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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0331400 |
| Transcript ID | LotjaGi5g1v0331400.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RING/FYVE/PHD zinc finger superfamily protein; TAIR: AT2G01275.3 RING/FYVE/PHD zinc finger superfamily protein; Swiss-Prot: sp|F4JKK0|SUD1_ARATH Probable E3 ubiquitin ligase SUD1; TrEMBL-Plants: tr|G7IAT6|G7IAT6_MEDTR RING/FYVE/PHD zinc finger protein; Found in the gene: LotjaGi5g1v0331400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:64834606..64840048) extracted from Lotus japonicus Gifu genome v1.2.
GTAGAATTTAATGTGTGATTTAAAAAAAAAATGACCCTCTTAATTATTTTTTCACGCCTTAAATTGCTGCTAGTTGTTTT GTTTCTGTTTTACATTTCTGTGTTCAAAAAAATAAGATAAAAAATTCACCATCACCATTCTCATTGGTAGTTACTGTATT AGAAAACAAAGAAATGATGAAATAAGAGAGTGAGTGGTGGTGAATATGGTGAATACAAGTTAACGGTGAAATAGGGAGCG TTTAATCGTGGCGGTCCCATTCTCCCACAACAGGTGCATCGTGCATTCAGGTTCATTCTCTTCTCTTTCAATCATCATCA TCTATAAAAGCAAACCAGAAACACTCCAATGAATGAATCAATGTCTGTCGCATCTCTCATTGTATGTATGTGTGTATGTA TCTCCATGAACCAACGACACTCAATCTCTTGCTTCATTCCCATCAATCAATTCTCAGGAGGAATCAAAAAGGTGAATCAA TCAAACCTTTCTTCGACGCTTCAACAATATGCTATACCCTTCTTCTAAGATTCCTCCTTCCTTTCTACCCTTCTTTTTTC TCATGCTTCCTTTCGCTTTTCATCTCATTCATTCTTATTCTATCTCCAAGTACTAAAGCTTTTCGCTTTTTGTTCTCTTG TTCCCTTTTTCTCATCTGGGTCGGTTTCATCTTCCCCCTTTTCCCCTTAACCTTTTCTGGGTACTTTTTTCAACTTACCC TTTTTTCAACTTTCTCTTTTTCTCACTCTAAATTCATATTCAGATTAATTGCTGTCGTTCATTCAGTTCAATTTGTCAGT TTCTGAGGTTTCATCAACTTTTTTTTTCATTTTTTGTGGTTTCTGTTTATGAAATTGACAACCCCCCATCATGGTTTCTG TACAAGCATTATGTGCGGTCCAGCTTTTGTGATGGGAACTAGGAATTTCTGCATGAAGATAAAATTCGCCAATTTTATGG GCATTCAAAGAAAATTGATACTTTCTAAATATGCTTTTTTCATGATGTTTGCTGACATGTTCTTTTTGTTTCTTTCCTTG CATGTGGCTTTCATTTCCAGGAATTCTGATTCATCAAGGAGTTTTACTTTACCTAGAGGTTTACACACACACGGAATATA GAAGGAATCCTCTTTGGTAGTACAGTGAGTTTTGGTATAAATATTAAAGGCGCGCGGCGAAGATGGGGGATCACTTTGAT TTGCTCGTTGATCGATTGCTTACTGAATCCACATTAGAAGCTGCACTCGAAAGCCGAAAGCGATCAATGCAGGCCGCTTG CTCGGTGGTGAATGACACGAAAGTTGATATCTCTTTGATAAAGATGGGTCCAGGTGATATCAAATATCCAGGGAAAATGG TGGAGTGCAGGATATGTCATGACGATGACGAGGATTCCAATATGGAGGCACCCTGCTCTTGTTGTGGTAGTTTGAAGGTT