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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0331100 |
| Transcript ID | LotjaGi5g1v0331100.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ribose-5-phosphate isomerase A; TAIR: AT2G01290.1 ribose-5-phosphate isomerase 2; Swiss-Prot: sp|Q9ZU38|RPI2_ARATH Probable ribose-5-phosphate isomerase 2; TrEMBL-Plants: tr|A0A1J7FSX7|A0A1J7FSX7_LUPAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0331100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:64816945..64820291) extracted from Lotus japonicus Gifu genome v1.2.
CGCGAAAGGTACACAACACAACACAAACGCGTTAATGAATGTATCTGCTTCAAATCAAAAAATCAATTATAAAACGCAGT GTTTCAGAAACCTGGTTTCTCTATAAATTAATTCCCCAACCAAACATTCCTCATCTCCGCCTCCACCATTTTCCCTTCTT CTTCTTCTTCTTCTTCTCTTCTCTGATAACCCTATCTTCCTTCCTTCCATTCACCACCACCCATTCCTTATCTTCCTAGA TTCTCTCTCTGCGATTTCATTATGGCTATTCCCTATCCCCATTTCATCTCCTCCGAGAAAGCAGCCATGGAAGCAGGTCT TCTCGCACCATCCTCCATCATTCTCACCCAAGACGATTTGAAGAAAATCGCCGCCTACAAAGCCGTCGAGTATGTCGAAT CCGGCATGGTCCTCGGCCTCGGCACCGGCTCCACCGCCAAACACGCCGTCGCCCGAATCGGTGAGCTTCTCCGCCAGGGG AAGCTCACCGACATCGTCGGAATCCCCACCTCCACCATGACTCACGACCAGGCTCTCTCCGTCGGAATCCCCTTATCCGA TCTCGACTCCCACCCCGTCGTTGATCTCGCCATTGACGGCGCCGACGAGGTTGATCCTTATCTCAACCTCGTCAAGGGGC GCGGTGGGTCGCTTCTCAGGGAGAAGATGGTGGAGGCTGCATGCAAGAAGTTTGTGGTCATTGTGGATGAGTCCAAGCTC GTGAACTATATAGGAGGAAGTGGGTTGGCTATGCCTGTTGAGGTTATTCAGTTTTGCTGGAAATTCACTGCTTCAAAGCT TCAATCCCTCTTTGAGGAATCTGGGTGTGTTGCCAAGCTCAGAACTGTTGGTGAGAAGGAGGAACCCTTTGTCACTGACA ATGGGAACTATATTGTGGATTTGTATTTCAAGGAGAGTATTGGTGATTTGAAGGCTGCCAGTGATTCAATTCTGCAGATT GCTGGTGTTGTTGAGCATGGAATGTTTCTGGATATGGCTACCACTGTTATTATTGCAGGTGAACTTGGGCTAACGGTGAA AAACAAATAGCTGAATTTAGATGAATAACGTAGGTGAGATGAGATGAAACTAGTTTAATTTTGGTCAAGGTTCAATGCTT TGACTTGGGCTTCTAACACACCATGTGGTGTAATATTATAGATTTTTGTTCAACCAATCGATTGGAAGAGATGGTTTTTG TTATAATTCTTATTGGATAGGATTTGTTGGAGAAATTATCCCAATTCTCAGATATTGTATTCTTGTTTTTTTGACTTAGA AATTTGAGACTTGTTGGAAAGATGAATATTAAGCCCATATAAGAGCTCTTGTGTGGTACTGAATTAGTTATCCACACAAT TCCTTGCTGAATTGTTGCTTTTATCATATTGAACTTAATTCAAATTTTGCTTGTTTAACCCTTTGGTTTGCTACTATTGA ATTGTATAATTGGTACTTAGTCATTGTCTGGTTGCAAAACTGTTTTCTCTGTTGGCATCAGTATGCATCTGCAATCCAGA