCATGGGTTGTTGGCTTGTTGCCTCGACTACAACCTCCATCCGAAGAGCCTCTTTGGAATTGTCGTAGGCTAAGAG CTTCAAGTTTAGTGGTTACTAAACAAACATTGACACATCAAATGTCCATAACATTCAACAGATGAAGAAGAGAATGTGAT GCCTTCATACTCCATTTGCACCAATGGTGTCTCCACCAAACACAACCAACAATAGCACATGTCACAGTAAGGTTAATTTG AACGAAGACCCTAGCAAACCTACCCTGGTAATGTTCATAGTGTTTAAATTAATCCCCACAAGACGGCCAACGATTGAAGC CGTAGTCATAAGAATCTTTTTATTATAGAGCGCTAAACCTAGGGAAATGAATCCACACAAAATATTTGTTAACATTTTCT TCTTATGTAATGTACTTGAGAGTCCTAACCGATAGATAGTGATCGAAAATAAGTCAGTGTCCTCCCTCCATCTAACATGT ATTTGAAAGATTAATCAAATTATAAAATATTTGAATTAGGAAAAGAAGATATTTCCTGATATGCATTTAAAATAGTTTTT TGATAATAATTTTAATTTTGATAGATTATAATTTGAATAAAGGGAAGGAGAAAACTTACGTGTTATGTTATGACTCCCCC TGCAGTGGTTGCTGCGCTGTGTTTTAGAAAAAAGGAATAGGTTTCCACGGCGGGTTGTGACTCCCCTGCTGGTCGTGCTG CTTCCTCCGCCGTTTTCCTTTGCCCACCGCTCCTCCAGTTATCGCCGCCGGCAACCGTGCGCACGACTCTGTTCGACTGA CTCCCGTTGAGGTAAGGTGGTCTCACTCCATCGAATCTCCATTAATAGCCATATACACTTTTAATACAGAAATCACTGAA CACTGATTAATATACACTGCTTCAGAATTTGAAGCAAACTTATCATTCAATATTTTGACATTGATTTTTCAATATACTTG GCTACTTGTGCTCACCATGAATAACAATATGCATGTCTGTATTGAATTTGGAAGTTTGGAACAGAGTGTATAGTAACCTT GGCTGCCTTTAATATTGTTTTTCTTTTTACCCCACCCCATATGTTATTTAATTAAAATAGTGAGTTTAGTGATTTAGCAT TGTGATGCAGAGCATGACTCTCAAGTCAAATGTAATGATTTGCTCCCACCATCTTTTCCTCAATATGCATGAGCATGACC ATTGGTTTTGAGTTGTGATGCAGAGCATGACTTTTGGTTTTGAAGATTGAAGCCCAACATCTCCCTTTCTCTTTCAATTT TCCCTATATTTTGTCTTTTTTCTCAAGCATGAAGACTGAAGCCCAACATCTCCCTCAAGATTTGATAACTGAAATTTTAT TGAGGTTGCCAGTGAAGTCTCTTATACGCTTCAAGGCTGTGTGCAAGTTTTGGCGGTCTCTCATATCGGATCCCCTTTTT GCAAACTCACATTTTGAACTTGCTACTCCTAGACTTGTGTTCAGTACCAGGCTTGGTATTCAAACCATGGACTTAGATGG ATGTCTTCACTCTAATCCTATTTCTGAACCAATAAATGTTGACTGTTTGCCTACCAGCTCTCCTATTCGAATTCTAGATT CGTGTAGAGGCTTTCTGCTATTCGAGATTCTGCTATCGAAGTTTTTGGACCGCAATGCAAGCCTCTACTTGTGGAATCCA TCCACACATGTCCACAAACTAATACCTCCATCGCCTTCTCACATCGGCTATCATGATTTTCTAGATGGTTTTGGGTATGA TTCATCAAAGGATGACTACTTGGTGGTTCAAGTGTCTTGTCATCAAAGATGCCCACCTAGTTATTTAGCAATTGTGCAAA TTTTTTCATTGAGAGCTAATATGTGGAAAAATATTAAGTTTACGGATTTGCCTCACTTGAACCTCTCTTGTCAATCGGGA ATTGGGGTGCTCTTCAACGGGGCTTTTCACTGGATTGTTTATGATTCTGATAAATCCAGGTATGTTATTATTGCCTTTGA TTTAATGGAAGAGAGACTTTTTGAGATACCCGTCCCAAATGATCCTTCCCAATATCTCAAGTTTTGTGAATTGTGGGTGG ATGGAAGATTTTTGAGTCTATCAGCTTTGAGAAGTACTGATACACTTGAAATATGGGTTATGAAAAATTACAAAGTGCAG TCATCTTGGAGCAAGTCTCTTGTTCTATCTTTGAGTTGCTTTTCCTACGTTTACCCAATATGCTCTACAAAACGTGGTGA CGTTGTTATGGATTATCGAGGTGATGATAAAGCAAAACGGGTGAAGTATAGTGATAAAGGAGAACAGCTTGAACATCGTG AGTATGGTGGTTATCTTTTCTCCCAAGCGCACATGTATAAAGAGTCTATCCTTTCATTTCCTGGTGTAAGTGAGTGAAAT TAACAATTATGCTTAATGAAACTGCGGCAAATAGAATAAGACTCCGTATGAAATTATGCCTGAGGGCACTTGCTTATAGA AGTTACTACATGGGTTTAGTATCTTTTCCTTGCTTCATTATTTTCTTAACTTTTTATACACACCATCATTGATTTTCCCC CCTTTTTATGATGAGTAATTCCCCATAATTAATGTCAATACTGTGT