AGTTCTTTACTAGCATATTCATAATTATATGTATTGATGATAGGTGAAAGTGTTTAAGCTTTTTGTTGTGTATTGTTGAA TTTGTAAGTTGTAACAGAAATTCATGAAATCTGTGTTTTAAAATATGAAGGAAAACAAAATTTGTTGATGGAAATAAACT TTCTTGAAGAATTTCAAATCTCCACTGACATATTTTCTGTCAGATGGTTGATTAGTTTTAATCATAAGAAGCACTTAGTC TGTTTCTTATCCATCTATATGGTTGCACTTAGAGAGATGATGATAATTATTATTTTAACACCTCCGTTACCAAGTTACAT TTAAAAAGAAAAATTCCCTTCCACCTAAGACAACCAAGGAATCTGGTGAAATACTAGGAAACATAGATCTTTGATAAGAG TATACCTTGCAAGGTGTGCCACAAGACCTTTTCTTTGATCTTTGACAGCATAGGGGTTAGGAACTTCCAAGGTGCGATGC ACTGGATGCATTCTCATTTCGCAGTGTGTTGAGGATATGTGTGATTTAGCATTGTAGAAGCTTGTGTTGCTATTAATCTG ACATGACGTCGTTAGGTAGAGTGTAGAGACCTTATTCAGCAAGGTAGGAATTTGGGAAATATCAGCTTAGATTTGTTTCC AGCATGCATTGCATCAGGGAAGGTCTGTGCAGTTGCAATGTATCATGTGGTGGTCTCATATAAGATGGATTGTGAAACAT GGAGCCCTTGTCTGCATGCTTTTGATGGTGCGCCCTGCTTAATCATCATAAATAATGCAAGAAGTTGTAAATGATCCCCC TGCTTTCCTTGTATTTGGCAGGGTTCTCAGTAGCGCTAGCCGCTCCTAGTTACTTTCTAGCGTCCCAGTTTAGTGTAGTA GCCGTCGAAGCTGCTAAAGCGGTGGAAATAGGGGATGTCGAAACGCTATCTTGCTGCTCTTTGGTGGGACTAAGAAAAGC CAAAAATCCCTTTGGAAAGTTAATGTTAGGGAGTTTTGGGGGTATTGTAGGCTTTTGACTTGGGAAACATACTGAAGTGA AAAGGGACTGGTTTTGAGAAAACTCACTCATCACGGCTTTCTTCCTTTCTTTGTCTGAGCCAACTCTTAGATGGTCTTGG TCTGATTTTAGACAGTTTAGTTTAAGCCTTTGAGGCTTGGTATTCTGGGTTATCTTGACTTTCTTCGGTATTTGGTTGTA TGATTTGTTTAAGGTACCTAAGAATTTCAATTGTTAATAATGACCATCATGAATTTTGAGTATTCTTTAGTATTTATATA TGTATATGGTGTAAATTATATGAACTGTGAAAAAATCAGTATAGCTCCTGCTATATGTTATACTGCTATGCCATTTCTGG GGTCGGCCATTATGCTCTGCTATCCGAGATTGGCAACCTATGTTGCATGGATACGGGTACGGTACCGGGTACGGGTATGG GTACGGGGTACGGCATTTTTTGAAAAACCAGGGTACGGGTACGCCAGTTATATATATATATATATTTATTTATTTAATAA ATATATATATATATAGAAATAAAATATTTTCTACCACAATATTATTAATTAAAAATATTAAATCTCCTAATGGTCAATAC TTATATGAAAGACCAACATAAAAACCATCACAACCTAATGAAAATCATCAAAATAATATGTAATACCTTAACATATATCT TCAAACACATACCGTCATAGATAATCTTAAGATTGAAGAAACATAACATAAGATTGAGTAACATTGAAGAGACATAACAT AAGATTGTTCAACATAGACAGTAACACAAATTAAAATAGTGCAAAAGAGACAATACGATTGTTCAACACAACAAAACAAT TAAATGATAGATTGTTCAACAACCAACAGTACAAAATCAAAAAGTAATGATGTCATCATTCCCTTTTCCATCATCAGTGA CAAAAAACGAAGTAGTTTTGAAAAAAAAAAAAAATTTTTAAAAAAGTATCCTGAGTACCCACGGGCGTACCCAAACGTAC