Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0331100 |
| Transcript ID | LotjaGi5g1v0331100.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ribose-5-phosphate isomerase A; TAIR: AT2G01290.1 ribose-5-phosphate isomerase 2; Swiss-Prot: sp|Q9ZU38|RPI2_ARATH Probable ribose-5-phosphate isomerase 2; TrEMBL-Plants: tr|A0A1J7FSX7|A0A1J7FSX7_LUPAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0331100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:64816942..64821564) extracted from Lotus japonicus Gifu genome v1.2.
CCGCGCGAAAGGTACACAACACAACACAAACGCGTTAATGAATGTATCTGCTTCAAATCAAAAAATCAATTATAAAACGC AGTGTTTCAGAAACCTGGTTTCTCTATAAATTAATTCCCCAACCAAACATTCCTCATCTCCGCCTCCACCATTTTCCCTT CTTCTTCTTCTTCTTCTTCTCTTCTCTGATAACCCTATCTTCCTTCCTTCCATTCACCACCACCCATTCCTTATCTTCCT AGATTCTCTCTCTGCGATTTCATTATGGCTATTCCCTATCCCCATTTCATCTCCTCCGAGAAAGCAGCCATGGAAGCAGG TCTTCTCGCACCATCCTCCATCATTCTCACCCAAGACGATTTGAAGAAAATCGCCGCCTACAAAGCCGTCGAGTATGTCG AATCCGGCATGGTCCTCGGCCTCGGCACCGGCTCCACCGCCAAACACGCCGTCGCCCGAATCGGTGAGCTTCTCCGCCAG GGGAAGCTCACCGACATCGTCGGAATCCCCACCTCCACCATGACTCACGACCAGGCTCTCTCCGTCGGAATCCCCTTATC CGATCTCGACTCCCACCCCGTCGTTGATCTCGCCATTGACGGCGCCGACGAGGTTGATCCTTATCTCAACCTCGTCAAGG GGCGCGGTGGGTCGCTTCTCAGGGAGAAGATGGTGGAGGCTGCATGCAAGAAGTTTGTGGTCATTGTGGATGAGTCCAAG CTCGTGAACTATATAGGAGGAAGTGGGTTGGCTATGCCTGTTGAGGTTATTCAGTTTTGCTGGAAATTCACTGCTTCAAA GCTTCAATCCCTCTTTGAGGAATCTGGGTGTGTTGCCAAGCTCAGAACTGTTGGTGAGAAGGAGGAACCCTTTGTCACTG ACAATGGGAACTATATTGTGGATTTGTATTTCAAGGAGAGTATTGGTGATTTGAAGGCTGCCAGTGATTCAATTCTGCAG ATTGCTGGTGTTGTTGAGCATGGAATGTTTCTGGATATGGCTACCACTGTTATTATTGCAGGTGAACTTGGGCTAACGGT GAAAAACAAATAGCTGAATTTAGATGAATAACGTAGGTGAGATGAGATGAAACTAGTTTAATTTTGGTCAAGGTTCAATG CTTTGACTTGGGCTTCTAACACACCATGTGGTGTAATATTATAGATTTTTGTTCAACCAATCGATTGGAAGAGATGGTTT TTGTTATAATTCTTATTGGATAGGATTTGTTGGAGAAATTATCCCAATTCTCAGATATTGTATTCTTGTTTTTTTGACTT AGAAATTTGAGACTTGTTGGAAAGATGAATATTAAGCCCATATAAGAGCTCTTGTGTGGTACTGAATTAGTTATCCACAC AATTCCTTGCTGAATTGTTGCTTTTATCATATTGAACTTAATTCAAATTTTGCTTGTTTAACCCTTTGGTTTGCTACTAT TGAATTGTATAATTGGTACTTAGTCATTGTCTGGTTGCAAAACTGTTTTCTCTGTTGGCATCAGTATGCATCTGCAATCC AGAAATCATTTTTAGCCAGTTACATCTATGTGGTTAATAGTTAAAGTCTATATCTGCAACTTGACTTGAGGTATTCCTGT AAACACATTTGCAAGTGTTGGAAACTCTTTTGTTCATATATTATTTGTCGTTTTTGTAGTGTGTTACTTGTGTTGGTCAC CAATTGTAGCCTTACTTTATTTTAGAAGATGGTAGGTATCCAATTCATTGCTTTTTAAAAGGATTGGTGTTTGTGTCTTA TCTTATATTTCATCTTCTCCACTTAAATTTGTTTCAACCTCCATGAAAAAGAGACTCCAACTTATACATAACCTCCCCAG GTTTAATTGAGCCTAGTCCCAGATTGCTGCCAAAAAAGTGATTGTTTTCCAAAATAAGCTGAACCTCATACCCGTTTGTC