CDS sequence (LotjaGi5g1v0331000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGACTGAAGCCCAACATCTCCCTCAAGATTTGATAACTGAAATTTTATTGAGGTTGCCAGTGAAGTCTCTTATACG CTTCAAGGCTGTGTGCAAGTTTTGGCGGTCTCTCATATCGGATCCCCTTTTTGCAAACTCACATTTTGAACTTGCTACTC CTAGACTTGTGTTCAGTACCAGGCTTGGTATTCAAACCATGGACTTAGATGGATGTCTTCACTCTAATCCTATTTCTGAA CCAATAAATGTTGACTGTTTGCCTACCAGCTCTCCTATTCGAATTCTAGATTCGTGTAGAGGCTTTCTGCTATTCGAGAT TCTGCTATCGAAGTTTTTGGACCGCAATGCAAGCCTCTACTTGTGGAATCCATCCACACATGTCCACAAACTAATACCTC CATCGCCTTCTCACATCGGCTATCATGATTTTCTAGATGGTTTTGGGTATGATTCATCAAAGGATGACTACTTGGTGGTT CAAGTGTCTTGTCATCAAAGATGCCCACCTAGTTATTTAGCAATTGTGCAAATTTTTTCATTGAGAGCTAATATGTGGAA AAATATTAAGTTTACGGATTTGCCTCACTTGAACCTCTCTTGTCAATCGGGAATTGGGGTGCTCTTCAACGGGGCTTTTC ACTGGATTGTTTATGATTCTGATAAATCCAGGTATGTTATTATTGCCTTTGATTTAATGGAAGAGAGACTTTTTGAGATA CCCGTCCCAAATGATCCTTCCCAATATCTCAAGTTTTGTGAATTGTGGGTGGATGGAAGATTTTTGAGTCTATCAGCTTT GAGAAGTACTGATACACTTGAAATATGGGTTATGAAAAATTACAAAGTGCAGTCATCTTGGAGCAAGTCTCTTGTTCTAT CTTTGAGTTGCTTTTCCTACGTTTACCCAATATGCTCTACAAAACGTGGTGACGTTGTTATGGATTATCGAGGTGATGAT AAAGCAAAACGGGTGAAGTATAGTGATAAAGGAGAACAGCTTGAACATCGTGAGTATGGTGGTTATCTTTTCTCCCAAGC GCACATGTATAAAGAGTCTATCCTTTCATTTCCTGGTGTAAGTGAGTGA
Protein sequence (LotjaGi5g1v0331000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKTEAQHLPQDLITEILLRLPVKSLIRFKAVCKFWRSLISDPLFANSHFELATPRLVFSTRLGIQTMDLDGCLHSNPISE PINVDCLPTSSPIRILDSCRGFLLFEILLSKFLDRNASLYLWNPSTHVHKLIPPSPSHIGYHDFLDGFGYDSSKDDYLVV QVSCHQRCPPSYLAIVQIFSLRANMWKNIKFTDLPHLNLSCQSGIGVLFNGAFHWIVYDSDKSRYVIIAFDLMEERLFEI PVPNDPSQYLKFCELWVDGRFLSLSALRSTDTLEIWVMKNYKVQSSWSKSLVLSLSCFSYVYPICSTKRGDVVMDYRGDD KAKRVKYSDKGEQLEHREYGGYLFSQAHMYKESILSFPGVSE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| ProSiteProfiles | 2 | 52 | 51 | 11.432 | ||
| PANTHER | 3 | 354 | 352 | 1.2E-89 | – | |
| PANTHER | 3 | 354 | 352 | 1.2E-89 | – | |
| Gene3D | 6 | 44 | 39 | 4.3E-10 | – | |
| Pfam | 7 | 43 | 37 | 3.5E-8 | ||
| SUPERFAMILY | 7 | 61 | 55 | 4.97E-15 | ||
| SMART | 8 | 47 | 40 | 3.8E-8 | ||
| TIGRFAM | 99 | 316 | 218 | 6.3E-28 | ||
| SUPERFAMILY | 116 | 290 | 175 | 1.11E-5 | ||
| Pfam | 206 | 330 | 125 | 2.3E-10 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi5g1v0331000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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