CCGTGGCGTACCCAAAAACGTACCCCAGTTTTTTTTTTTGGGTGGACTTGGGTACGTACCAGGTACGTACCCACGGCGTA CCCATGGCGTACCCGTACCGGGTACGTACCCGGTACGGGTACAATGCGATTTTTGGAGTACCCGTGCATCATAGTTGGCA ACACTGTATTTGGTTAGTATTGTACTTTTGTTGCTGAATAAAATTGTGTTTTAGCCTCTTGATAGTTGTTCTCTGGTAGC AAAAATAAAAGAGTTTTAGGTTGTATTTGTCTCTTCATTTTTTAGAAGTTGCACATAGATTAGCTGCCAAATTTTCCCAA GTCAATTGATGTTTGGTCCAATATTAGAAGTATTTGCAGGATATCTTGCGCAAATTTTCATTTTATTTGCTGAAAGTTGA TAGCTTAAACTCTGTTCACTTTAATTGACTTTTGCAGTACGCCCACCGTAGATGTATACAGCGATGGTGTAATGAGAAGG GTGACACCACCTGTGAGATATGCCACCAGGTAACTTAAAAATTGTTCCTCTTCCTGATTTGCACTTCCTTTCTACATACT TGTCCCATGGATAATTGATTTGAGGAAATGATGTTATCTGGTTTTTTTGGTTTGTGGAGTCATTATATTTGTCATATCCT TTTGCACCTGATTATTATAATTGGTGATTTTTCCTTATATTGTAAATTTCAGCCATTCAAGCCTGGTTATACAGCTCCTC CTCCACTTTTTCAGTTTGGACGTATTCCAATGAGTTTCAGGTAACTTCCATGCAATTTTCTTATCCCCCCCCCCCAAAGT TAATCTGCGTACCATGCTTTTTCTTTTCCATTTTCTAATATGCTTCCATGCTGTTCATGTCAGGGGAAATTGGGAGATTT CAAGAAGAGACTTAAATAGTGCTCATTTGGTTAGCATGGTGCCAACCGACCCGAACCTTCTCAATTCTAACTATGATCAG GATTCACCTTCTACTTCAGGAAGTTTGCTATGCTGCCGTTCAGTTGCTGTCATCGTAAGCTCTCTCATTCTCTTATGCAT ATACTATGCGTTTACCCCTTCTGGCTATGAATTTTCTCAACCTTCATTGCTCTCATGTGCAGTTTATGGTTCTACTGATT TTACGACATGCACTTCCCCTTGTAATTACTGGAAACAAGGAGTATTCTTTCCCACTTTTTATGGTATGTTTTGCACAACA TAATTTTAGTAAGAACACTTTGATCATACTCCTTACTTACCAAGATTTATTCAATGTAATGGAGTTTTATAGCTGGTATT TTTTCGGACTGCTGGAGTTGTTCTTCCTATATACTTCATGGTCAGAGCAGTGACTCTAATTCAGCGACACCGGAGACAAC ATCGAGTAAGTTTCGCTACCATAGGTTAACCTTTTTCACTTTCTCATTGTTCACTGTATCACATGAATCACAGTACTTAT GTTGAAGTCTTACGTGTTTTTCGCTTGGCCATTTGTAACCATTAGGAGCTTCCTAATGCCCTGGTCAGTTTATCTGACAA TGAAATTGAGCAAGGCGCTTTGCAGCATCAGCCTCATGTCATACATCTACTTTAAAGATACTGTAGCCACTTGAAGTAAA TGAAGTGGGAAAAAGCTCTTGGTTTGGGATGCTGCAATTTGTCTTCTAATGTATGATTAGATGGAGAAAACTTCCTTGAG ATACTTGATTTTTCTGAGGAATGAGGATAAAATTGGTCAGAAGACACTGAAATTCAATGTGCAACAAGTGTCATGCCTCA TGAGAGCAATTGCATGCCAACTCCTCAGCAAGTCTTGGCTGCAGCAAGTTATGCATTTACTGTTTCTGCTTACTGGTTGG AATTTCTCAGATTCAGTACAAATTCTCCAGTGTAGATAGAAATTTATAATTATGTAGAGAAAATTACATGGGTAGATATC AAAGATGGATGACTTATTTGTATATATTGCAATGAAAAATATGTATGTATGTATGTTGTTTTTTTCAAGGAAATGATGCC AGC