AATCATTTTTAGCCAGTTACATCTATGTGGTTAATAGTTAAAGTCTATATCTGCAACTTGACTTGAGGTATTCCTGTAAA CACATTTGCAAGTGTTGGAAACTCTTTTGTTCATATATTATTTGTCGTTTTTGTAGTGTGTTACTTGTGTTGGTCACCAA TTGTAGCCTTACTTTATTTTAGAAGATGGTAGGTATCCAATTCATTGCTTTTTAAAAGGATTGGTGTTTGTGTCTTATCT TATATTTCATCTTCTCCACTTAAATTTGTTTCAACCTCCATGAAAAAGAGACTCCAACTTATACATAACCTCCCCAGGTT TAATTGAGCCTAGTCCCAGATTGCTGCCAAAAAAGTGATTGTTTTCCAAAATAAGCTGAACCTCATACCCGTTTGTCATA AGACCCCCTGCATTTTTTAACTAGCAGCACTTTTATTTACAGGACCAAATTCTCTGGTGGTTGATTTTGCTTTGTTACTT CATCAGAAAAGAAAAAAATCAGAAATATAGTACCTAGTTGTTATTTACATACAGTTACATTTTCCTCACTAGAAACAATG GGTGTTCTCTTGCATTTGTCATTAGGTAGCTGAAGTAAAACACTCCATTATGAATATTTTGAAGCTGAAATACTTATTAT TTGAAAACGCTATAGTGCCAACCATAAAGTAATGGAAGGCTGTCTCATGATTGATTGAATGTAGTCATAGATTTTTCTTT AGTATTGGTTTGCTCCCATAGTGACACAAATCAATCAAAGCATTCTGAGAGGCTTGAAAGGACCCAGGGCAAGCTGTAAT TAGATTGAGAACTACTTGTTTTCATGGATTTCATTTTGAGCAAATGGTGCTATACAAGCTGTAGGGGCATATGTTATTAT TTACAGCTGCCAAACTTGCTCTTGTGAATTTATGACATATTTGGAGGTAATTGAAGATTGACATGTGAAATGGCTGTATG TTTACTCTAGAGTTATTGGTTGTCATGCAACTAGTTCAAAGTTTTAGTTGAAGCTGAAAAGACAACATGTTATGTGTGAT GTGCAAATACCTGTATGCTTAGAATTACATACAGACCATGTTCATTTATTTTATCTCTAGATTTTGGAAACTGATAGGGG TTAATTCTTGCTATTGTTTGTGTCATTTCATGGCAGTTGCGTTGCACCCTATATCTCAGGGCAGTCCCTTTTTGGCTGAA AACGATACAGCTTGACAATGATTAAGCCATATTAATGTTTTATTGGTGCAGTCTGGTAATATTTATGTTTACGCCTAATA CTTTATGGCTGCATCAAGCTTCCAATCCTCTTGTTGCTCGTACTTACATATTGTTCCTCTTTTGTCTGGATGCTCTGTAA TGTTGTATCTATGGCAGTTCTTGACAGTTCTTACTTCTTCACCGTAACATCGGATGCTGGTGTTGTTTTTCATGGGGTCA GGTGGCAGGGATGCTGAGCTGTAATTCTTAGTCATGCTTAATTGAACATTAGAGGCAATTTAAATCTTTATTCCTGTTTC CTGTATACAGCTTCCATGCAATCTACTTACTTGGTGCATTGAAAAGGAAGCTGCAATACTAGCTTAACTGGGTAATGGGA CTACTATGTTCTATATTTACCTATATCTATGCAGACTATGCTTCAGTTCTCTAAGAACTAGATATATTTTAAAATTAAGT TATCAAAGCTTGTATCTCTTCATATTGGAACCTTGTCAGCTAAGACTAAAAATCCATGATGGTGTTTAGTGTGACATTAT TTCATTGGAGTACAAGATTGTTCTTAATTCCTTTACAAGTTCCTCGCCTCTATGGAGCAATGCAAAG