ATAAGACCCCCTGCATTTTTTAACTAGCAGCACTTTTATTTACAGGACCAAATTCTCTGGTGGTTGATTTTGCTTTGTTA CTTCATCAGAAAAGAAAAAAATCAGAAATATAGTACCTAGTTGTTATTTACATACAGTTACATTTTCCTCACTAGAAACA ATGGGTGTTCTCTTGCATTTGTCATTAGGTAGCTGAAGTAAAACACTCCATTATGAATATTTTGAAGCTGAAATACTTAT TATTTGAAAACGCTATAGTGCCAACCATAAAGTAATGGAAGGCTGTCTCATGATTGATTGAATGTAGTCATAGATTTTTC TTTAGTATTGGTTTGCTCCCATAGTGACACAAATCAATCAAAGCATTCTGAGAGGCTTGAAAGGACCCAGGGCAAGCTGT AATTAGATTGAGAACTACTTGTTTTCATGGATTTCATTTTGAGCAAATGGTGCTATACAAGCTGTAGGGGCATATGTTAT TATTTACAGCTGCCAAACTTGCTCTTGTGAATTTATGACATATTTGGAGGTAATTGAAGATTGACATGTGAAATGGCTGT ATGTTTACTCTAGAGTTATTGGTTGTCATGCAACTAGTTCAAAGTTTTAGTTGAAGCTGAAAAGACAACATGTTATGTGT GATGTGCAAATACCTGTATGCTTAGAATTACATACAGACCATGTTCATTTATTTTATCTCTAGATTTTGGAAACTGATAG GGGTTAATTCTTGCTATTGTTTGTGTCATTTCATGGCAGTTGCGTTGCACCCTATATCTCAGGGCAGTCCCTTTTTGGCT GAAAACGATACAGCTTGACAATGATTAAGCCATATTAATGTTTTATTGGTGCAGTCTGGTAATATTTATGTTTACGCCTA ATACTTTATGGCTGCATCAAGCTTCCAATCCTCTTGTTGCTCGTACTTACATATTGTTCCTCTTTTGTCTGGATGCTCTG TAATGTTGTATCTATGGCAGTTCTTGACAGTTCTTACTTCTTCACCGTAACATCGGATGCTGGTGTTGTTTTTCATGGGG TCAGGTGGCAGGGATGCTGAGCTGTAATTCTTAGTCATGCTTAATTGAACATTAGAGGCAATTTAAATCTTTATTCCTGT TTCCTGTATACAGCTTCCATGCAATCTACTTACTTGGTGCATTGAAAAGGAAGCTGCAATACTAGCTTAACTGGGTAATG GGACTACTATGTTCTATATTTACCTATATCTATGCAGACTATGCTTCAGTTCTCTAAGAACTAGATATATTTTAAAATTA AGTTATCAAAGCTTGTATCTCTTCATATTGGAACCTTGTCAGCTAAGACTAAAAATCCATGATGGTGTTTAGTGTGACAT TATTTCATTGGAGTACAAGATTGTTCTTAATTCCTTTACAAGTTCCTCGCCTCTATGGAGCAATGCAAAGTGTTTTTATC TCAAAGATTATGCTAAATTGAACACAATGCATTGCTATTGCTCCTTAGAATTTGCTGTCCTTAATTGCAAGCTGAGGTTT CCAGGAAGTATAATTGATTATGTTATCAATGAGCTTGATCATAGGTAAACTGGTACAGTCATGCTAAAAACAAGTATCAG GAATTTTCCTGGCACGGGGCGTGATATAAAGGCTAAGGTATGAATCTTTCATTGATTTTTTTTGTTTGACTTGTTCTTTT GGCTGAATAAGCTAAGGGTGGCCATCAAGATTCGGTTGACCCATAAATCCCTTCAATCCTGGCGTTGTATAAGTAACTAT ACTTTGACTTCAAAGAGGTGTTTGGAATTGGATGTCTCATTCTCTCATTTTTTGTATTTTTTATTTCACTCAAGTATGCT TTAACGTGAAACTGATGTTTTGTGCTTCAAATTTGTGGGGTGGCTATTTTTGGATACCATTTAACACAAGTGCAAACGGG TAATAGCACATACTTTGAGGTAAAAAAGTTAACATAACTCTTCTTATATATTAAGATGAGTATATTTTAATTCAACTGGT ATCCAAATACATTATAGAGCTTAGTTATGAGATAGCTTAGTTATGAGAGGGGGGTCATACAATATGCTCTAGTATAAATA GTAATTATTTTCCTCTTGCACTTTCAATTCCACGAAACTATGGTGATGCTTCCACTTAAACGTTGTTTGCACTTTTCCTA ATAAAAAAAGGCTCAGAAATTGATTTTGACTTCAAAATCAATTATAGAATGATTTTTAAACATGCATGAAGTGTTCAAAG GGCAAACTTAAATGTTTTTTTTTGTAGTAATTCTAATAATGCGATAGCATTTGCTTTACCTTATGGCAGTTTTGGATACA AGAACTGTTTTCTTATCCGAATTCCGAAAGAAATCAGCACCACAACTACCAATCCACCAAGTGTCCATCACGAAACTCAT TTTCTATTTTGTTTGCCTTTTCTTTTTGTTTGCCTTCTTGGAAACCTCTAGCAGTGCCTGTACTGAGATTCCAAGCAAGC TTTTACTTTCACTTCTATTTTCTTTTTCATGACTTTTCATTTCCTGCCCGTTTGGGCCTTTTTCTTTTTGAAAAATCCTC CCGTTTTTTTGTCTTTTTTGCCAGTTCAGCCCATTAAACCGTTTTTCTGTCATTTTTCACTATAATTTTACACTAAATAC TTCAAACTTGATTAAGTTGAATTTTAATTATATCATTTATTTTTTAAATAATGATTAAGTTGT