CDS sequence (LotjaGi5g1v0331400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGGGATCACTTTGATTTGCTCGTTGATCGATTGCTTACTGAATCCACATTAGAAGCTGCACTCGAAAGCCGAAAGCG ATCAATGCAGGCCGCTTGCTCGGTGGTGAATGACACGAAAGTTGATATCTCTTTGATAAAGATGGGTCCAGGTGATATCA AATATCCAGGGAAAATGGTGGAGTGCAGGATATGTCATGACGATGACGAGGATTCCAATATGGAGGCACCCTGCTCTTGT TGTGGTAGTTTGAAGTACGCCCACCGTAGATGTATACAGCGATGGTGTAATGAGAAGGGTGACACCACCTGTGAGATATG CCACCAGCCATTCAAGCCTGGTTATACAGCTCCTCCTCCACTTTTTCAGTTTGGACGTATTCCAATGAGTTTCAGGGGAA ATTGGGAGATTTCAAGAAGAGACTTAAATAGTGCTCATTTGGTTAGCATGGTGCCAACCGACCCGAACCTTCTCAATTCT AACTATGATCAGGATTCACCTTCTACTTCAGGAAGTTTGCTATGCTGCCGTTCAGTTGCTGTCATCTTTATGGTTCTACT GATTTTACGACATGCACTTCCCCTTGTAATTACTGGAAACAAGGAGTATTCTTTCCCACTTTTTATGCTGGTATTTTTTC GGACTGCTGGAGTTGTTCTTCCTATATACTTCATGGTCAGAGCAGTGACTCTAATTCAGCGACACCGGAGACAACATCGA GAGCTTCCTAATGCCCTGGTCAGTTTATCTGACAATGAAATTGAGCAAGGCGCTTTGCAGCATCAGCCTCATGTCATACA TCTACTTTAA
Protein sequence (LotjaGi5g1v0331400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGDHFDLLVDRLLTESTLEAALESRKRSMQAACSVVNDTKVDISLIKMGPGDIKYPGKMVECRICHDDDEDSNMEAPCSC CGSLKYAHRRCIQRWCNEKGDTTCEICHQPFKPGYTAPPPLFQFGRIPMSFRGNWEISRRDLNSAHLVSMVPTDPNLLNS NYDQDSPSTSGSLLCCRSVAVIFMVLLILRHALPLVITGNKEYSFPLFMLVFFRTAGVVLPIYFMVRAVTLIQRHRRQHR ELPNALVSLSDNEIEQGALQHQPHVIHLL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 266 | 266 | 5.1E-112 | – | |
| PANTHER | 1 | 266 | 266 | 5.1E-112 | ||
| Phobius | 1 | 173 | 173 | - | – | |
| Gene3D | 52 | 117 | 66 | 9.3E-19 | ||
| ProSiteProfiles | 54 | 114 | 61 | 22.018 | ||
| SUPERFAMILY | 60 | 112 | 53 | 1.94E-14 | – | |
| SMART | 61 | 108 | 48 | 1.8E-19 | ||
| CDD | 62 | 108 | 47 | 1.28829E-18 | – | |
| Pfam | 62 | 107 | 46 | 2.5E-12 | ||
| Pfam | 113 | 229 | 117 | 2.5E-41 | ||
| TMHMM | 171 | 193 | 23 | - | – | |
| Phobius | 174 | 193 | 20 | - | – | |
| Phobius | 194 | 204 | 11 | - | – | |
| Phobius | 205 | 226 | 22 | - | – | |
| TMHMM | 208 | 230 | 23 | - | – | |
| Phobius | 227 | 269 | 43 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of LotjaGi5g1v0331400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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