CDS sequence (LotjaGi5g1v0331100.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTATTCCCTATCCCCATTTCATCTCCTCCGAGAAAGCAGCCATGGAAGCAGGTCTTCTCGCACCATCCTCCATCAT TCTCACCCAAGACGATTTGAAGAAAATCGCCGCCTACAAAGCCGTCGAGTATGTCGAATCCGGCATGGTCCTCGGCCTCG GCACCGGCTCCACCGCCAAACACGCCGTCGCCCGAATCGGTGAGCTTCTCCGCCAGGGGAAGCTCACCGACATCGTCGGA ATCCCCACCTCCACCATGACTCACGACCAGGCTCTCTCCGTCGGAATCCCCTTATCCGATCTCGACTCCCACCCCGTCGT TGATCTCGCCATTGACGGCGCCGACGAGGTTGATCCTTATCTCAACCTCGTCAAGGGGCGCGGTGGGTCGCTTCTCAGGG AGAAGATGGTGGAGGCTGCATGCAAGAAGTTTGTGGTCATTGTGGATGAGTCCAAGCTCGTGAACTATATAGGAGGAAGT GGGTTGGCTATGCCTGTTGAGGTTATTCAGTTTTGCTGGAAATTCACTGCTTCAAAGCTTCAATCCCTCTTTGAGGAATC TGGGTGTGTTGCCAAGCTCAGAACTGTTGGTGAGAAGGAGGAACCCTTTGTCACTGACAATGGGAACTATATTGTGGATT TGTATTTCAAGGAGAGTATTGGTGATTTGAAGGCTGCCAGTGATTCAATTCTGCAGATTGCTGGTGTTGTTGAGCATGGA ATGTTTCTGGATATGGCTACCACTGTTATTATTGCAGTTGCGTTGCACCCTATATCTCAGGGCAGTCCCTTTTTGGCTGA AAACGATACAGCTTGA
Protein sequence (LotjaGi5g1v0331100.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAIPYPHFISSEKAAMEAGLLAPSSIILTQDDLKKIAAYKAVEYVESGMVLGLGTGSTAKHAVARIGELLRQGKLTDIVG IPTSTMTHDQALSVGIPLSDLDSHPVVDLAIDGADEVDPYLNLVKGRGGSLLREKMVEAACKKFVVIVDESKLVNYIGGS GLAMPVEVIQFCWKFTASKLQSLFEESGCVAKLRTVGEKEEPFVTDNGNYIVDLYFKESIGDLKAASDSILQIAGVVEHG MFLDMATTVIIAVALHPISQGSPFLAENDTA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 255 | 255 | 3.6E-134 | – | |
| PANTHER | 1 | 255 | 255 | 3.6E-134 | – | |
| SUPERFAMILY | 29 | 213 | 185 | 2.93E-41 | ||
| Hamap | 30 | 265 | 236 | 29.461 | ||
| CDD | 33 | 252 | 220 | 1.68055E-104 | ||
| TIGRFAM | 33 | 252 | 220 | 4.7E-78 | ||
| Gene3D | 34 | 252 | 219 | 4.5E-80 | – | |
| Pfam | 79 | 252 | 174 | 1.3E-61 | ||
| Gene3D | 156 | 240 | 85 | 4.5E-80 | – | |
| SUPERFAMILY | 162 | 243 | 82 | 2.49E-19 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Ribose-5-phosphate isomerase activity | Catalysis of the reaction: D-ribose 5-phosphate = D-ribulose 5-phosphate. | ||
| Biological process | Pentose-phosphate shunt, non-oxidative branch | The branch of the pentose-phosphate shunt which does not involve oxidation reactions. It comprises a series of sugar phosphate interconversions, starting with ribulose 5-P and producing fructose 6-P and glyceraldehyde 3-P. |
Expression pattern of LotjaGi5g1v0331100.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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