CDS sequence (LotjaGi5g1v0331100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTATTCCCTATCCCCATTTCATCTCCTCCGAGAAAGCAGCCATGGAAGCAGGTCTTCTCGCACCATCCTCCATCAT TCTCACCCAAGACGATTTGAAGAAAATCGCCGCCTACAAAGCCGTCGAGTATGTCGAATCCGGCATGGTCCTCGGCCTCG GCACCGGCTCCACCGCCAAACACGCCGTCGCCCGAATCGGTGAGCTTCTCCGCCAGGGGAAGCTCACCGACATCGTCGGA ATCCCCACCTCCACCATGACTCACGACCAGGCTCTCTCCGTCGGAATCCCCTTATCCGATCTCGACTCCCACCCCGTCGT TGATCTCGCCATTGACGGCGCCGACGAGGTTGATCCTTATCTCAACCTCGTCAAGGGGCGCGGTGGGTCGCTTCTCAGGG AGAAGATGGTGGAGGCTGCATGCAAGAAGTTTGTGGTCATTGTGGATGAGTCCAAGCTCGTGAACTATATAGGAGGAAGT GGGTTGGCTATGCCTGTTGAGGTTATTCAGTTTTGCTGGAAATTCACTGCTTCAAAGCTTCAATCCCTCTTTGAGGAATC TGGGTGTGTTGCCAAGCTCAGAACTGTTGGTGAGAAGGAGGAACCCTTTGTCACTGACAATGGGAACTATATTGTGGATT TGTATTTCAAGGAGAGTATTGGTGATTTGAAGGCTGCCAGTGATTCAATTCTGCAGATTGCTGGTGTTGTTGAGCATGGA ATGTTTCTGGATATGGCTACCACTGTTATTATTGCAGGTGAACTTGGGCTAACGGTGAAAAACAAATAG
Protein sequence (LotjaGi5g1v0331100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAIPYPHFISSEKAAMEAGLLAPSSIILTQDDLKKIAAYKAVEYVESGMVLGLGTGSTAKHAVARIGELLRQGKLTDIVG IPTSTMTHDQALSVGIPLSDLDSHPVVDLAIDGADEVDPYLNLVKGRGGSLLREKMVEAACKKFVVIVDESKLVNYIGGS GLAMPVEVIQFCWKFTASKLQSLFEESGCVAKLRTVGEKEEPFVTDNGNYIVDLYFKESIGDLKAASDSILQIAGVVEHG MFLDMATTVIIAGELGLTVKNK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 262 | 262 | 1.0E-139 | – | |
| PANTHER | 1 | 262 | 262 | 1.0E-139 | – | |
| SUPERFAMILY | 29 | 213 | 185 | 2.62E-41 | ||
| Hamap | 30 | 260 | 231 | 30.1 | ||
| TIGRFAM | 33 | 256 | 224 | 1.4E-78 | ||
| CDD | 33 | 253 | 221 | 4.81049E-104 | ||
| Gene3D | 34 | 254 | 221 | 1.3E-80 | – | |
| Pfam | 79 | 254 | 176 | 3.3E-62 | ||
| Gene3D | 156 | 240 | 85 | 1.3E-80 | – | |
| SUPERFAMILY | 162 | 243 | 82 | 2.35E-19 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Ribose-5-phosphate isomerase activity | Catalysis of the reaction: D-ribose 5-phosphate = D-ribulose 5-phosphate. | ||
| Biological process | Pentose-phosphate shunt, non-oxidative branch | The branch of the pentose-phosphate shunt which does not involve oxidation reactions. It comprises a series of sugar phosphate interconversions, starting with ribulose 5-P and producing fructose 6-P and glyceraldehyde 3-P. |
Expression pattern of LotjaGi5g1v0331100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…